Literature DB >> 22412732

(1R*,2S*)-2-Nitro-1-(4-nitro-phen-yl)propanol.

Xu Zhang1, Le Yang, Jun-Na Zhang, Wei He.   

Abstract

The title compound, C(9)H(10)N(2)O(5), presents a racemic mixture of two enanti-omeric diastereomers. In the crystal, mol-ecules assemble into zigzag chains parallel to the b axis [C(6) motif] due to the formation of elongated O-H⋯O(N) hydrogen bonds. Of inter-est is the fact that only the aliphatic nitro group is involved in hydrogen bonding and it adopts a gauche conformation with respect to the OH group.

Entities:  

Year:  2012        PMID: 22412732      PMCID: PMC3297929          DOI: 10.1107/S1600536812007775

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation and synthetic utilities of 2-nitro­ethanols, see: Palomo et al. (2005 ▶); Palomo (2007 ▶). For the structure of the closely related 1-(anthracen-9-yl)-2-nitro­ethanol, see: Niazimbetova et al. (1998 ▶). For spectroscopic data and chemical properties of the title compound, see: Blay et al. (2008 ▶). For hydrogen-bond graph-set notation, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C9H10N2O5 M = 226.19 Monoclinic, a = 7.4013 (15) Å b = 10.504 (2) Å c = 13.681 (3) Å β = 100.465 (4)° V = 1046.0 (4) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 296 K 0.40 × 0.28 × 0.14 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.954, T max = 0.984 5155 measured reflections 1868 independent reflections 1502 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.119 S = 1.05 1868 reflections 150 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXTL and OLEX2. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812007775/hg5165sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007775/hg5165Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007775/hg5165Isup3.cdx Supplementary material file. DOI: 10.1107/S1600536812007775/hg5165Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10N2O5F(000) = 472
Mr = 226.19Dx = 1.436 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1711 reflections
a = 7.4013 (15) Åθ = 2.5–24.3°
b = 10.504 (2) ŵ = 0.12 mm1
c = 13.681 (3) ÅT = 296 K
β = 100.465 (4)°Prism, colourless
V = 1046.0 (4) Å30.40 × 0.28 × 0.14 mm
Z = 4
Bruker APEXII diffractometer1868 independent reflections
Radiation source: fine-focus sealed tube1502 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.017
Detector resolution: 8.333 pixels mm-1θmax = 25.1°, θmin = 2.5°
φ and ω scansh = −8→5
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −12→12
Tmin = 0.954, Tmax = 0.984l = −14→16
5155 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0497P)2 + 0.3436P] where P = (Fo2 + 2Fc2)/3
1868 reflections(Δ/σ)max < 0.001
150 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.1671 (2)−0.04487 (15)0.18274 (12)0.0528 (4)
N20.3598 (3)0.67086 (16)0.05631 (16)0.0611 (5)
O10.2260 (2)−0.09283 (15)0.26305 (12)0.0718 (5)
O20.0497 (3)−0.09303 (15)0.12111 (11)0.0800 (6)
O30.0003 (3)0.17439 (15)0.21466 (14)0.0757 (6)
O40.4510 (3)0.72894 (16)0.12539 (14)0.0886 (6)
O50.3235 (3)0.71279 (16)−0.02787 (15)0.0872 (6)
C10.3609 (4)0.0580 (2)0.07942 (18)0.0722 (7)
H1A0.4478−0.00880.10050.108*
H1B0.42540.13450.06840.108*
H1C0.28160.03340.01880.108*
C20.2477 (3)0.08152 (17)0.15862 (16)0.0522 (5)
H20.32970.11210.21840.063*
C30.0905 (3)0.17561 (18)0.13254 (15)0.0512 (5)
H3A0.00600.14560.07340.061*
C40.1629 (3)0.30631 (17)0.11196 (14)0.0464 (5)
C50.2240 (3)0.3894 (2)0.18973 (15)0.0551 (5)
H50.22110.36440.25460.066*
C60.2890 (3)0.50863 (19)0.17205 (15)0.0555 (5)
H60.32950.56430.22430.067*
C70.2926 (3)0.54335 (17)0.07561 (15)0.0489 (5)
C80.2320 (3)0.46360 (18)−0.00374 (15)0.0522 (5)
H80.23470.4892−0.06850.063*
C90.1676 (3)0.34498 (18)0.01569 (15)0.0520 (5)
H90.12660.2898−0.03680.062*
H3−0.076 (4)0.230 (3)0.209 (2)0.103 (11)*
U11U22U33U12U13U23
N10.0716 (11)0.0402 (9)0.0517 (10)−0.0058 (8)0.0245 (9)−0.0030 (8)
N20.0612 (11)0.0396 (10)0.0843 (14)−0.0007 (8)0.0185 (10)0.0046 (10)
O10.0958 (12)0.0593 (10)0.0614 (10)−0.0052 (8)0.0171 (8)0.0150 (8)
O20.1145 (14)0.0619 (10)0.0603 (10)−0.0379 (10)0.0069 (9)−0.0026 (8)
O30.0893 (12)0.0504 (9)0.1043 (14)0.0075 (9)0.0623 (11)0.0127 (9)
O40.1091 (14)0.0488 (10)0.1031 (14)−0.0220 (9)0.0061 (11)−0.0073 (9)
O50.1046 (14)0.0596 (10)0.0953 (13)−0.0183 (9)0.0122 (11)0.0244 (9)
C10.0846 (16)0.0519 (13)0.0924 (17)0.0049 (11)0.0487 (14)0.0075 (12)
C20.0625 (12)0.0343 (10)0.0650 (13)−0.0074 (9)0.0251 (10)−0.0013 (9)
C30.0542 (11)0.0440 (11)0.0587 (12)−0.0049 (9)0.0191 (9)0.0039 (9)
C40.0475 (10)0.0385 (10)0.0560 (11)0.0008 (8)0.0168 (9)0.0023 (8)
C50.0657 (13)0.0511 (12)0.0531 (12)−0.0037 (10)0.0233 (10)0.0009 (9)
C60.0598 (12)0.0486 (11)0.0595 (13)−0.0036 (9)0.0151 (10)−0.0098 (10)
C70.0461 (10)0.0336 (10)0.0695 (13)0.0013 (8)0.0176 (9)0.0020 (9)
C80.0607 (12)0.0430 (11)0.0548 (12)0.0012 (9)0.0155 (9)0.0067 (9)
C90.0614 (12)0.0405 (11)0.0548 (12)−0.0028 (9)0.0126 (9)−0.0021 (9)
N1—O21.206 (2)C2—H20.9800
N1—O11.215 (2)C3—C41.519 (3)
N1—C21.516 (2)C3—H3A0.9800
N2—O51.217 (2)C4—C91.385 (3)
N2—O41.220 (2)C4—C51.387 (3)
N2—C71.469 (2)C5—C61.378 (3)
O3—C31.407 (2)C5—H50.9300
O3—H30.80 (3)C6—C71.374 (3)
C1—C21.505 (3)C6—H60.9300
C1—H1A0.9600C7—C81.380 (3)
C1—H1B0.9600C8—C91.377 (3)
C1—H1C0.9600C8—H80.9300
C2—C31.519 (3)C9—H90.9300
O2—N1—O1123.54 (17)O3—C3—H3A109.4
O2—N1—C2118.50 (17)C4—C3—H3A109.4
O1—N1—C2117.96 (17)C2—C3—H3A109.4
O5—N2—O4123.24 (19)C9—C4—C5118.93 (17)
O5—N2—C7118.44 (19)C9—C4—C3120.81 (17)
O4—N2—C7118.31 (19)C5—C4—C3120.26 (18)
C3—O3—H3110 (2)C6—C5—C4120.86 (19)
C2—C1—H1A109.5C6—C5—H5119.6
C2—C1—H1B109.5C4—C5—H5119.6
H1A—C1—H1B109.5C7—C6—C5118.55 (19)
C2—C1—H1C109.5C7—C6—H6120.7
H1A—C1—H1C109.5C5—C6—H6120.7
H1B—C1—H1C109.5C6—C7—C8122.29 (18)
C1—C2—N1107.80 (16)C6—C7—N2118.74 (18)
C1—C2—C3116.12 (18)C8—C7—N2118.96 (18)
N1—C2—C3107.79 (16)C9—C8—C7118.15 (19)
C1—C2—H2108.3C9—C8—H8120.9
N1—C2—H2108.3C7—C8—H8120.9
C3—C2—H2108.3C8—C9—C4121.22 (19)
O3—C3—C4113.00 (16)C8—C9—H9119.4
O3—C3—C2105.12 (16)C4—C9—H9119.4
C4—C3—C2110.52 (16)
O2—N1—C2—C1−69.5 (2)C3—C4—C5—C6−179.58 (18)
O1—N1—C2—C1109.8 (2)C4—C5—C6—C7−0.2 (3)
O2—N1—C2—C356.6 (2)C5—C6—C7—C80.6 (3)
O1—N1—C2—C3−124.2 (2)C5—C6—C7—N2179.34 (18)
C1—C2—C3—O3176.23 (17)O5—N2—C7—C6−162.9 (2)
N1—C2—C3—O355.2 (2)O4—N2—C7—C617.9 (3)
C1—C2—C3—C4−61.5 (2)O5—N2—C7—C815.9 (3)
N1—C2—C3—C4177.48 (16)O4—N2—C7—C8−163.3 (2)
O3—C3—C4—C9−146.5 (2)C6—C7—C8—C9−0.6 (3)
C2—C3—C4—C996.0 (2)N2—C7—C8—C9−179.31 (17)
O3—C3—C4—C532.9 (3)C7—C8—C9—C40.2 (3)
C2—C3—C4—C5−84.6 (2)C5—C4—C9—C80.2 (3)
C9—C4—C5—C6−0.1 (3)C3—C4—C9—C8179.61 (18)
D—H···AD—HH···AD···AD—H···A
O3—H3···O1i0.80 (3)2.24 (3)3.010 (2)162 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O1i0.80 (3)2.24 (3)3.010 (2)162 (3)

Symmetry code: (i) .

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2.  A short history of SHELX.

Authors:  George M Sheldrick
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3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

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