Literature DB >> 22412745

2-[(3R,6R)-6-Methyl-2,5-dioxomorph-olin-3-yl]-N-(propan-2-yl)acetamide.

De-Dai Lu1, Hu Zhang, Juan Luo, Li-Qiang Yang, Peng-Xue Duan.   

Abstract

The molecular conformation of the title compound, C(10)H(16)N(2)O(4), is determined by an intra-molecular N-H⋯O hydrogen bond involving the morpholine NH group and the amide O atom. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds into chains along the a-axis direction.

Entities:  

Year:  2012        PMID: 22412745      PMCID: PMC3297942          DOI: 10.1107/S1600536812007945

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of polydepsipeptides, see: Feng et al. (2002 ▶); Hughes & Sleebs (2005 ▶); In’t Veld et al. (1992 ▶,1994 ▶); Jörres et al. (1998 ▶). For the synthesis of title compound, see: Wang & Feng (1997 ▶).

Experimental

Crystal data

C10H16N2O4 M = 228.25 Monoclinic, a = 8.038 (3) Å b = 5.678 (2) Å c = 12.656 (5) Å β = 105.476 (4)° V = 556.6 (3) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.28 × 0.26 × 0.24 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.971, T max = 0.975 3796 measured reflections 1111 independent reflections 973 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.085 S = 1.16 1111 reflections 153 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.13 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812007945/yk2036sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007945/yk2036Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007945/yk2036Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H16N2O4F(000) = 244
Mr = 228.25Dx = 1.362 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2019 reflections
a = 8.038 (3) Åθ = 2.6–28.4°
b = 5.678 (2) ŵ = 0.11 mm1
c = 12.656 (5) ÅT = 296 K
β = 105.476 (4)°Block, colourless
V = 556.6 (3) Å30.28 × 0.26 × 0.24 mm
Z = 2
Bruker APEXII CCD diffractometer1111 independent reflections
Radiation source: fine-focus sealed tube973 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
φ and ω scansθmax = 25.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→8
Tmin = 0.971, Tmax = 0.975k = −6→6
3796 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.085H atoms treated by a mixture of independent and constrained refinement
S = 1.16w = 1/[σ2(Fo2) + (0.0381P)2 + 0.0663P] where P = (Fo2 + 2Fc2)/3
1111 reflections(Δ/σ)max < 0.001
153 parametersΔρmax = 0.13 e Å3
1 restraintΔρmin = −0.13 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3090 (3)0.0143 (5)0.7877 (2)0.0396 (6)
H1N0.303 (3)−0.121 (7)0.759 (2)0.041 (9)*
O10.0310 (2)0.0204 (5)0.78753 (18)0.0587 (6)
C20.1717 (3)0.1165 (6)0.8051 (2)0.0395 (7)
N20.7140 (3)−0.2115 (4)0.66322 (19)0.0384 (6)
H2N0.803 (4)−0.138 (6)0.691 (2)0.041 (9)*
O20.6493 (2)0.3811 (4)0.93137 (16)0.0480 (6)
C30.1981 (3)0.3664 (6)0.8450 (2)0.0425 (7)
H3A0.18030.46990.78100.051*
O30.3725 (2)0.4038 (4)0.91393 (15)0.0426 (5)
O40.4538 (2)−0.3182 (4)0.67977 (16)0.0500 (6)
C50.5079 (3)0.3148 (5)0.8859 (2)0.0343 (7)
C60.4708 (3)0.1354 (5)0.7952 (2)0.0310 (6)
H6A0.46070.21840.72590.037*
C70.0782 (4)0.4419 (7)0.9102 (3)0.0641 (11)
H7A0.10230.60230.93320.096*
H7B0.09390.34260.97350.096*
H7C−0.03880.42950.86590.096*
C80.6152 (3)−0.0437 (5)0.8098 (2)0.0351 (7)
H8A0.72440.03800.82030.042*
H8B0.6210−0.13700.87490.042*
C90.5878 (3)−0.2038 (5)0.7122 (2)0.0355 (7)
C100.7090 (3)−0.3549 (6)0.5672 (2)0.0409 (7)
H10A0.5898−0.35780.52110.049*
C110.8204 (5)−0.2421 (7)0.5025 (3)0.0704 (11)
H11A0.7822−0.08360.48390.106*
H11B0.8118−0.33060.43660.106*
H11C0.9384−0.24030.54580.106*
C120.7629 (5)−0.6010 (7)0.5983 (3)0.0634 (10)
H12A0.6895−0.66720.63920.095*
H12B0.8803−0.60230.64240.095*
H12C0.7538−0.69270.53320.095*
U11U22U33U12U13U23
N10.0359 (13)0.0329 (15)0.0509 (16)−0.0098 (12)0.0133 (11)−0.0121 (14)
O10.0304 (11)0.0629 (16)0.0810 (15)−0.0155 (11)0.0121 (10)−0.0133 (14)
C20.0326 (15)0.0445 (19)0.0402 (15)−0.0056 (14)0.0077 (12)−0.0024 (14)
N20.0345 (13)0.0397 (15)0.0424 (14)−0.0085 (12)0.0127 (11)−0.0152 (12)
O20.0342 (10)0.0475 (13)0.0588 (12)−0.0081 (11)0.0064 (9)−0.0169 (11)
C30.0330 (14)0.0476 (19)0.0453 (17)−0.0025 (15)0.0073 (12)−0.0029 (15)
O30.0322 (9)0.0479 (13)0.0481 (11)−0.0059 (10)0.0115 (8)−0.0154 (10)
O40.0389 (11)0.0542 (15)0.0574 (13)−0.0152 (11)0.0138 (9)−0.0229 (12)
C50.0346 (15)0.0343 (18)0.0359 (14)−0.0045 (13)0.0125 (11)0.0009 (13)
C60.0299 (13)0.0330 (16)0.0305 (14)−0.0062 (12)0.0088 (10)−0.0015 (13)
C70.0410 (17)0.077 (3)0.077 (2)−0.0029 (19)0.0215 (15)−0.028 (2)
C80.0330 (14)0.0361 (18)0.0351 (14)−0.0045 (13)0.0072 (11)−0.0050 (13)
C90.0340 (14)0.0340 (17)0.0375 (15)−0.0004 (13)0.0077 (11)−0.0011 (14)
C100.0370 (15)0.0457 (19)0.0394 (16)0.0007 (15)0.0091 (12)−0.0102 (15)
C110.112 (3)0.051 (2)0.063 (2)−0.001 (2)0.050 (2)−0.003 (2)
C120.091 (3)0.039 (2)0.069 (2)0.002 (2)0.035 (2)−0.0075 (19)
N1—C21.317 (4)C6—H6A0.9800
N1—C61.452 (3)C7—H7A0.9600
N1—H1N0.85 (4)C7—H7B0.9600
O1—C21.222 (3)C7—H7C0.9600
C2—C31.502 (5)C8—C91.502 (4)
N2—C91.323 (3)C8—H8A0.9700
N2—C101.454 (4)C8—H8B0.9700
N2—H2N0.82 (3)C10—C121.485 (5)
O2—C51.190 (3)C10—C111.508 (4)
C3—O31.456 (3)C10—H10A0.9800
C3—C71.489 (4)C11—H11A0.9600
C3—H3A0.9800C11—H11B0.9600
O3—C51.331 (3)C11—H11C0.9600
O4—C91.231 (3)C12—H12A0.9600
C5—C61.504 (4)C12—H12B0.9600
C6—C81.517 (4)C12—H12C0.9600
C2—N1—C6123.8 (3)H7A—C7—H7C109.5
C2—N1—H1N121.1 (19)H7B—C7—H7C109.5
C6—N1—H1N114.0 (19)C9—C8—C6111.5 (2)
O1—C2—N1123.3 (3)C9—C8—H8A109.3
O1—C2—C3121.6 (3)C6—C8—H8A109.3
N1—C2—C3115.0 (3)C9—C8—H8B109.3
C9—N2—C10123.8 (3)C6—C8—H8B109.3
C9—N2—H2N118 (2)H8A—C8—H8B108.0
C10—N2—H2N118 (2)O4—C9—N2122.6 (3)
O3—C3—C7106.7 (2)O4—C9—C8121.1 (2)
O3—C3—C2111.5 (3)N2—C9—C8116.3 (2)
C7—C3—C2113.8 (3)N2—C10—C12111.4 (3)
O3—C3—H3A108.2N2—C10—C11109.1 (3)
C7—C3—H3A108.2C12—C10—C11111.7 (3)
C2—C3—H3A108.2N2—C10—H10A108.2
C5—O3—C3120.7 (2)C12—C10—H10A108.2
O2—C5—O3119.6 (3)C11—C10—H10A108.2
O2—C5—C6123.5 (2)C10—C11—H11A109.5
O3—C5—C6116.8 (2)C10—C11—H11B109.5
N1—C6—C5111.3 (2)H11A—C11—H11B109.5
N1—C6—C8109.5 (2)C10—C11—H11C109.5
C5—C6—C8111.9 (2)H11A—C11—H11C109.5
N1—C6—H6A108.0H11B—C11—H11C109.5
C5—C6—H6A108.0C10—C12—H12A109.5
C8—C6—H6A108.0C10—C12—H12B109.5
C3—C7—H7A109.5H12A—C12—H12B109.5
C3—C7—H7B109.5C10—C12—H12C109.5
H7A—C7—H7B109.5H12A—C12—H12C109.5
C3—C7—H7C109.5H12B—C12—H12C109.5
C6—N1—C2—O1172.1 (3)O2—C5—C6—N1155.1 (3)
C6—N1—C2—C3−5.8 (4)O3—C5—C6—N1−25.9 (3)
O1—C2—C3—O3149.0 (3)O2—C5—C6—C832.4 (4)
N1—C2—C3—O3−33.1 (3)O3—C5—C6—C8−148.7 (2)
O1—C2—C3—C728.2 (4)N1—C6—C8—C963.2 (3)
N1—C2—C3—C7−153.9 (3)C5—C6—C8—C9−173.0 (2)
C7—C3—O3—C5168.1 (3)C10—N2—C9—O4−0.3 (4)
C2—C3—O3—C543.3 (4)C10—N2—C9—C8−179.4 (3)
C3—O3—C5—O2166.4 (3)C6—C8—C9—O4−55.6 (3)
C3—O3—C5—C6−12.6 (4)C6—C8—C9—N2123.5 (3)
C2—N1—C6—C536.3 (4)C9—N2—C10—C12−83.3 (3)
C2—N1—C6—C8160.4 (2)C9—N2—C10—C11152.9 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O40.85 (4)2.09 (3)2.763 (4)136 (3)
N2—H2N···O1i0.82 (3)2.11 (3)2.926 (3)170 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O40.85 (4)2.09 (3)2.763 (4)136 (3)
N2—H2N⋯O1i0.82 (3)2.11 (3)2.926 (3)170 (3)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Total synthesis of bassiatin and its stereoisomers: novel divergent behavior of substrates in Mitsunobu cyclizations.

Authors:  Andrew B Hughes; Marianne M Sleebs
Journal:  J Org Chem       Date:  2005-04-15       Impact factor: 4.354

  2 in total

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