Literature DB >> 22412753

2,6-Bis[(S)-1-phenyl-eth-yl]-1H,5H-pyrrolo-[3,4-f]isoindole-1,3,5,7(2H,6H)-tetrone.

Alaa A-M Abdel-Aziz, Adel S El-Azab, Amer M Alanazi, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(26)H(20)N(2)O(4), the central isoindole core is almost planar (r.m.s. deviation = 0.043 Å). The phenyl rings lie to either side of the plane [dihedral angles = 88.64 (5) and 67.74 (6)°] and the dihedral angle between the phenyl rings is 63.39 (7)°. In the crystal, mol-ecules are linked by C-H⋯O inter-actions; notably, one carbonyl O atom accepts three such bonds.

Entities:  

Year:  2012        PMID: 22412753      PMCID: PMC3297950          DOI: 10.1107/S1600536812007684

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of cyclic imides including that of the title compound, see: Abdel-Aziz (2007 ▶); Abdel-Aziz, El-Azab et al. (2011 ▶); Abdel-Aziz, ElTahir et al. (2011 ▶).

Experimental

Crystal data

C26H20N2O4 M = 424.44 Monoclinic, a = 5.6401 (1) Å b = 16.1040 (2) Å c = 11.3759 (2) Å β = 99.762 (2)° V = 1018.29 (3) Å3 Z = 2 Cu Kα radiation μ = 0.77 mm−1 T = 100 K 0.30 × 0.25 × 0.20 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.656, T max = 1.000 7858 measured reflections 4093 independent reflections 4091 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.099 S = 1.11 4093 reflections 289 parameters 1 restraint H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.25 e Å−3 Absolute structure: Flack (1983 ▶), 1898 Friedel pairs Flack parameter: 0.08 (12) Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO ; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812007684/bt5823sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007684/bt5823Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007684/bt5823Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H20N2O4F(000) = 444
Mr = 424.44Dx = 1.384 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.5418 Å
Hall symbol: P 2ybCell parameters from 6911 reflections
a = 5.6401 (1) Åθ = 2.7–76.5°
b = 16.1040 (2) ŵ = 0.77 mm1
c = 11.3759 (2) ÅT = 100 K
β = 99.762 (2)°Prism, colourless
V = 1018.29 (3) Å30.30 × 0.25 × 0.20 mm
Z = 2
Agilent SuperNova Dual diffractometer with an Atlas detector4093 independent reflections
Radiation source: SuperNova (Cu) X-ray Source4091 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.018
Detector resolution: 10.4041 pixels mm-1θmax = 76.7°, θmin = 3.9°
ω scanh = −7→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −20→20
Tmin = 0.656, Tmax = 1.000l = −14→13
7858 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.099w = 1/[σ2(Fo2) + (0.0781P)2 + 0.0806P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max < 0.001
4093 reflectionsΔρmax = 0.24 e Å3
289 parametersΔρmin = −0.25 e Å3
1 restraintAbsolute structure: Flack (1983), 1898 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.08 (12)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.21322 (17)0.49962 (6)0.84958 (9)0.0190 (2)
O20.52962 (18)0.42601 (6)1.05125 (9)0.0204 (2)
O3−0.18870 (17)0.21623 (6)0.51186 (8)0.0194 (2)
O40.55058 (17)0.13790 (6)0.71548 (9)0.0198 (2)
N10.1580 (2)0.48014 (7)0.97059 (10)0.0157 (2)
N20.1824 (2)0.15891 (7)0.59322 (10)0.0154 (2)
C10.1785 (2)0.63194 (8)0.97086 (11)0.0156 (3)
C20.0123 (3)0.69641 (9)0.96693 (13)0.0197 (3)
H2−0.11510.69241.01160.024*
C30.0320 (3)0.76653 (9)0.89804 (14)0.0224 (3)
H3−0.08290.80990.89540.027*
C40.2184 (3)0.77357 (9)0.83304 (13)0.0214 (3)
H40.23270.82190.78700.026*
C50.3837 (2)0.70929 (10)0.83595 (12)0.0212 (3)
H50.51060.71330.79090.025*
C60.3636 (2)0.63922 (9)0.90455 (12)0.0184 (3)
H60.47760.59560.90630.022*
C70.1695 (2)0.55439 (8)1.04732 (11)0.0158 (3)
H70.32700.55171.10290.019*
C8−0.0248 (3)0.55292 (10)1.12469 (13)0.0211 (3)
H8A−0.01500.50071.16960.032*
H8B−0.18310.55731.07400.032*
H8C−0.00170.59981.18040.032*
C9−0.0287 (2)0.46074 (8)0.87821 (11)0.0153 (3)
C100.0478 (2)0.38325 (8)0.82149 (12)0.0146 (3)
C110.2743 (2)0.36088 (8)0.88183 (11)0.0142 (3)
C120.3478 (2)0.42320 (8)0.97899 (12)0.0150 (3)
C130.4002 (2)0.29243 (8)0.85060 (11)0.0147 (3)
H130.55380.27670.89270.018*
C140.2814 (2)0.24907 (8)0.75224 (12)0.0141 (2)
C150.0553 (2)0.27140 (8)0.69167 (11)0.0144 (3)
C16−0.0710 (2)0.33948 (9)0.72418 (12)0.0151 (3)
H16−0.22580.35470.68310.018*
C17−0.0107 (2)0.21467 (8)0.58745 (12)0.0150 (3)
C180.3646 (2)0.17566 (8)0.68996 (11)0.0146 (2)
C190.2125 (2)0.09707 (8)0.50044 (12)0.0158 (3)
H190.37190.06980.52680.019*
C200.2275 (3)0.14171 (9)0.38372 (12)0.0201 (3)
H20A0.35340.18430.39780.030*
H20B0.07260.16800.35330.030*
H20C0.26620.10160.32510.030*
C210.0229 (2)0.02911 (8)0.49308 (12)0.0164 (3)
C22−0.1846 (3)0.02927 (9)0.40638 (12)0.0189 (3)
H22−0.21020.07270.34910.023*
C23−0.3546 (3)−0.03401 (9)0.40349 (13)0.0207 (3)
H23−0.4949−0.03360.34400.025*
C24−0.3199 (3)−0.09748 (9)0.48692 (14)0.0218 (3)
H24−0.4374−0.13990.48570.026*
C25−0.1120 (3)−0.09870 (9)0.57237 (14)0.0249 (3)
H25−0.0862−0.14250.62910.030*
C260.0579 (3)−0.03601 (10)0.57488 (12)0.0217 (3)
H260.2000−0.03750.63320.026*
U11U22U33U12U13U23
O10.0176 (4)0.0184 (5)0.0201 (5)0.0040 (4)0.0006 (3)−0.0031 (4)
O20.0200 (5)0.0155 (5)0.0229 (5)−0.0003 (4)−0.0038 (4)−0.0023 (4)
O30.0173 (5)0.0189 (5)0.0201 (5)0.0021 (4)−0.0022 (4)−0.0031 (4)
O40.0201 (5)0.0184 (5)0.0195 (4)0.0061 (4)−0.0005 (4)−0.0008 (4)
N10.0179 (5)0.0116 (6)0.0170 (5)0.0003 (4)0.0013 (4)−0.0026 (4)
N20.0164 (5)0.0135 (5)0.0156 (5)0.0013 (4)0.0009 (4)−0.0017 (4)
C10.0153 (6)0.0133 (6)0.0173 (6)−0.0007 (5)−0.0001 (4)−0.0050 (5)
C20.0197 (6)0.0158 (7)0.0245 (7)0.0008 (5)0.0064 (5)−0.0033 (5)
C30.0242 (7)0.0131 (6)0.0280 (7)0.0039 (5)−0.0011 (6)−0.0022 (5)
C40.0260 (7)0.0161 (7)0.0199 (6)−0.0032 (5)−0.0022 (5)−0.0006 (5)
C50.0212 (7)0.0234 (7)0.0188 (6)−0.0040 (6)0.0032 (5)−0.0036 (5)
C60.0162 (6)0.0180 (7)0.0207 (6)0.0017 (5)0.0023 (5)−0.0042 (5)
C70.0182 (6)0.0119 (6)0.0168 (6)−0.0008 (5)0.0014 (4)−0.0041 (5)
C80.0243 (7)0.0191 (6)0.0208 (6)−0.0041 (5)0.0060 (5)−0.0033 (5)
C90.0183 (6)0.0127 (6)0.0146 (6)−0.0019 (5)0.0023 (5)0.0004 (5)
C100.0161 (6)0.0115 (6)0.0163 (6)0.0001 (5)0.0030 (5)0.0006 (5)
C110.0154 (6)0.0125 (6)0.0141 (6)−0.0028 (5)0.0012 (5)0.0012 (5)
C120.0173 (6)0.0108 (6)0.0169 (6)−0.0020 (5)0.0024 (5)0.0011 (5)
C130.0146 (6)0.0136 (6)0.0155 (6)−0.0009 (5)0.0015 (4)0.0013 (5)
C140.0159 (6)0.0112 (6)0.0155 (5)−0.0007 (5)0.0030 (4)0.0037 (5)
C150.0150 (6)0.0129 (6)0.0149 (6)−0.0019 (5)0.0014 (4)0.0004 (4)
C160.0145 (6)0.0133 (6)0.0166 (6)0.0009 (5)0.0004 (4)0.0011 (4)
C170.0163 (6)0.0125 (6)0.0160 (6)−0.0002 (5)0.0025 (4)−0.0013 (5)
C180.0156 (6)0.0143 (6)0.0139 (6)−0.0013 (5)0.0028 (4)0.0018 (5)
C190.0169 (6)0.0144 (6)0.0163 (6)0.0015 (5)0.0033 (4)−0.0046 (5)
C200.0235 (6)0.0193 (7)0.0180 (6)−0.0019 (5)0.0045 (5)−0.0021 (5)
C210.0196 (6)0.0133 (6)0.0162 (6)0.0019 (5)0.0027 (5)−0.0035 (5)
C220.0204 (6)0.0148 (6)0.0205 (6)0.0022 (5)0.0007 (5)0.0004 (5)
C230.0184 (6)0.0190 (7)0.0232 (7)0.0014 (5)−0.0011 (5)−0.0039 (5)
C240.0239 (6)0.0157 (7)0.0260 (7)−0.0019 (5)0.0046 (5)−0.0024 (5)
C250.0316 (7)0.0196 (7)0.0223 (7)−0.0027 (6)0.0012 (6)0.0040 (5)
C260.0238 (7)0.0203 (7)0.0189 (6)−0.0003 (6)−0.0024 (5)0.0005 (5)
O1—C91.2111 (17)C10—C161.3855 (19)
O2—C121.2017 (16)C10—C111.3915 (18)
O3—C171.2062 (16)C11—C131.3897 (19)
O4—C181.2049 (16)C11—C121.4984 (18)
N1—C91.3911 (16)C13—C141.3909 (18)
N1—C121.4004 (17)C13—H130.9500
N1—C71.4754 (16)C14—C151.3902 (18)
N2—C181.3986 (16)C14—C181.4941 (18)
N2—C171.4046 (16)C15—C161.3913 (18)
N2—C191.4815 (16)C15—C171.4930 (17)
C1—C61.3928 (18)C16—H160.9500
C1—C21.3945 (18)C19—C211.5222 (19)
C1—C71.5276 (18)C19—C201.5249 (18)
C2—C31.390 (2)C19—H191.0000
C2—H20.9500C20—H20A0.9800
C3—C41.389 (2)C20—H20B0.9800
C3—H30.9500C20—H20C0.9800
C4—C51.390 (2)C21—C261.394 (2)
C4—H40.9500C21—C221.3970 (18)
C5—C61.388 (2)C22—C231.396 (2)
C5—H50.9500C22—H220.9500
C6—H60.9500C23—C241.386 (2)
C7—C81.5175 (18)C23—H230.9500
C7—H71.0000C24—C251.391 (2)
C8—H8A0.9800C24—H240.9500
C8—H8B0.9800C25—C261.389 (2)
C8—H8C0.9800C25—H250.9500
C9—C101.5012 (18)C26—H260.9500
C9—N1—C12112.10 (11)C11—C13—C14113.97 (11)
C9—N1—C7125.51 (11)C11—C13—H13123.0
C12—N1—C7122.27 (11)C14—C13—H13123.0
C18—N2—C17111.95 (11)C15—C14—C13123.06 (12)
C18—N2—C19122.19 (11)C15—C14—C18107.76 (11)
C17—N2—C19125.31 (11)C13—C14—C18129.16 (12)
C6—C1—C2118.78 (13)C14—C15—C16122.69 (12)
C6—C1—C7118.53 (11)C14—C15—C17108.64 (11)
C2—C1—C7122.67 (12)C16—C15—C17128.56 (12)
C3—C2—C1120.37 (13)C10—C16—C15114.41 (11)
C3—C2—H2119.8C10—C16—H16122.8
C1—C2—H2119.8C15—C16—H16122.8
C4—C3—C2120.44 (13)O3—C17—N2126.28 (12)
C4—C3—H3119.8O3—C17—C15128.21 (12)
C2—C3—H3119.8N2—C17—C15105.50 (10)
C3—C4—C5119.48 (13)O4—C18—N2125.85 (13)
C3—C4—H4120.3O4—C18—C14128.01 (12)
C5—C4—H4120.3N2—C18—C14106.14 (11)
C6—C5—C4120.03 (13)N2—C19—C21111.00 (10)
C6—C5—H5120.0N2—C19—C20109.47 (11)
C4—C5—H5120.0C21—C19—C20115.67 (11)
C5—C6—C1120.89 (13)N2—C19—H19106.7
C5—C6—H6119.6C21—C19—H19106.7
C1—C6—H6119.6C20—C19—H19106.7
N1—C7—C8111.52 (11)C19—C20—H20A109.5
N1—C7—C1109.15 (10)C19—C20—H20B109.5
C8—C7—C1116.11 (11)H20A—C20—H20B109.5
N1—C7—H7106.5C19—C20—H20C109.5
C8—C7—H7106.5H20A—C20—H20C109.5
C1—C7—H7106.5H20B—C20—H20C109.5
C7—C8—H8A109.5C26—C21—C22118.67 (13)
C7—C8—H8B109.5C26—C21—C19119.05 (12)
H8A—C8—H8B109.5C22—C21—C19122.29 (12)
C7—C8—H8C109.5C23—C22—C21120.35 (13)
H8A—C8—H8C109.5C23—C22—H22119.8
H8B—C8—H8C109.5C21—C22—H22119.8
O1—C9—N1126.36 (13)C24—C23—C22120.37 (12)
O1—C9—C10127.63 (12)C24—C23—H23119.8
N1—C9—C10106.01 (11)C22—C23—H23119.8
C16—C10—C11122.80 (12)C23—C24—C25119.57 (13)
C16—C10—C9129.12 (12)C23—C24—H24120.2
C11—C10—C9108.05 (11)C25—C24—H24120.2
C13—C11—C10123.07 (12)C26—C25—C24120.09 (13)
C13—C11—C12129.09 (12)C26—C25—H25120.0
C10—C11—C12107.84 (11)C24—C25—H25120.0
O2—C12—N1125.16 (13)C25—C26—C21120.93 (13)
O2—C12—C11128.83 (13)C25—C26—H26119.5
N1—C12—C11106.01 (10)C21—C26—H26119.5
C6—C1—C2—C3−0.06 (19)C13—C14—C15—C160.31 (19)
C7—C1—C2—C3178.47 (13)C18—C14—C15—C16−177.85 (11)
C1—C2—C3—C4−0.5 (2)C13—C14—C15—C17176.77 (11)
C2—C3—C4—C50.9 (2)C18—C14—C15—C17−1.39 (14)
C3—C4—C5—C6−0.8 (2)C11—C10—C16—C15−0.13 (18)
C4—C5—C6—C10.2 (2)C9—C10—C16—C15177.67 (12)
C2—C1—C6—C50.21 (19)C14—C15—C16—C100.26 (18)
C7—C1—C6—C5−178.38 (12)C17—C15—C16—C10−175.45 (12)
C9—N1—C7—C866.11 (16)C18—N2—C17—O3177.94 (13)
C12—N1—C7—C8−118.32 (13)C19—N2—C17—O36.4 (2)
C9—N1—C7—C1−63.51 (15)C18—N2—C17—C15−0.74 (14)
C12—N1—C7—C1112.06 (13)C19—N2—C17—C15−172.31 (12)
C6—C1—C7—N1−57.40 (14)C14—C15—C17—O3−177.32 (13)
C2—C1—C7—N1124.07 (13)C16—C15—C17—O3−1.1 (2)
C6—C1—C7—C8175.54 (12)C14—C15—C17—N21.33 (13)
C2—C1—C7—C8−2.99 (18)C16—C15—C17—N2177.52 (12)
C12—N1—C9—O1−179.01 (13)C17—N2—C18—O4−179.55 (12)
C7—N1—C9—O1−3.1 (2)C19—N2—C18—O4−7.7 (2)
C12—N1—C9—C100.25 (14)C17—N2—C18—C14−0.08 (14)
C7—N1—C9—C10176.20 (11)C19—N2—C18—C14171.80 (11)
O1—C9—C10—C160.9 (2)C15—C14—C18—O4−179.61 (13)
N1—C9—C10—C16−178.40 (13)C13—C14—C18—O42.4 (2)
O1—C9—C10—C11178.91 (13)C15—C14—C18—N20.93 (14)
N1—C9—C10—C11−0.33 (13)C13—C14—C18—N2−177.07 (12)
C16—C10—C11—C13−0.58 (19)C18—N2—C19—C21120.96 (13)
C9—C10—C11—C13−178.79 (12)C17—N2—C19—C21−68.29 (16)
C16—C10—C11—C12178.50 (12)C18—N2—C19—C20−110.14 (13)
C9—C10—C11—C120.29 (13)C17—N2—C19—C2060.61 (16)
C9—N1—C12—O2−179.90 (13)N2—C19—C21—C26−81.30 (15)
C7—N1—C12—O24.0 (2)C20—C19—C21—C26153.20 (13)
C9—N1—C12—C11−0.07 (14)N2—C19—C21—C2299.25 (14)
C7—N1—C12—C11−176.18 (11)C20—C19—C21—C22−26.25 (18)
C13—C11—C12—O2−1.3 (2)C26—C21—C22—C231.0 (2)
C10—C11—C12—O2179.68 (13)C19—C21—C22—C23−179.51 (12)
C13—C11—C12—N1178.86 (12)C21—C22—C23—C240.3 (2)
C10—C11—C12—N1−0.15 (13)C22—C23—C24—C25−1.2 (2)
C10—C11—C13—C141.07 (18)C23—C24—C25—C260.9 (2)
C12—C11—C13—C14−177.80 (12)C24—C25—C26—C210.5 (2)
C11—C13—C14—C15−0.94 (18)C22—C21—C26—C25−1.4 (2)
C11—C13—C14—C18176.79 (12)C19—C21—C26—C25179.11 (13)
D—H···AD—HH···AD···AD—H···A
C6—H6···O1i0.952.503.4129 (16)162
C7—H7···O4ii1.002.493.1840 (16)126
C20—H20C···O1iii0.982.563.4948 (17)161
C23—H23···O1iv0.952.573.4847 (18)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O1i0.952.503.4129 (16)162
C7—H7⋯O4ii1.002.493.1840 (16)126
C20—H20C⋯O1iii0.982.563.4948 (17)161
C23—H23⋯O1iv0.952.573.4847 (18)161

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, anti-inflammatory activity and COX-1/COX-2 inhibition of novel substituted cyclic imides. Part 1: Molecular docking study.

Authors:  Alaa A-M Abdel-Aziz; Kamal E H ElTahir; Yousif A Asiri
Journal:  Eur J Med Chem       Date:  2011-02-15       Impact factor: 6.514

3.  Synthesis and biological evaluation of some novel cyclic-imides as hypoglycaemic, anti-hyperlipidemic agents.

Authors:  Alaa A-M Abdel-Aziz; Adel S El-Azab; Sabry M Attia; Abdulrahman M Al-Obaid; Mohamed A Al-Omar; Hussein I El-Subbagh
Journal:  Eur J Med Chem       Date:  2011-07-08       Impact factor: 6.514

4.  Novel and versatile methodology for synthesis of cyclic imides and evaluation of their cytotoxic, DNA binding, apoptotic inducing activities and molecular modeling study.

Authors:  Alaa A-M Abdel-Aziz
Journal:  Eur J Med Chem       Date:  2006-12-10       Impact factor: 6.514

  4 in total

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