Literature DB >> 22414578

MetaPath: an electronic knowledge base for collating, exchanging and analyzing case studies of xenobiotic metabolism.

Richard C Kolanczyk1, Patricia Schmieder, William J Jones, Ovanes G Mekenyan, Atanas Chapkanov, Stanislav Temelkov, Stefan Kotov, Maria Velikova, Verginia Kamenska, Krasimir Vasilev, Gilman D Veith.   

Abstract

The MetaPath knowledge base was developed for the purpose of archiving, sharing and analyzing experimental data on metabolism, metabolic pathways and crucial supporting metadata. The MetaPath system grew out of the need to compile and organize the results of metabolism studies into a systematic database to facilitate data comparisons and evaluations. Specialized MetaPath data evaluation tools facilitate the review of pesticide metabolism data submitted for regulatory risk assessments as well as exchange of results of complex analyses used in regulation and research. Customized screen editors called Composers were developed to automate data entry into MetaPath while also streamlining the production of agency specific study summaries such as the Data Evaluation Records (DER) used by the US EPA Office of Pesticide Programs. Efforts are underway through an Organization for Economic Co-operation and Development (OECD) work group to extend the use of DER Composers as harmonized templates for rat metabolism, livestock residue, plant residue and environmental degradation studies. Published by Elsevier Inc.

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Year:  2012        PMID: 22414578     DOI: 10.1016/j.yrtph.2012.02.013

Source DB:  PubMed          Journal:  Regul Toxicol Pharmacol        ISSN: 0273-2300            Impact factor:   3.271


  8 in total

1.  A comparison of fish pesticide metabolic pathways with those of the rat and goat.

Authors:  Richard C Kolanczyk; Jose A Serrano; Mark A Tapper; Patricia K Schmieder
Journal:  Regul Toxicol Pharmacol       Date:  2018-02-06       Impact factor: 3.271

Review 2.  Comparative metabolism as a key driver of wildlife species sensitivity to human and veterinary pharmaceuticals.

Authors:  Thomas H Hutchinson; Judith C Madden; Vinny Naidoo; Colin H Walker
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-11-19       Impact factor: 6.237

3.  Retrospective mining of toxicology data to discover multispecies and chemical class effects: Anemia as a case study.

Authors:  Richard S Judson; Matthew T Martin; Grace Patlewicz; Charles E Wood
Journal:  Regul Toxicol Pharmacol       Date:  2017-02-24       Impact factor: 3.271

4.  Characterization and analysis of estrogenic cyclic phenone metabolites produced in vitro by rainbow trout liver slices using GC-MS, LC-MS and LC-TOF-MS.

Authors:  Jose Serrano; Richard C Kolanczyk; Mark A Tapper; Tylor Lahren; Nagaraju Dongari; Dean E Hammermeister; Patricia A Kosian; Patricia K Schmieder; Barbara R Sheedy; Katie Challis; Alena Kubátová
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2019-08-11       Impact factor: 3.205

5.  Scientific Opinion of the Scientific Panel on Plant Protection Products and their Residues (PPR Panel) on testing and interpretation of comparative in vitro metabolism studies.

Authors:  Antonio F Hernandez-Jerez; Paulien Adriaanse; Annette Aldrich; Philippe Berny; Tamara Coja; Sabine Duquesne; Andreas Focks; Marina Marinovich; Maurice Millet; Olavi Pelkonen; Silvia Pieper; Aaldrik Tiktak; Christopher J Topping; Anneli Widenfalk; Martin Wilks; Gerrit Wolterink; Ursula Gundert-Remy; Jochem Louisse; Serge Rudaz; Emanuela Testai; Alfonso Lostia; Jean-Lou Dorne; Juan Manuel Parra Morte
Journal:  EFSA J       Date:  2021-12-23

Review 6.  Candidate Proficiency Test Chemicals to Address Industrial Chemical Applicability Domains for in vitro Human Cytochrome P450 Enzyme Induction.

Authors:  Miriam Naomi Jacobs; Barbara Kubickova; Eugene Boshoff
Journal:  Front Toxicol       Date:  2022-06-20

7.  enviPath--The environmental contaminant biotransformation pathway resource.

Authors:  Jörg Wicker; Tim Lorsbach; Martin Gütlein; Emanuel Schmid; Diogo Latino; Stefan Kramer; Kathrin Fenner
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

8.  XMetDB: an open access database for xenobiotic metabolism.

Authors:  Ola Spjuth; Patrik Rydberg; Egon L Willighagen; Chris T Evelo; Nina Jeliazkova
Journal:  J Cheminform       Date:  2016-09-15       Impact factor: 5.514

  8 in total

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