| Literature DB >> 22412732 |
Xu Zhang1, Le Yang, Jun-Na Zhang, Wei He.
Abstract
The title compound, C(9)H(10)N(2)O(5), presents a racemic mixture of two enanti-omeric diastereomers. In the crystal, mol-ecules assemble into zigzag chains parallel to the b axis [C(6) motif] due to the formation of elongated O-H⋯O(N) hydrogen bonds. Of inter-est is the fact that only the aliphatic nitro group is involved in hydrogen bonding and it adopts a gauche conformation with respect to the OH group.Entities:
Year: 2012 PMID: 22412732 PMCID: PMC3297929 DOI: 10.1107/S1600536812007775
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H10N2O5 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1711 reflections |
| θ = 2.5–24.3° | |
| µ = 0.12 mm−1 | |
| β = 100.465 (4)° | Prism, colourless |
| 0.40 × 0.28 × 0.14 mm | |
| Bruker APEXII diffractometer | 1868 independent reflections |
| Radiation source: fine-focus sealed tube | 1502 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.333 pixels mm-1 | θmax = 25.1°, θmin = 2.5° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 5155 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1868 reflections | (Δ/σ)max < 0.001 |
| 150 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.16 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.1671 (2) | −0.04487 (15) | 0.18274 (12) | 0.0528 (4) | |
| N2 | 0.3598 (3) | 0.67086 (16) | 0.05631 (16) | 0.0611 (5) | |
| O1 | 0.2260 (2) | −0.09283 (15) | 0.26305 (12) | 0.0718 (5) | |
| O2 | 0.0497 (3) | −0.09303 (15) | 0.12111 (11) | 0.0800 (6) | |
| O3 | 0.0003 (3) | 0.17439 (15) | 0.21466 (14) | 0.0757 (6) | |
| O4 | 0.4510 (3) | 0.72894 (16) | 0.12539 (14) | 0.0886 (6) | |
| O5 | 0.3235 (3) | 0.71279 (16) | −0.02787 (15) | 0.0872 (6) | |
| C1 | 0.3609 (4) | 0.0580 (2) | 0.07942 (18) | 0.0722 (7) | |
| H1A | 0.4478 | −0.0088 | 0.1005 | 0.108* | |
| H1B | 0.4254 | 0.1345 | 0.0684 | 0.108* | |
| H1C | 0.2816 | 0.0334 | 0.0188 | 0.108* | |
| C2 | 0.2477 (3) | 0.08152 (17) | 0.15862 (16) | 0.0522 (5) | |
| H2 | 0.3297 | 0.1121 | 0.2184 | 0.063* | |
| C3 | 0.0905 (3) | 0.17561 (18) | 0.13254 (15) | 0.0512 (5) | |
| H3A | 0.0060 | 0.1456 | 0.0734 | 0.061* | |
| C4 | 0.1629 (3) | 0.30631 (17) | 0.11196 (14) | 0.0464 (5) | |
| C5 | 0.2240 (3) | 0.3894 (2) | 0.18973 (15) | 0.0551 (5) | |
| H5 | 0.2211 | 0.3644 | 0.2546 | 0.066* | |
| C6 | 0.2890 (3) | 0.50863 (19) | 0.17205 (15) | 0.0555 (5) | |
| H6 | 0.3295 | 0.5643 | 0.2243 | 0.067* | |
| C7 | 0.2926 (3) | 0.54335 (17) | 0.07561 (15) | 0.0489 (5) | |
| C8 | 0.2320 (3) | 0.46360 (18) | −0.00374 (15) | 0.0522 (5) | |
| H8 | 0.2347 | 0.4892 | −0.0685 | 0.063* | |
| C9 | 0.1676 (3) | 0.34498 (18) | 0.01569 (15) | 0.0520 (5) | |
| H9 | 0.1266 | 0.2898 | −0.0368 | 0.062* | |
| H3 | −0.076 (4) | 0.230 (3) | 0.209 (2) | 0.103 (11)* |
| N1 | 0.0716 (11) | 0.0402 (9) | 0.0517 (10) | −0.0058 (8) | 0.0245 (9) | −0.0030 (8) |
| N2 | 0.0612 (11) | 0.0396 (10) | 0.0843 (14) | −0.0007 (8) | 0.0185 (10) | 0.0046 (10) |
| O1 | 0.0958 (12) | 0.0593 (10) | 0.0614 (10) | −0.0052 (8) | 0.0171 (8) | 0.0150 (8) |
| O2 | 0.1145 (14) | 0.0619 (10) | 0.0603 (10) | −0.0379 (10) | 0.0069 (9) | −0.0026 (8) |
| O3 | 0.0893 (12) | 0.0504 (9) | 0.1043 (14) | 0.0075 (9) | 0.0623 (11) | 0.0127 (9) |
| O4 | 0.1091 (14) | 0.0488 (10) | 0.1031 (14) | −0.0220 (9) | 0.0061 (11) | −0.0073 (9) |
| O5 | 0.1046 (14) | 0.0596 (10) | 0.0953 (13) | −0.0183 (9) | 0.0122 (11) | 0.0244 (9) |
| C1 | 0.0846 (16) | 0.0519 (13) | 0.0924 (17) | 0.0049 (11) | 0.0487 (14) | 0.0075 (12) |
| C2 | 0.0625 (12) | 0.0343 (10) | 0.0650 (13) | −0.0074 (9) | 0.0251 (10) | −0.0013 (9) |
| C3 | 0.0542 (11) | 0.0440 (11) | 0.0587 (12) | −0.0049 (9) | 0.0191 (9) | 0.0039 (9) |
| C4 | 0.0475 (10) | 0.0385 (10) | 0.0560 (11) | 0.0008 (8) | 0.0168 (9) | 0.0023 (8) |
| C5 | 0.0657 (13) | 0.0511 (12) | 0.0531 (12) | −0.0037 (10) | 0.0233 (10) | 0.0009 (9) |
| C6 | 0.0598 (12) | 0.0486 (11) | 0.0595 (13) | −0.0036 (9) | 0.0151 (10) | −0.0098 (10) |
| C7 | 0.0461 (10) | 0.0336 (10) | 0.0695 (13) | 0.0013 (8) | 0.0176 (9) | 0.0020 (9) |
| C8 | 0.0607 (12) | 0.0430 (11) | 0.0548 (12) | 0.0012 (9) | 0.0155 (9) | 0.0067 (9) |
| C9 | 0.0614 (12) | 0.0405 (11) | 0.0548 (12) | −0.0028 (9) | 0.0126 (9) | −0.0021 (9) |
| N1—O2 | 1.206 (2) | C2—H2 | 0.9800 |
| N1—O1 | 1.215 (2) | C3—C4 | 1.519 (3) |
| N1—C2 | 1.516 (2) | C3—H3A | 0.9800 |
| N2—O5 | 1.217 (2) | C4—C9 | 1.385 (3) |
| N2—O4 | 1.220 (2) | C4—C5 | 1.387 (3) |
| N2—C7 | 1.469 (2) | C5—C6 | 1.378 (3) |
| O3—C3 | 1.407 (2) | C5—H5 | 0.9300 |
| O3—H3 | 0.80 (3) | C6—C7 | 1.374 (3) |
| C1—C2 | 1.505 (3) | C6—H6 | 0.9300 |
| C1—H1A | 0.9600 | C7—C8 | 1.380 (3) |
| C1—H1B | 0.9600 | C8—C9 | 1.377 (3) |
| C1—H1C | 0.9600 | C8—H8 | 0.9300 |
| C2—C3 | 1.519 (3) | C9—H9 | 0.9300 |
| O2—N1—O1 | 123.54 (17) | O3—C3—H3A | 109.4 |
| O2—N1—C2 | 118.50 (17) | C4—C3—H3A | 109.4 |
| O1—N1—C2 | 117.96 (17) | C2—C3—H3A | 109.4 |
| O5—N2—O4 | 123.24 (19) | C9—C4—C5 | 118.93 (17) |
| O5—N2—C7 | 118.44 (19) | C9—C4—C3 | 120.81 (17) |
| O4—N2—C7 | 118.31 (19) | C5—C4—C3 | 120.26 (18) |
| C3—O3—H3 | 110 (2) | C6—C5—C4 | 120.86 (19) |
| C2—C1—H1A | 109.5 | C6—C5—H5 | 119.6 |
| C2—C1—H1B | 109.5 | C4—C5—H5 | 119.6 |
| H1A—C1—H1B | 109.5 | C7—C6—C5 | 118.55 (19) |
| C2—C1—H1C | 109.5 | C7—C6—H6 | 120.7 |
| H1A—C1—H1C | 109.5 | C5—C6—H6 | 120.7 |
| H1B—C1—H1C | 109.5 | C6—C7—C8 | 122.29 (18) |
| C1—C2—N1 | 107.80 (16) | C6—C7—N2 | 118.74 (18) |
| C1—C2—C3 | 116.12 (18) | C8—C7—N2 | 118.96 (18) |
| N1—C2—C3 | 107.79 (16) | C9—C8—C7 | 118.15 (19) |
| C1—C2—H2 | 108.3 | C9—C8—H8 | 120.9 |
| N1—C2—H2 | 108.3 | C7—C8—H8 | 120.9 |
| C3—C2—H2 | 108.3 | C8—C9—C4 | 121.22 (19) |
| O3—C3—C4 | 113.00 (16) | C8—C9—H9 | 119.4 |
| O3—C3—C2 | 105.12 (16) | C4—C9—H9 | 119.4 |
| C4—C3—C2 | 110.52 (16) | ||
| O2—N1—C2—C1 | −69.5 (2) | C3—C4—C5—C6 | −179.58 (18) |
| O1—N1—C2—C1 | 109.8 (2) | C4—C5—C6—C7 | −0.2 (3) |
| O2—N1—C2—C3 | 56.6 (2) | C5—C6—C7—C8 | 0.6 (3) |
| O1—N1—C2—C3 | −124.2 (2) | C5—C6—C7—N2 | 179.34 (18) |
| C1—C2—C3—O3 | 176.23 (17) | O5—N2—C7—C6 | −162.9 (2) |
| N1—C2—C3—O3 | 55.2 (2) | O4—N2—C7—C6 | 17.9 (3) |
| C1—C2—C3—C4 | −61.5 (2) | O5—N2—C7—C8 | 15.9 (3) |
| N1—C2—C3—C4 | 177.48 (16) | O4—N2—C7—C8 | −163.3 (2) |
| O3—C3—C4—C9 | −146.5 (2) | C6—C7—C8—C9 | −0.6 (3) |
| C2—C3—C4—C9 | 96.0 (2) | N2—C7—C8—C9 | −179.31 (17) |
| O3—C3—C4—C5 | 32.9 (3) | C7—C8—C9—C4 | 0.2 (3) |
| C2—C3—C4—C5 | −84.6 (2) | C5—C4—C9—C8 | 0.2 (3) |
| C9—C4—C5—C6 | −0.1 (3) | C3—C4—C9—C8 | 179.61 (18) |
| H··· | ||||
| O3—H3···O1i | 0.80 (3) | 2.24 (3) | 3.010 (2) | 162 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3⋯O1i | 0.80 (3) | 2.24 (3) | 3.010 (2) | 162 (3) |
Symmetry code: (i) .