Literature DB >> 22412728

4-(4-Meth-oxy-phen-yl)naphtho-[2,3-b]thio-phene.

S Vasudhevan, G Puthilibai, R Joel Karunakaran.   

Abstract

In the title compound, C(19)H(14)OS, the naphtho-thio-phene moiety is almost planar except for the S atom of the five-membered ring, which is situated 0.047 (6) Å out of the C(4) plane (with an r.m.s. deviation of fitted atoms = 0.0009 Å). The dihedral angle between the naphtho-thio-phene plane and the attached meth-oxy-phenyl ring is 67.6 (2)°. In the crystal, a C-H⋯π inter-action is observed between a meth-oxy-phenyl C-H group and the outer benzene ring of the naphtho-thio-phene moiety. The five-membered ring of the naphtho-thio-phene moiety is disordered, with the S and opposite non-fused C atom approximately exchanging positions, with a site-occupancy factors of 0.808 (3) and 0.187 (3).

Entities:  

Year:  2012        PMID: 22412728      PMCID: PMC3297925          DOI: 10.1107/S1600536812005697

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related thio­phene structures, see: Labat & Halfpenny (2005 ▶); Thenmozhi et al. (2008 ▶). For related heterocyclic compounds, see: Jones et al. (1984 ▶); Palani et al. (2006 ▶). For biological activity of naphtho­thio­phenes, see: Zuse et al. (2007 ▶, 2006 ▶); Dallemagne et al. (2003 ▶); Misra & Amin (1990 ▶).

Experimental

Crystal data

C19H14OS M = 290.36 Monoclinic, a = 9.2961 (5) Å b = 15.9931 (7) Å c = 10.0896 (6) Å β = 104.580 (3)° V = 1451.75 (13) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.912, T max = 0.961 15008 measured reflections 2553 independent reflections 2223 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.150 S = 1.11 2553 reflections 196 parameters 4 restraints H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812005697/im2353sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005697/im2353Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812005697/im2353Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H14OSF(000) = 608
Mr = 290.36Dx = 1.328 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4322 reflections
a = 9.2961 (5) Åθ = 2.7–24.5°
b = 15.9931 (7) ŵ = 0.22 mm1
c = 10.0896 (6) ÅT = 293 K
β = 104.580 (3)°Block, pale yellow
V = 1451.75 (13) Å30.30 × 0.20 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2553 independent reflections
Radiation source: fine-focus sealed tube2223 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
ω and φ scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −11→11
Tmin = 0.912, Tmax = 0.961k = −19→19
15008 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0618P)2 + 1.0365P] where P = (Fo2 + 2Fc2)/3
2553 reflections(Δ/σ)max < 0.001
196 parametersΔρmax = 0.33 e Å3
4 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.5082 (5)−0.0475 (3)0.6960 (6)0.0644 (14)0.808 (3)
H10.4432−0.08940.70790.077*0.808 (3)
C20.6679 (6)−0.0682 (3)0.6871 (5)0.0614 (3)0.808 (3)
H20.7162−0.11960.69430.074*0.808 (3)
S10.45408 (12)0.05754 (8)0.68296 (10)0.0614 (3)0.808 (3)
C1'0.461 (3)−0.0280 (15)0.677 (3)0.0644 (14)0.187 (3)
H1'0.3766−0.05500.68980.077*0.187 (3)
C2'0.4755 (15)0.0563 (14)0.646 (3)0.0614 (3)0.187 (3)
H2'0.39390.09170.61990.074*0.187 (3)
S1'0.6213 (5)−0.0676 (3)0.6865 (5)0.0614 (3)0.187 (3)
C30.7222 (3)0.01533 (15)0.6642 (3)0.0490 (6)
C40.8635 (3)0.02564 (16)0.6515 (3)0.0515 (6)
H40.9258−0.02040.65640.062*
C50.9148 (3)0.10577 (17)0.6308 (2)0.0461 (6)
C61.0633 (3)0.1195 (2)0.6226 (3)0.0605 (8)
H61.12680.07410.62790.073*
C71.1118 (3)0.1930 (2)0.6081 (3)0.0631 (8)
H71.21060.19970.60590.076*
C81.0209 (3)0.2633 (2)0.5954 (3)0.0630 (8)
H81.06030.31530.58330.076*
C90.8833 (3)0.25843 (16)0.6001 (2)0.0452 (6)
H90.82520.30640.59100.054*
C100.8187 (3)0.17623 (15)0.6198 (2)0.0407 (5)
C110.6717 (3)0.16559 (15)0.6331 (2)0.0409 (5)
C120.6285 (3)0.08554 (15)0.6572 (2)0.0437 (6)
C130.5697 (2)0.23754 (15)0.6292 (2)0.0409 (5)
C140.5147 (3)0.28478 (16)0.5126 (3)0.0484 (6)
H140.54160.27120.43250.058*
C150.4202 (3)0.35206 (17)0.5124 (3)0.0490 (6)
H150.38420.38300.43280.059*
C160.3800 (3)0.37276 (15)0.6307 (2)0.0426 (6)
C170.4321 (3)0.32557 (16)0.7474 (3)0.0461 (6)
H170.40380.33870.82690.055*
C180.5258 (3)0.25921 (16)0.7463 (2)0.0457 (6)
H180.56060.22810.82590.055*
C190.2441 (4)0.4937 (2)0.5322 (3)0.0717 (9)
H19A0.33030.51600.50860.107*
H19B0.18780.53850.55760.107*
H19C0.18380.46450.45480.107*
O10.2893 (2)0.43755 (11)0.64381 (19)0.0548 (5)
U11U22U33U12U13U23
C10.057 (4)0.077 (3)0.056 (3)−0.031 (2)0.010 (3)0.005 (2)
C20.0525 (6)0.0696 (6)0.0625 (7)−0.0089 (4)0.0150 (4)0.0068 (5)
S10.0525 (6)0.0696 (6)0.0625 (7)−0.0089 (4)0.0150 (4)0.0068 (5)
C1'0.057 (4)0.077 (3)0.056 (3)−0.031 (2)0.010 (3)0.005 (2)
C2'0.0525 (6)0.0696 (6)0.0625 (7)−0.0089 (4)0.0150 (4)0.0068 (5)
S1'0.0525 (6)0.0696 (6)0.0625 (7)−0.0089 (4)0.0150 (4)0.0068 (5)
C30.0631 (16)0.0428 (14)0.0391 (13)0.0014 (12)0.0091 (11)0.0000 (10)
C40.0606 (16)0.0466 (14)0.0472 (14)0.0126 (12)0.0137 (12)0.0023 (12)
C50.0438 (13)0.0570 (15)0.0371 (13)0.0057 (11)0.0094 (10)−0.0017 (11)
C60.0478 (15)0.080 (2)0.0544 (17)0.0155 (15)0.0140 (12)0.0006 (15)
C70.0409 (14)0.084 (2)0.0650 (18)−0.0075 (14)0.0153 (13)−0.0171 (16)
C80.074 (2)0.0624 (18)0.0568 (17)−0.0210 (15)0.0235 (15)−0.0096 (14)
C90.0533 (15)0.0466 (14)0.0373 (12)0.0071 (11)0.0145 (11)−0.0074 (10)
C100.0422 (12)0.0470 (13)0.0331 (11)−0.0018 (10)0.0096 (9)−0.0044 (10)
C110.0443 (13)0.0436 (13)0.0341 (12)0.0007 (10)0.0085 (10)−0.0003 (10)
C120.0447 (13)0.0463 (14)0.0378 (12)−0.0039 (11)0.0062 (10)0.0018 (10)
C130.0390 (12)0.0432 (13)0.0406 (13)−0.0014 (10)0.0101 (10)0.0012 (10)
C140.0562 (15)0.0538 (15)0.0377 (13)0.0060 (12)0.0165 (11)0.0018 (11)
C150.0533 (14)0.0518 (15)0.0405 (13)0.0071 (12)0.0091 (11)0.0084 (11)
C160.0380 (12)0.0423 (13)0.0470 (14)−0.0008 (10)0.0100 (10)−0.0010 (11)
C170.0497 (14)0.0503 (14)0.0408 (13)0.0018 (11)0.0162 (11)−0.0008 (11)
C180.0496 (14)0.0489 (14)0.0383 (13)0.0030 (11)0.0105 (11)0.0062 (11)
C190.081 (2)0.0627 (19)0.073 (2)0.0271 (16)0.0225 (17)0.0152 (16)
O10.0584 (11)0.0520 (11)0.0562 (11)0.0144 (9)0.0185 (9)0.0041 (9)
C1—C21.545 (6)C8—C91.294 (4)
C1—S11.749 (5)C8—H80.9300
C1—H10.9300C9—C101.479 (3)
C2—C31.468 (5)C9—H90.9300
C2—H20.9300C10—C111.417 (3)
S1—C121.764 (3)C11—C121.381 (3)
C1'—C2'1.399 (10)C11—C131.486 (3)
C1'—S1'1.60 (3)C13—C141.384 (3)
C1'—H1'0.9300C13—C181.387 (3)
C2'—C121.474 (10)C14—C151.389 (4)
C2'—H2'0.9300C14—H140.9300
S1'—C31.673 (5)C15—C161.378 (4)
C3—C41.362 (4)C15—H150.9300
C3—C121.412 (4)C16—O11.363 (3)
C4—C51.401 (4)C16—C171.379 (3)
C4—H40.9300C17—C181.375 (3)
C5—C61.420 (4)C17—H170.9300
C5—C101.425 (3)C18—H180.9300
C6—C71.281 (4)C19—O11.419 (3)
C6—H60.9300C19—H19A0.9600
C7—C81.392 (4)C19—H19B0.9600
C7—H70.9300C19—H19C0.9600
C2—C1—S1117.7 (4)C11—C10—C5119.9 (2)
C2—C1—H1121.2C11—C10—C9123.6 (2)
S1—C1—H1121.2C5—C10—C9116.4 (2)
C3—C2—C1100.8 (4)C12—C11—C10117.3 (2)
C3—C2—H2129.6C12—C11—C13120.7 (2)
C1—C2—H2129.6C10—C11—C13122.0 (2)
C1—S1—C1289.8 (2)C11—C12—C3122.9 (2)
C2'—C1'—S1'105 (2)C11—C12—C2'126.8 (10)
C2'—C1'—H1'127.7C3—C12—C2'108.8 (10)
S1'—C1'—H1'127.7C11—C12—S1125.5 (2)
C1'—C2'—C12115.9 (19)C3—C12—S1111.67 (19)
C1'—C2'—H2'122.1C2'—C12—S113.0 (10)
C12—C2'—H2'122.1C14—C13—C18117.6 (2)
C1'—S1'—C3103.0 (9)C14—C13—C11122.8 (2)
C4—C3—C12119.8 (2)C18—C13—C11119.6 (2)
C4—C3—C2120.3 (3)C13—C14—C15121.5 (2)
C12—C3—C2120.0 (3)C13—C14—H14119.2
C4—C3—S1'134.1 (3)C15—C14—H14119.2
C12—C3—S1'106.1 (3)C16—C15—C14119.6 (2)
C2—C3—S1'13.9 (3)C16—C15—H15120.2
C3—C4—C5119.8 (2)C14—C15—H15120.2
C3—C4—H4120.1O1—C16—C15125.2 (2)
C5—C4—H4120.1O1—C16—C17115.2 (2)
C4—C5—C6121.5 (3)C15—C16—C17119.6 (2)
C4—C5—C10120.3 (2)C18—C17—C16120.2 (2)
C6—C5—C10118.2 (3)C18—C17—H17119.9
C7—C6—C5121.6 (3)C16—C17—H17119.9
C7—C6—H6119.2C17—C18—C13121.5 (2)
C5—C6—H6119.2C17—C18—H18119.3
C6—C7—C8121.9 (3)C13—C18—H18119.3
C6—C7—H7119.1O1—C19—H19A109.5
C8—C7—H7119.1O1—C19—H19B109.5
C9—C8—C7122.1 (3)H19A—C19—H19B109.5
C9—C8—H8119.0O1—C19—H19C109.5
C7—C8—H8119.0H19A—C19—H19C109.5
C8—C9—C10119.8 (2)H19B—C19—H19C109.5
C8—C9—H9120.1C16—O1—C19118.1 (2)
C10—C9—H9120.1
S1—C1—C2—C3−1.9 (5)C10—C11—C12—S1177.76 (18)
C2—C1—S1—C122.4 (4)C13—C11—C12—S11.0 (3)
S1'—C1'—C2'—C12−11 (3)C4—C3—C12—C112.2 (4)
C2'—C1'—S1'—C34 (2)C2—C3—C12—C11−178.7 (3)
C1—C2—C3—C4179.4 (3)S1'—C3—C12—C11−177.1 (3)
C1—C2—C3—C120.2 (4)C4—C3—C12—C2'168.8 (11)
C1—C2—C3—S1'−5.9 (12)C2—C3—C12—C2'−12.0 (11)
C1'—S1'—C3—C4−174.8 (13)S1'—C3—C12—C2'−10.5 (11)
C1'—S1'—C3—C124.3 (13)C4—C3—C12—S1−177.7 (2)
C1'—S1'—C3—C2179 (2)C2—C3—C12—S11.4 (3)
C12—C3—C4—C5−0.3 (4)S1'—C3—C12—S13.0 (3)
C2—C3—C4—C5−179.4 (3)C1'—C2'—C12—C11−179.4 (19)
S1'—C3—C4—C5178.8 (3)C1'—C2'—C12—C315 (3)
C3—C4—C5—C6177.4 (2)C1'—C2'—C12—S1−90 (5)
C3—C4—C5—C10−1.5 (4)C1—S1—C12—C11178.0 (3)
C4—C5—C6—C7−177.8 (3)C1—S1—C12—C3−2.1 (3)
C10—C5—C6—C71.2 (4)C1—S1—C12—C2'78 (4)
C5—C6—C7—C8−1.9 (5)C12—C11—C13—C14−116.0 (3)
C6—C7—C8—C91.2 (5)C10—C11—C13—C1467.3 (3)
C7—C8—C9—C100.2 (4)C12—C11—C13—C1863.7 (3)
C4—C5—C10—C111.5 (3)C10—C11—C13—C18−112.9 (3)
C6—C5—C10—C11−177.4 (2)C18—C13—C14—C150.7 (4)
C4—C5—C10—C9179.2 (2)C11—C13—C14—C15−179.6 (2)
C6—C5—C10—C90.2 (3)C13—C14—C15—C160.1 (4)
C8—C9—C10—C11176.7 (2)C14—C15—C16—O1179.5 (2)
C8—C9—C10—C5−0.9 (3)C14—C15—C16—C17−1.1 (4)
C5—C10—C11—C120.3 (3)O1—C16—C17—C18−179.3 (2)
C9—C10—C11—C12−177.2 (2)C15—C16—C17—C181.2 (4)
C5—C10—C11—C13177.0 (2)C16—C17—C18—C13−0.4 (4)
C9—C10—C11—C13−0.5 (3)C14—C13—C18—C17−0.5 (4)
C10—C11—C12—C3−2.1 (3)C11—C13—C18—C17179.7 (2)
C13—C11—C12—C3−178.9 (2)C15—C16—O1—C19−6.8 (4)
C10—C11—C12—C2'−166.3 (12)C17—C16—O1—C19173.7 (3)
C13—C11—C12—C2'17.0 (13)
D—H···AD—HH···AD···AD—H···A
C17—H17···Cgi0.932.823.621 (3)145
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the of C5–C10 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C17—H17⋯Cgi0.932.823.621 (3)145

Symmetry code: (i) .

  7 in total

1.  Synthesis and biological evaluation of five-membered heterocycles fused to cyclopenta[c]thiophene as new antitumor agents.

Authors:  Patrick Dallemagne; Lan Pham Khanh; Abdellah Alsaïdi; Isabelle Varlet; Valérie Collot; Magalie Paillet; Ronan Bureau; Sylvain Rault
Journal:  Bioorg Med Chem       Date:  2003-04-03       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  9-Benzylidene-naphtho[2,3-b]thiophen-4-ones as novel antimicrotubule agents-synthesis, antiproliferative activity, and inhibition of tubulin polymerization.

Authors:  Anne Zuse; Peter Schmidt; Silke Baasner; Konrad J Böhm; Klaus Müller; Matthias Gerlach; Eckhard G Günther; Eberhard Unger; Helge Prinz
Journal:  J Med Chem       Date:  2006-12-28       Impact factor: 7.446

4.  Synthesis and mutagenicity of trans-dihydrodiol metabolites of benzo[b]naphtho[2,1-d]thiophene.

Authors:  B Misra; S Amin
Journal:  Chem Res Toxicol       Date:  1990 Mar-Apr       Impact factor: 3.739

5.  Antiestrogens. 2. Structure-activity studies in a series of 3-aroyl-2-arylbenzo[b]thiophene derivatives leading to [6-hydroxy-2-(4-hydroxyphenyl)benzo[b]thien-3-yl] [4-[2-(1-piperidinyl)ethoxy]-phenyl]methanone hydrochloride (LY156758), a remarkably effective estrogen antagonist with only minimal intrinsic estrogenicity.

Authors:  C D Jones; M G Jevnikar; A J Pike; M K Peters; L J Black; A R Thompson; J F Falcone; J A Clemens
Journal:  J Med Chem       Date:  1984-08       Impact factor: 7.446

6.  Naphthalene-2,3-diylbis[(2-thien-yl)methanone].

Authors:  S Thenmozhi; A Subbiahpandi; S Ranjith; J Arul Clement; A K Mohanakrishnan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-26

7.  Sulfonate derivatives of naphtho[2,3-b]thiophen-4(9H)-one and 9(10H)-anthracenone as highly active antimicrotubule agents. Synthesis, antiproliferative activity, and inhibition of tubulin polymerization.

Authors:  Anne Zuse; Peter Schmidt; Silke Baasner; Konrad J Böhm; Klaus Müller; Matthias Gerlach; Eckhard G Günther; Eberhard Unger; Helge Prinz
Journal:  J Med Chem       Date:  2007-10-31       Impact factor: 7.446

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.