Literature DB >> 22412725

2-Methylxanthen-9-one.

N Vinutha, Sumati Anthal, V Lakshmi Ranganatha, Shaukath Ara Khanum, D Revannasiddaiah, Rajni Kant, Vivek K Gupta.   

Abstract

In the title compound, C(14)H(10)O(2), the tricycle is not planar, being bent with a dihedral angle of 4.7 (1)° between the two benzene rings. In the crystal, π-π inter-actions between the six-membered rings of neighbouring mol-ecules [centroid-centroid distances = 3.580 (3) and 3.605 (3) Å] form stacks propagating along [101].

Entities:  

Year:  2012        PMID: 22412725      PMCID: PMC3297922          DOI: 10.1107/S1600536812007702

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and applications of xanthones, see: Jiang et al. (2004 ▶); Sampath & Vijayaraghavan (2007 ▶); Nakatani et al. (2002 ▶); Pinto et al. (2005 ▶). For related structures, see: Ee et al. (2010 ▶); Boonnak et al. (2010 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C14H10O2 M = 210.22 Triclinic, a = 8.2678 (7) Å b = 8.5268 (6) Å c = 8.5965 (7) Å α = 92.650 (6)° β = 116.592 (8)° γ = 104.045 (7)° V = 517.28 (7) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.890, T max = 1.000 10601 measured reflections 2028 independent reflections 1262 reflections with I > 2σ(I) R int = 0.033 Standard reflections: ?

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.152 S = 1.04 2028 reflections 146 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812007702/cv5249sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007702/cv5249Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007702/cv5249Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H10O2Z = 2
Mr = 210.22F(000) = 220
Triclinic, P1Dx = 1.350 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.2678 (7) ÅCell parameters from 3639 reflections
b = 8.5268 (6) Åθ = 3.6–29.1°
c = 8.5965 (7) ŵ = 0.09 mm1
α = 92.650 (6)°T = 293 K
β = 116.592 (8)°Block, white
γ = 104.045 (7)°0.30 × 0.20 × 0.20 mm
V = 517.28 (7) Å3
Oxford Diffraction Xcalibur Sapphire3 diffractometer2028 independent reflections
Radiation source: fine-focus sealed tube1262 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
ω scansθmax = 26.0°, θmin = 3.6°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)h = −10→10
Tmin = 0.890, Tmax = 1.000k = −10→10
10601 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.152H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0652P)2 + 0.0822P] where P = (Fo2 + 2Fc2)/3
2028 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.13 e Å3
0 restraintsΔρmin = −0.15 e Å3
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7846 (3)0.1172 (2)0.0063 (2)0.0552 (5)
H10.82990.0663−0.05700.066*
C20.7434 (3)0.2613 (3)−0.0345 (3)0.0608 (6)
C30.6748 (3)0.3344 (3)0.0625 (3)0.0672 (6)
H30.64480.43150.03620.081*
C40.6505 (3)0.2675 (3)0.1948 (3)0.0658 (6)
H40.60460.31870.25740.079*
C50.7034 (3)−0.1210 (3)0.5685 (3)0.0623 (6)
H50.6586−0.06090.62490.075*
C60.7523 (3)−0.2566 (3)0.6273 (3)0.0705 (7)
H60.7410−0.28860.72480.085*
C70.8186 (3)−0.3476 (3)0.5441 (3)0.0707 (7)
H70.8514−0.44010.58550.085*
C80.8355 (3)−0.3005 (3)0.4002 (3)0.0601 (6)
H80.8802−0.36160.34450.072*
C90.8034 (3)−0.1098 (2)0.1823 (2)0.0487 (5)
O90.8493 (2)−0.19003 (18)0.09566 (19)0.0720 (5)
O100.67103 (19)0.06452 (17)0.37199 (17)0.0590 (4)
C110.6948 (3)0.1230 (2)0.2347 (2)0.0499 (5)
C120.7212 (3)−0.0736 (2)0.4230 (2)0.0494 (5)
C130.7864 (3)−0.1617 (2)0.3361 (2)0.0468 (5)
C140.7604 (3)0.0446 (2)0.1403 (2)0.0466 (5)
C150.7710 (4)0.3410 (3)−0.1775 (3)0.0837 (8)
H1530.84060.4550−0.13210.126*
H1520.64980.3312−0.27600.126*
H1510.84010.2873−0.21530.126*
U11U22U33U12U13U23
C10.0528 (13)0.0580 (13)0.0503 (12)0.0096 (10)0.0242 (10)0.0068 (9)
C20.0544 (13)0.0574 (13)0.0561 (12)0.0066 (10)0.0185 (10)0.0142 (10)
C30.0636 (15)0.0503 (12)0.0768 (15)0.0177 (11)0.0232 (12)0.0157 (11)
C40.0650 (15)0.0579 (14)0.0772 (15)0.0234 (11)0.0338 (12)0.0065 (11)
C50.0607 (14)0.0784 (15)0.0507 (12)0.0146 (12)0.0324 (11)0.0058 (11)
C60.0706 (16)0.0855 (17)0.0549 (13)0.0158 (13)0.0320 (12)0.0220 (12)
C70.0798 (17)0.0697 (15)0.0640 (13)0.0251 (13)0.0324 (12)0.0262 (11)
C80.0670 (14)0.0558 (13)0.0586 (12)0.0193 (11)0.0302 (11)0.0096 (10)
C90.0470 (11)0.0518 (11)0.0494 (11)0.0120 (9)0.0263 (9)0.0043 (9)
O90.1003 (12)0.0713 (10)0.0769 (10)0.0395 (9)0.0617 (9)0.0172 (8)
O100.0687 (10)0.0625 (9)0.0603 (9)0.0252 (7)0.0400 (7)0.0096 (7)
C110.0468 (12)0.0492 (11)0.0510 (11)0.0117 (9)0.0225 (9)0.0055 (9)
C120.0447 (11)0.0525 (12)0.0490 (11)0.0103 (9)0.0227 (9)0.0054 (9)
C130.0432 (11)0.0496 (11)0.0441 (10)0.0088 (9)0.0205 (9)0.0047 (8)
C140.0436 (11)0.0463 (11)0.0460 (10)0.0076 (9)0.0210 (9)0.0045 (8)
C150.0831 (18)0.0799 (17)0.0763 (16)0.0159 (14)0.0302 (14)0.0321 (13)
C1—C21.373 (3)C7—C81.373 (3)
C1—C141.400 (2)C7—H70.9300
C1—H10.9300C8—C131.402 (3)
C2—C31.396 (3)C8—H80.9300
C2—C151.509 (3)C9—O91.225 (2)
C3—C41.367 (3)C9—C141.464 (3)
C3—H30.9300C9—C131.467 (2)
C4—C111.385 (3)O10—C121.368 (2)
C4—H40.9300O10—C111.377 (2)
C5—C61.362 (3)C11—C141.386 (3)
C5—C121.390 (3)C12—C131.385 (3)
C5—H50.9300C15—H1530.9600
C6—C71.386 (3)C15—H1520.9600
C6—H60.9300C15—H1510.9600
C2—C1—C14122.1 (2)C13—C8—H8119.6
C2—C1—H1119.0O9—C9—C14122.70 (17)
C14—C1—H1119.0O9—C9—C13122.40 (18)
C1—C2—C3117.6 (2)C14—C9—C13114.91 (16)
C1—C2—C15122.2 (2)C12—O10—C11118.91 (15)
C3—C2—C15120.2 (2)O10—C11—C4116.28 (18)
C4—C3—C2122.0 (2)O10—C11—C14122.97 (17)
C4—C3—H3119.0C4—C11—C14120.75 (19)
C2—C3—H3119.0O10—C12—C13122.48 (17)
C3—C4—C11119.3 (2)O10—C12—C5116.03 (18)
C3—C4—H4120.3C13—C12—C5121.50 (19)
C11—C4—H4120.3C12—C13—C8117.83 (18)
C6—C5—C12119.2 (2)C12—C13—C9120.58 (17)
C6—C5—H5120.4C8—C13—C9121.59 (17)
C12—C5—H5120.4C11—C14—C1118.27 (18)
C5—C6—C7121.0 (2)C11—C14—C9119.92 (17)
C5—C6—H6119.5C1—C14—C9121.80 (17)
C7—C6—H6119.5C2—C15—H153109.5
C8—C7—C6119.6 (2)C2—C15—H152109.5
C8—C7—H7120.2H153—C15—H152109.5
C6—C7—H7120.2C2—C15—H151109.5
C7—C8—C13120.9 (2)H153—C15—H151109.5
C7—C8—H8119.6H152—C15—H151109.5
C14—C1—C2—C3−0.3 (3)O10—C12—C13—C9−0.4 (3)
C14—C1—C2—C15179.37 (18)C5—C12—C13—C9179.75 (17)
C1—C2—C3—C40.7 (3)C7—C8—C13—C120.3 (3)
C15—C2—C3—C4−179.00 (19)C7—C8—C13—C9−179.92 (18)
C2—C3—C4—C110.0 (3)O9—C9—C13—C12−175.44 (19)
C12—C5—C6—C7−0.2 (3)C14—C9—C13—C124.3 (3)
C5—C6—C7—C80.1 (4)O9—C9—C13—C84.8 (3)
C6—C7—C8—C13−0.1 (3)C14—C9—C13—C8−175.48 (17)
C12—O10—C11—C4−176.87 (17)O10—C11—C14—C1−178.18 (16)
C12—O10—C11—C142.7 (3)C4—C11—C14—C11.3 (3)
C3—C4—C11—O10178.55 (17)O10—C11—C14—C91.6 (3)
C3—C4—C11—C14−1.0 (3)C4—C11—C14—C9−178.92 (17)
C11—O10—C12—C13−3.3 (3)C2—C1—C14—C11−0.7 (3)
C11—O10—C12—C5176.62 (16)C2—C1—C14—C9179.57 (18)
C6—C5—C12—O10−179.48 (18)O9—C9—C14—C11174.89 (19)
C6—C5—C12—C130.4 (3)C13—C9—C14—C11−4.9 (3)
O10—C12—C13—C8179.45 (17)O9—C9—C14—C1−5.4 (3)
C5—C12—C13—C8−0.4 (3)C13—C9—C14—C1174.86 (16)
  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Xanthone derivatives: new insights in biological activities.

Authors:  M M M Pinto; M E Sousa; M S J Nascimento
Journal:  Curr Med Chem       Date:  2005       Impact factor: 4.530

3.  Cardioprotective effect of alpha-mangostin, a xanthone derivative from mangosteen on tissue defense system against isoproterenol-induced myocardial infarction in rats.

Authors:  Pandima Devi Sampath; Kannan Vijayaraghavan
Journal:  J Biochem Mol Toxicol       Date:  2007       Impact factor: 3.642

4.  Vieillardiixanthone B.

Authors:  Nawong Boonnak; Suchada Chantrapromma; Hoong-Kun Fun; Chatchanok Karalai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-13

Review 5.  Pharmacological effects of xanthones as cardiovascular protective agents.

Authors:  De-Jian Jiang; Zhong Dai; Yuan-Jian Li
Journal:  Cardiovasc Drug Rev       Date:  2004

6.  Inhibition of cyclooxygenase and prostaglandin E2 synthesis by gamma-mangostin, a xanthone derivative in mangosteen, in C6 rat glioma cells.

Authors:  Keigo Nakatani; Norimichi Nakahata; Tsutomu Arakawa; Hideyuki Yasuda; Yasushi Ohizumi
Journal:  Biochem Pharmacol       Date:  2002-01-01       Impact factor: 6.100

7.  1,3,6-Trihy-droxy-7-meth-oxy-2,8-bis-(3-methyl-but-2-en-yl)-9H-xanthen-9-one.

Authors:  Gwendoline Cheng Lian Ee; Wei Chung Sim; Huey Chong Kwong; Mohamed Ibrahim Mohamed Tahir; Sidik Silong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-30

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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