Literature DB >> 22415104

Adaptive microclimatic evolution of the dehydrin 6 gene in wild barley at "Evolution Canyon", Israel.

Zujun Yang1, Tao Zhang, Guangrong Li, Eviatar Nevo.   

Abstract

Dehydrins are one of the major stress-induced gene families, and the expression of dehydrin 6 (Dhn6) is strictly related to drought in barley. In order to investigate how the evolution of the Dhn6 gene is associated with adaptation to environmental changes, we examined 48 genotypes of wild barley, Hordeum spontaneum, from "Evolution Canyon" at Mount Carmel, Israel. The Dhn6 sequences of the 48 genotypes were identified, and a recent insertion of 342 bp at 5'UTR was found in the sequences of 11 genotypes. Both nucleotide and haplotype diversity of single nucleotide polymorphism in Dhn6 coding regions were higher on the AS ("African" slope or dry slope) than on the ES ("European" slope or humid slope), and the applied Tajima D and Fu-Li test rejected neutrality of SNP diversity. Expression analysis indicated that the 342 bp insertion at 5'UTR was associated with the earlier up-regulation of Dhn6 after dehydration. The genetic divergence of amino acids sequences indicated significant positive selection of Dhn6 among the wild barley populations. The diversity of Dhn6 in microclimatic divergence slopes suggested that Dhn6 has been subjected to natural selection and adaptively associated with drought resistance of wild barley at "Evolution Canyon".

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Year:  2012        PMID: 22415104     DOI: 10.1007/s10709-012-9641-1

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  33 in total

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Authors:  E Nevo
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-22       Impact factor: 11.205

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Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Authors:  F Tajima
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

4.  Statistical tests of neutrality of mutations.

Authors:  Y X Fu; W H Li
Journal:  Genetics       Date:  1993-03       Impact factor: 4.562

5.  Chloroplast small heat-shock proteins protect photosynthesis during heavy metal stress.

Authors:  Scott A Heckathorn; J Kathleen Mueller; Stephanie Laguidice; Bin Zhu; Tara Barrett; Brian Blair; Yan Dong
Journal:  Am J Bot       Date:  2004-09       Impact factor: 3.844

6.  Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization.

Authors:  Peter L Morrell; Donna M Toleno; Karen E Lundy; Michael T Clegg
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-07       Impact factor: 11.205

Review 7.  DNA sequence insertion and evolutionary variation in gene regulation.

Authors:  R J Britten
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-03       Impact factor: 11.205

8.  Expression of dehydrin 5 during the development of frost tolerance in barley (Hordeum vulgare).

Authors:  Klára Kosová; Ludmila Holková; Ilja Tom Prásil; Pavla Prásilová; Marta Bradácová; Pavel Vítámvás; Vera Capková
Journal:  J Plant Physiol       Date:  2008-02-19       Impact factor: 3.549

9.  Cold stress decreases the capacity for respiratory NADH oxidation in potato leaves.

Authors:  A Staffan Svensson; Fredrik I Johansson; Ian M Møller; Allan G Rasmusson
Journal:  FEBS Lett       Date:  2002-04-24       Impact factor: 4.124

10.  Evolution of stress-regulated gene expression in duplicate genes of Arabidopsis thaliana.

Authors:  Cheng Zou; Melissa D Lehti-Shiu; Michael Thomashow; Shin-Han Shiu
Journal:  PLoS Genet       Date:  2009-07-31       Impact factor: 5.917

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  1 in total

1.  SNP-revealed genetic diversity in wild emmer wheat correlates with ecological factors.

Authors:  Jing Ren; Liang Chen; Daokun Sun; Frank M You; Jirui Wang; Yunliang Peng; Eviatar Nevo; Avigdor Beiles; Dongfa Sun; Ming-Cheng Luo; Junhua Peng
Journal:  BMC Evol Biol       Date:  2013-08-13       Impact factor: 3.260

  1 in total

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