Literature DB >> 22414991

Visual analytics of brain networks.

Kaiming Li1, Lei Guo, Carlos Faraco, Dajiang Zhu, Hanbo Chen, Yixuan Yuan, Jinglei Lv, Fan Deng, Xi Jiang, Tuo Zhang, Xintao Hu, Degang Zhang, L Stephen Miller, Tianming Liu.   

Abstract

Identification of regions of interest (ROIs) is a fundamental issue in brain network construction and analysis. Recent studies demonstrate that multimodal neuroimaging approaches and joint analysis strategies are crucial for accurate, reliable and individualized identification of brain ROIs. In this paper, we present a novel approach of visual analytics and its open-source software for ROI definition and brain network construction. By combining neuroscience knowledge and computational intelligence capabilities, visual analytics can generate accurate, reliable and individualized ROIs for brain networks via joint modeling of multimodal neuroimaging data and an intuitive and real-time visual analytics interface. Furthermore, it can be used as a functional ROI optimization and prediction solution when fMRI data is unavailable or inadequate. We have applied this approach to an operation span working memory fMRI/DTI dataset, a schizophrenia DTI/resting state fMRI (R-fMRI) dataset, and a mild cognitive impairment DTI/R-fMRI dataset, in order to demonstrate the effectiveness of visual analytics. Our experimental results are encouraging.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22414991      PMCID: PMC3956683          DOI: 10.1016/j.neuroimage.2012.02.075

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  62 in total

Review 1.  Update on the magnetic resonance imaging core of the Alzheimer's disease neuroimaging initiative.

Authors:  Clifford R Jack; Matt A Bernstein; Bret J Borowski; Jeffrey L Gunter; Nick C Fox; Paul M Thompson; Norbert Schuff; Gunnar Krueger; Ronald J Killiany; Charles S Decarli; Anders M Dale; Owen W Carmichael; Duygu Tosun; Michael W Weiner
Journal:  Alzheimers Dement       Date:  2010-05       Impact factor: 21.566

2.  Regional homogeneity approach to fMRI data analysis.

Authors:  Yufeng Zang; Tianzi Jiang; Yingli Lu; Yong He; Lixia Tian
Journal:  Neuroimage       Date:  2004-05       Impact factor: 6.556

Review 3.  Advances in functional and structural MR image analysis and implementation as FSL.

Authors:  Stephen M Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola De Stefano; J Michael Brady; Paul M Matthews
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

4.  Joint generative model for fMRI/DWI and its application to population studies.

Authors:  Archana Venkataraman; Yogesh Rathi; Marek Kubicki; Carl-Fredrik Westin; Polina Golland
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

5.  Dynamic causal modelling.

Authors:  K J Friston; L Harrison; W Penny
Journal:  Neuroimage       Date:  2003-08       Impact factor: 6.556

6.  Multivariate autoregressive modeling of fMRI time series.

Authors:  L Harrison; W D Penny; K Friston
Journal:  Neuroimage       Date:  2003-08       Impact factor: 6.556

7.  Toward discovery science of human brain function.

Authors:  Bharat B Biswal; Maarten Mennes; Xi-Nian Zuo; Suril Gohel; Clare Kelly; Steve M Smith; Christian F Beckmann; Jonathan S Adelstein; Randy L Buckner; Stan Colcombe; Anne-Marie Dogonowski; Monique Ernst; Damien Fair; Michelle Hampson; Matthew J Hoptman; James S Hyde; Vesa J Kiviniemi; Rolf Kötter; Shi-Jiang Li; Ching-Po Lin; Mark J Lowe; Clare Mackay; David J Madden; Kristoffer H Madsen; Daniel S Margulies; Helen S Mayberg; Katie McMahon; Christopher S Monk; Stewart H Mostofsky; Bonnie J Nagel; James J Pekar; Scott J Peltier; Steven E Petersen; Valentin Riedl; Serge A R B Rombouts; Bart Rypma; Bradley L Schlaggar; Sein Schmidt; Rachael D Seidler; Greg J Siegle; Christian Sorg; Gao-Jun Teng; Juha Veijola; Arno Villringer; Martin Walter; Lihong Wang; Xu-Chu Weng; Susan Whitfield-Gabrieli; Peter Williamson; Christian Windischberger; Yu-Feng Zang; Hong-Ying Zhang; F Xavier Castellanos; Michael P Milham
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

8.  Aberrant "default mode" functional connectivity in schizophrenia.

Authors:  Abigail G Garrity; Godfrey D Pearlson; Kristen McKiernan; Dan Lloyd; Kent A Kiehl; Vince D Calhoun
Journal:  Am J Psychiatry       Date:  2007-03       Impact factor: 18.112

9.  Comparing 3 T and 1.5 T MRI for tracking Alzheimer's disease progression with tensor-based morphometry.

Authors:  April J Ho; Xue Hua; Suh Lee; Alex D Leow; Igor Yanovsky; Boris Gutman; Ivo D Dinov; Natasha Leporé; Jason L Stein; Arthur W Toga; Clifford R Jack; Matt A Bernstein; Eric M Reiman; Danielle J Harvey; John Kornak; Norbert Schuff; Gene E Alexander; Michael W Weiner; Paul M Thompson
Journal:  Hum Brain Mapp       Date:  2010-04       Impact factor: 5.038

10.  Cortical folding patterns and predicting cytoarchitecture.

Authors:  Bruce Fischl; Niranjini Rajendran; Evelina Busa; Jean Augustinack; Oliver Hinds; B T Thomas Yeo; Hartmut Mohlberg; Katrin Amunts; Karl Zilles
Journal:  Cereb Cortex       Date:  2007-12-12       Impact factor: 5.357

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  15 in total

1.  RemBrain: Exploring Dynamic Biospatial Networks with Mosaic Matrices and Mirror Glyphs.

Authors:  Chihua Ma; Filippo Pellolio; Daniel A Llano; Kevin Ambrose Stebbings; Robert V Kenyon; G Elisabeta Marai
Journal:  J Imaging Sci Technol       Date:  2017-11       Impact factor: 0.400

Review 2.  Diffusion magnetic resonance imaging for Brainnetome: a critical review.

Authors:  Nianming Zuo; Jian Cheng; Tianzi Jiang
Journal:  Neurosci Bull       Date:  2012-08       Impact factor: 5.203

3.  Connectomic profiles for individualized resting state networks and regions of interest.

Authors:  Kaiming Li; Jason Langley; Zhihao Li; Xiaoping P Hu
Journal:  Brain Connect       Date:  2014-09-25

4.  A linear model for characterization of synchronization frequencies of neural networks.

Authors:  Peili Lv; Xintao Hu; Jinglei Lv; Junwei Han; Lei Guo; Tianming Liu
Journal:  Cogn Neurodyn       Date:  2013-07-23       Impact factor: 5.082

5.  Meta-analysis of functional roles of DICCCOLs.

Authors:  Yixuan Yuan; Xi Jiang; Dajiang Zhu; Hanbo Chen; Kaiming Li; Peili Lv; Xiang Yu; Xiaojin Li; Shu Zhang; Tuo Zhang; Xintao Hu; Junwei Han; Lei Guo; Tianming Liu
Journal:  Neuroinformatics       Date:  2013-01

Review 6.  Survey of encoding and decoding of visual stimulus via FMRI: an image analysis perspective.

Authors:  Mo Chen; Junwei Han; Xintao Hu; Xi Jiang; Lei Guo; Tianming Liu
Journal:  Brain Imaging Behav       Date:  2014-03       Impact factor: 3.978

7.  Anatomy-guided Dense Individualized and Common Connectivity-based Cortical Landmarks (A-DICCCOL).

Authors:  Xi Jiang; Tuo Zhang; Dajiang Zhu; Kaiming Li; Hanbo Chen; Jinglei Lv; Xintao Hu; Junwei Han; Dinggang Shen; Lei Guo; Tianming Liu
Journal:  IEEE Trans Biomed Eng       Date:  2014-11-20       Impact factor: 4.538

8.  Group-wise FMRI activation detection on DICCCOL landmarks.

Authors:  Jinglei Lv; Lei Guo; Dajiang Zhu; Tuo Zhang; Xintao Hu; Junwei Han; Tianming Liu
Journal:  Neuroinformatics       Date:  2014-10

9.  Characterization of task-free and task-performance brain states via functional connectome patterns.

Authors:  Xin Zhang; Lei Guo; Xiang Li; Tuo Zhang; Dajiang Zhu; Kaiming Li; Hanbo Chen; Jinglei Lv; Changfeng Jin; Qun Zhao; Lingjiang Li; Tianming Liu
Journal:  Med Image Anal       Date:  2013-07-24       Impact factor: 8.545

10.  Predicting cortical ROIs via joint modeling of anatomical and connectional profiles.

Authors:  Tuo Zhang; Dajiang Zhu; Xi Jiang; Bao Ge; Xintao Hu; Junwei Han; Lei Guo; Tianming Liu
Journal:  Med Image Anal       Date:  2013-04-12       Impact factor: 8.545

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