| Literature DB >> 22412745 |
De-Dai Lu1, Hu Zhang, Juan Luo, Li-Qiang Yang, Peng-Xue Duan.
Abstract
The molecular conformation of the title compound, C(10)H(16)N(2)O(4), is determined by an intra-molecular N-H⋯O hydrogen bond involving the morpholine NH group and the amide O atom. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds into chains along the a-axis direction.Entities:
Year: 2012 PMID: 22412745 PMCID: PMC3297942 DOI: 10.1107/S1600536812007945
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H16N2O4 | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 2019 reflections |
| θ = 2.6–28.4° | |
| µ = 0.11 mm−1 | |
| β = 105.476 (4)° | Block, colourless |
| 0.28 × 0.26 × 0.24 mm | |
| Bruker APEXII CCD diffractometer | 1111 independent reflections |
| Radiation source: fine-focus sealed tube | 973 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.5°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 3796 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1111 reflections | (Δ/σ)max < 0.001 |
| 153 parameters | Δρmax = 0.13 e Å−3 |
| 1 restraint | Δρmin = −0.13 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.3090 (3) | 0.0143 (5) | 0.7877 (2) | 0.0396 (6) | |
| H1N | 0.303 (3) | −0.121 (7) | 0.759 (2) | 0.041 (9)* | |
| O1 | 0.0310 (2) | 0.0204 (5) | 0.78753 (18) | 0.0587 (6) | |
| C2 | 0.1717 (3) | 0.1165 (6) | 0.8051 (2) | 0.0395 (7) | |
| N2 | 0.7140 (3) | −0.2115 (4) | 0.66322 (19) | 0.0384 (6) | |
| H2N | 0.803 (4) | −0.138 (6) | 0.691 (2) | 0.041 (9)* | |
| O2 | 0.6493 (2) | 0.3811 (4) | 0.93137 (16) | 0.0480 (6) | |
| C3 | 0.1981 (3) | 0.3664 (6) | 0.8450 (2) | 0.0425 (7) | |
| H3A | 0.1803 | 0.4699 | 0.7810 | 0.051* | |
| O3 | 0.3725 (2) | 0.4038 (4) | 0.91393 (15) | 0.0426 (5) | |
| O4 | 0.4538 (2) | −0.3182 (4) | 0.67977 (16) | 0.0500 (6) | |
| C5 | 0.5079 (3) | 0.3148 (5) | 0.8859 (2) | 0.0343 (7) | |
| C6 | 0.4708 (3) | 0.1354 (5) | 0.7952 (2) | 0.0310 (6) | |
| H6A | 0.4607 | 0.2184 | 0.7259 | 0.037* | |
| C7 | 0.0782 (4) | 0.4419 (7) | 0.9102 (3) | 0.0641 (11) | |
| H7A | 0.1023 | 0.6023 | 0.9332 | 0.096* | |
| H7B | 0.0939 | 0.3426 | 0.9735 | 0.096* | |
| H7C | −0.0388 | 0.4295 | 0.8659 | 0.096* | |
| C8 | 0.6152 (3) | −0.0437 (5) | 0.8098 (2) | 0.0351 (7) | |
| H8A | 0.7244 | 0.0380 | 0.8203 | 0.042* | |
| H8B | 0.6210 | −0.1370 | 0.8749 | 0.042* | |
| C9 | 0.5878 (3) | −0.2038 (5) | 0.7122 (2) | 0.0355 (7) | |
| C10 | 0.7090 (3) | −0.3549 (6) | 0.5672 (2) | 0.0409 (7) | |
| H10A | 0.5898 | −0.3578 | 0.5211 | 0.049* | |
| C11 | 0.8204 (5) | −0.2421 (7) | 0.5025 (3) | 0.0704 (11) | |
| H11A | 0.7822 | −0.0836 | 0.4839 | 0.106* | |
| H11B | 0.8118 | −0.3306 | 0.4366 | 0.106* | |
| H11C | 0.9384 | −0.2403 | 0.5458 | 0.106* | |
| C12 | 0.7629 (5) | −0.6010 (7) | 0.5983 (3) | 0.0634 (10) | |
| H12A | 0.6895 | −0.6672 | 0.6392 | 0.095* | |
| H12B | 0.8803 | −0.6023 | 0.6424 | 0.095* | |
| H12C | 0.7538 | −0.6927 | 0.5332 | 0.095* |
| N1 | 0.0359 (13) | 0.0329 (15) | 0.0509 (16) | −0.0098 (12) | 0.0133 (11) | −0.0121 (14) |
| O1 | 0.0304 (11) | 0.0629 (16) | 0.0810 (15) | −0.0155 (11) | 0.0121 (10) | −0.0133 (14) |
| C2 | 0.0326 (15) | 0.0445 (19) | 0.0402 (15) | −0.0056 (14) | 0.0077 (12) | −0.0024 (14) |
| N2 | 0.0345 (13) | 0.0397 (15) | 0.0424 (14) | −0.0085 (12) | 0.0127 (11) | −0.0152 (12) |
| O2 | 0.0342 (10) | 0.0475 (13) | 0.0588 (12) | −0.0081 (11) | 0.0064 (9) | −0.0169 (11) |
| C3 | 0.0330 (14) | 0.0476 (19) | 0.0453 (17) | −0.0025 (15) | 0.0073 (12) | −0.0029 (15) |
| O3 | 0.0322 (9) | 0.0479 (13) | 0.0481 (11) | −0.0059 (10) | 0.0115 (8) | −0.0154 (10) |
| O4 | 0.0389 (11) | 0.0542 (15) | 0.0574 (13) | −0.0152 (11) | 0.0138 (9) | −0.0229 (12) |
| C5 | 0.0346 (15) | 0.0343 (18) | 0.0359 (14) | −0.0045 (13) | 0.0125 (11) | 0.0009 (13) |
| C6 | 0.0299 (13) | 0.0330 (16) | 0.0305 (14) | −0.0062 (12) | 0.0088 (10) | −0.0015 (13) |
| C7 | 0.0410 (17) | 0.077 (3) | 0.077 (2) | −0.0029 (19) | 0.0215 (15) | −0.028 (2) |
| C8 | 0.0330 (14) | 0.0361 (18) | 0.0351 (14) | −0.0045 (13) | 0.0072 (11) | −0.0050 (13) |
| C9 | 0.0340 (14) | 0.0340 (17) | 0.0375 (15) | −0.0004 (13) | 0.0077 (11) | −0.0011 (14) |
| C10 | 0.0370 (15) | 0.0457 (19) | 0.0394 (16) | 0.0007 (15) | 0.0091 (12) | −0.0102 (15) |
| C11 | 0.112 (3) | 0.051 (2) | 0.063 (2) | −0.001 (2) | 0.050 (2) | −0.003 (2) |
| C12 | 0.091 (3) | 0.039 (2) | 0.069 (2) | 0.002 (2) | 0.035 (2) | −0.0075 (19) |
| N1—C2 | 1.317 (4) | C6—H6A | 0.9800 |
| N1—C6 | 1.452 (3) | C7—H7A | 0.9600 |
| N1—H1N | 0.85 (4) | C7—H7B | 0.9600 |
| O1—C2 | 1.222 (3) | C7—H7C | 0.9600 |
| C2—C3 | 1.502 (5) | C8—C9 | 1.502 (4) |
| N2—C9 | 1.323 (3) | C8—H8A | 0.9700 |
| N2—C10 | 1.454 (4) | C8—H8B | 0.9700 |
| N2—H2N | 0.82 (3) | C10—C12 | 1.485 (5) |
| O2—C5 | 1.190 (3) | C10—C11 | 1.508 (4) |
| C3—O3 | 1.456 (3) | C10—H10A | 0.9800 |
| C3—C7 | 1.489 (4) | C11—H11A | 0.9600 |
| C3—H3A | 0.9800 | C11—H11B | 0.9600 |
| O3—C5 | 1.331 (3) | C11—H11C | 0.9600 |
| O4—C9 | 1.231 (3) | C12—H12A | 0.9600 |
| C5—C6 | 1.504 (4) | C12—H12B | 0.9600 |
| C6—C8 | 1.517 (4) | C12—H12C | 0.9600 |
| C2—N1—C6 | 123.8 (3) | H7A—C7—H7C | 109.5 |
| C2—N1—H1N | 121.1 (19) | H7B—C7—H7C | 109.5 |
| C6—N1—H1N | 114.0 (19) | C9—C8—C6 | 111.5 (2) |
| O1—C2—N1 | 123.3 (3) | C9—C8—H8A | 109.3 |
| O1—C2—C3 | 121.6 (3) | C6—C8—H8A | 109.3 |
| N1—C2—C3 | 115.0 (3) | C9—C8—H8B | 109.3 |
| C9—N2—C10 | 123.8 (3) | C6—C8—H8B | 109.3 |
| C9—N2—H2N | 118 (2) | H8A—C8—H8B | 108.0 |
| C10—N2—H2N | 118 (2) | O4—C9—N2 | 122.6 (3) |
| O3—C3—C7 | 106.7 (2) | O4—C9—C8 | 121.1 (2) |
| O3—C3—C2 | 111.5 (3) | N2—C9—C8 | 116.3 (2) |
| C7—C3—C2 | 113.8 (3) | N2—C10—C12 | 111.4 (3) |
| O3—C3—H3A | 108.2 | N2—C10—C11 | 109.1 (3) |
| C7—C3—H3A | 108.2 | C12—C10—C11 | 111.7 (3) |
| C2—C3—H3A | 108.2 | N2—C10—H10A | 108.2 |
| C5—O3—C3 | 120.7 (2) | C12—C10—H10A | 108.2 |
| O2—C5—O3 | 119.6 (3) | C11—C10—H10A | 108.2 |
| O2—C5—C6 | 123.5 (2) | C10—C11—H11A | 109.5 |
| O3—C5—C6 | 116.8 (2) | C10—C11—H11B | 109.5 |
| N1—C6—C5 | 111.3 (2) | H11A—C11—H11B | 109.5 |
| N1—C6—C8 | 109.5 (2) | C10—C11—H11C | 109.5 |
| C5—C6—C8 | 111.9 (2) | H11A—C11—H11C | 109.5 |
| N1—C6—H6A | 108.0 | H11B—C11—H11C | 109.5 |
| C5—C6—H6A | 108.0 | C10—C12—H12A | 109.5 |
| C8—C6—H6A | 108.0 | C10—C12—H12B | 109.5 |
| C3—C7—H7A | 109.5 | H12A—C12—H12B | 109.5 |
| C3—C7—H7B | 109.5 | C10—C12—H12C | 109.5 |
| H7A—C7—H7B | 109.5 | H12A—C12—H12C | 109.5 |
| C3—C7—H7C | 109.5 | H12B—C12—H12C | 109.5 |
| C6—N1—C2—O1 | 172.1 (3) | O2—C5—C6—N1 | 155.1 (3) |
| C6—N1—C2—C3 | −5.8 (4) | O3—C5—C6—N1 | −25.9 (3) |
| O1—C2—C3—O3 | 149.0 (3) | O2—C5—C6—C8 | 32.4 (4) |
| N1—C2—C3—O3 | −33.1 (3) | O3—C5—C6—C8 | −148.7 (2) |
| O1—C2—C3—C7 | 28.2 (4) | N1—C6—C8—C9 | 63.2 (3) |
| N1—C2—C3—C7 | −153.9 (3) | C5—C6—C8—C9 | −173.0 (2) |
| C7—C3—O3—C5 | 168.1 (3) | C10—N2—C9—O4 | −0.3 (4) |
| C2—C3—O3—C5 | 43.3 (4) | C10—N2—C9—C8 | −179.4 (3) |
| C3—O3—C5—O2 | 166.4 (3) | C6—C8—C9—O4 | −55.6 (3) |
| C3—O3—C5—C6 | −12.6 (4) | C6—C8—C9—N2 | 123.5 (3) |
| C2—N1—C6—C5 | 36.3 (4) | C9—N2—C10—C12 | −83.3 (3) |
| C2—N1—C6—C8 | 160.4 (2) | C9—N2—C10—C11 | 152.9 (3) |
| H··· | ||||
| N1—H1 | 0.85 (4) | 2.09 (3) | 2.763 (4) | 136 (3) |
| N2—H2 | 0.82 (3) | 2.11 (3) | 2.926 (3) | 170 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1N⋯O4 | 0.85 (4) | 2.09 (3) | 2.763 (4) | 136 (3) |
| N2—H2N⋯O1i | 0.82 (3) | 2.11 (3) | 2.926 (3) | 170 (3) |
Symmetry code: (i) .