Literature DB >> 22412721

3-{[(4Z)-1,2-Dimethyl-5-oxoimidazol-4-yl-idene]meth-yl}-4-hy-droxy-benzonitrile.

Hsing-Yang Tsai1, Ming-Jen Chang, Tzu-Chien Fang, Ming-Hui Luo, Kew-Yu Chen.   

Abstract

In the title compound, C(13)H(11)N(3)O(2), an intra-molecular O-H⋯N hydrogen bond generates an S(7) ring. The dihedral angle between the mean plane of the benzene ring and the imidazolidinone ring is 3.05 (2)°. In the crystal, inversion-related mol-ecules are linked by dual C-H⋯O(carbon-yl) hydrogen bonds to form a dimer with an R(2) (2)(14) graph-set motif. A C-H⋯O(hy-droxy) inter-action links pairs of mol-ecules into another type of cyclic dimer with an R(2) (2)(18) motif. The mol-ecules are further linked by C-H⋯N inter-actions to form layers parallel to (001). Offset π-π stacking [3.3877 (8) Å] is observed in the crystal structure, with an inter-planar spacing between the planes of neighboring benzene rings of 3.444 (1) Å.

Entities:  

Year:  2012        PMID: 22412721      PMCID: PMC3297918          DOI: 10.1107/S1600536812007532

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the spectroscopy and preparation of the title compound, see: Chuang et al. (2011 ▶). For the applications of proton-transfer dyes, see: Chen & Pang (2010 ▶); Gryko et al. (2010 ▶); Han et al. (2010 ▶); Helal et al. (2010 ▶); Ikeda et al. (2010 ▶); Ito et al. (2011 ▶); Lim et al. (2011 ▶); Lins et al. (2010 ▶); Maupin et al. (2011 ▶); Santos et al. (2011 ▶); Tang et al. (2011 ▶). For a related structure, see: Chen et al. (2007 ▶). For graph-set notation of hydrogen bonds, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H11N3O2 M = 241.25 Monoclinic, a = 24.9655 (10) Å b = 3.8349 (1) Å c = 26.7584 (10) Å β = 115.488 (5)° V = 2312.52 (17) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 150 K 0.24 × 0.2 × 0.15 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.811, T max = 0.999 15085 measured reflections 2048 independent reflections 1364 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.112 S = 0.94 2048 reflections 166 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812007532/zl2452sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007532/zl2452Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007532/zl2452Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11N3O2F(000) = 1008
Mr = 241.25Dx = 1.386 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3648 reflections
a = 24.9655 (10) Åθ = 3.1–26.9°
b = 3.8349 (1) ŵ = 0.10 mm1
c = 26.7584 (10) ÅT = 150 K
β = 115.488 (5)°Prism, colourless
V = 2312.52 (17) Å30.24 × 0.2 × 0.15 mm
Z = 8
Bruker SMART CCD diffractometer2048 independent reflections
Radiation source: fine-focus sealed tube1364 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.067
φ and ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −28→28
Tmin = 0.811, Tmax = 0.999k = −4→4
15085 measured reflectionsl = −31→31
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H-atom parameters constrained
S = 0.94w = 1/[σ2(Fo2) + (0.0695P)2] where P = (Fo2 + 2Fc2)/3
2048 reflections(Δ/σ)max = 0.001
166 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.41612 (5)0.5235 (4)0.49910 (5)0.0339 (4)
O20.56473 (6)0.0638 (3)0.71292 (5)0.0339 (4)
H20.52990.08550.69070.051*
N10.38975 (6)0.5881 (4)0.57176 (6)0.0246 (4)
N20.46849 (6)0.3562 (4)0.64190 (6)0.0251 (4)
N30.74916 (8)−0.3544 (5)0.59904 (8)0.0484 (6)
C10.41673 (8)0.5046 (5)0.62728 (8)0.0245 (5)
C20.42684 (8)0.4890 (5)0.54770 (8)0.0235 (5)
C30.47832 (7)0.3369 (5)0.59435 (7)0.0221 (4)
C40.33058 (8)0.7365 (5)0.54035 (8)0.0331 (5)
H4A0.32440.92410.56100.050*
H4B0.30120.55940.53390.050*
H4C0.32740.82330.50550.050*
C50.38931 (9)0.5833 (5)0.66510 (8)0.0347 (5)
H5A0.34990.48790.65030.052*
H5B0.38740.83140.66890.052*
H5C0.41270.48180.70070.052*
C60.52658 (8)0.2123 (5)0.58951 (7)0.0231 (5)
H60.52420.22990.55390.028*
C70.58150 (7)0.0561 (4)0.62927 (7)0.0212 (5)
C80.59742 (8)−0.0138 (5)0.68578 (8)0.0247 (5)
C90.65172 (8)−0.1766 (5)0.71763 (8)0.0291 (5)
H90.6619−0.22640.75460.035*
C100.69024 (8)−0.2644 (5)0.69540 (8)0.0277 (5)
H100.7262−0.37150.71730.033*
C110.67552 (8)−0.1933 (5)0.64034 (8)0.0251 (5)
C120.62173 (8)−0.0365 (5)0.60796 (8)0.0241 (5)
H120.61210.00870.57090.029*
C130.71618 (8)−0.2836 (5)0.61677 (8)0.0323 (5)
U11U22U33U12U13U23
O10.0263 (8)0.0464 (9)0.0299 (9)0.0084 (6)0.0128 (6)0.0040 (7)
O20.0225 (7)0.0537 (10)0.0266 (8)0.0042 (6)0.0116 (6)0.0030 (7)
N10.0157 (8)0.0296 (10)0.0305 (9)0.0027 (7)0.0119 (7)−0.0007 (8)
N20.0192 (9)0.0305 (10)0.0287 (9)−0.0006 (7)0.0132 (7)−0.0024 (8)
N30.0312 (11)0.0575 (14)0.0624 (14)0.0070 (9)0.0257 (10)−0.0083 (11)
C10.0210 (11)0.0246 (11)0.0303 (11)−0.0034 (9)0.0133 (9)−0.0035 (9)
C20.0198 (10)0.0266 (11)0.0261 (12)−0.0005 (8)0.0118 (9)−0.0009 (9)
C30.0189 (10)0.0239 (11)0.0259 (10)−0.0016 (8)0.0118 (8)−0.0012 (8)
C40.0192 (10)0.0351 (12)0.0439 (13)0.0077 (9)0.0124 (10)0.0028 (10)
C50.0338 (12)0.0395 (13)0.0385 (13)0.0029 (10)0.0230 (11)−0.0006 (10)
C60.0205 (10)0.0249 (11)0.0249 (10)−0.0020 (8)0.0108 (8)−0.0015 (9)
C70.0172 (10)0.0187 (10)0.0279 (11)−0.0028 (8)0.0099 (9)−0.0025 (8)
C80.0185 (10)0.0256 (11)0.0314 (12)−0.0036 (8)0.0119 (9)−0.0027 (9)
C90.0248 (11)0.0308 (12)0.0273 (11)−0.0016 (9)0.0070 (9)0.0026 (9)
C100.0181 (10)0.0244 (11)0.0363 (12)0.0012 (8)0.0075 (9)0.0005 (9)
C110.0180 (10)0.0211 (10)0.0368 (12)0.0005 (8)0.0124 (9)−0.0039 (9)
C120.0206 (10)0.0245 (11)0.0281 (11)0.0003 (8)0.0115 (9)−0.0008 (9)
C130.0209 (11)0.0307 (12)0.0425 (13)0.0032 (9)0.0109 (10)−0.0009 (10)
O1—C21.217 (2)C5—H5A0.9600
O2—C81.339 (2)C5—H5B0.9600
O2—H20.8200C5—H5C0.9600
N1—C11.379 (2)C6—C71.454 (2)
N1—C21.389 (2)C6—H60.9300
N1—C41.464 (2)C7—C121.397 (2)
N2—C11.308 (2)C7—C81.414 (2)
N2—C31.398 (2)C8—C91.400 (3)
N3—C131.146 (2)C9—C101.373 (2)
C1—C51.476 (2)C9—H90.9300
C2—C31.473 (2)C10—C111.383 (3)
C3—C61.353 (2)C10—H100.9300
C4—H4A0.9600C11—C121.384 (3)
C4—H4B0.9600C11—C131.449 (3)
C4—H4C0.9600C12—H120.9300
C8—O2—H2109.5H5A—C5—H5C109.5
C1—N1—C2108.77 (15)H5B—C5—H5C109.5
C1—N1—C4127.81 (15)C3—C6—C7132.33 (17)
C2—N1—C4123.33 (15)C3—C6—H6113.8
C1—N2—C3106.78 (15)C7—C6—H6113.8
N2—C1—N1112.63 (16)C12—C7—C8117.87 (17)
N2—C1—C5125.00 (17)C12—C7—C6115.02 (16)
N1—C1—C5122.36 (16)C8—C7—C6127.10 (16)
O1—C2—N1125.56 (17)O2—C8—C9115.19 (17)
O1—C2—C3131.25 (17)O2—C8—C7125.55 (17)
N1—C2—C3103.19 (15)C9—C8—C7119.26 (17)
C6—C3—N2128.19 (17)C10—C9—C8121.40 (18)
C6—C3—C2123.15 (17)C10—C9—H9119.3
N2—C3—C2108.63 (14)C8—C9—H9119.3
N1—C4—H4A109.5C9—C10—C11119.90 (17)
N1—C4—H4B109.5C9—C10—H10120.1
H4A—C4—H4B109.5C11—C10—H10120.1
N1—C4—H4C109.5C10—C11—C12119.61 (17)
H4A—C4—H4C109.5C10—C11—C13120.11 (17)
H4B—C4—H4C109.5C12—C11—C13120.28 (18)
C1—C5—H5A109.5C11—C12—C7121.95 (18)
C1—C5—H5B109.5C11—C12—H12119.0
H5A—C5—H5B109.5C7—C12—H12119.0
C1—C5—H5C109.5N3—C13—C11178.8 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2···N20.821.852.591 (2)150
C12—H12···O1i0.932.473.262 (2)143
C5—H5C···O2ii0.962.673.566 (3)156
C4—H4A···N3iii0.962.633.436 (3)142
C5—H5A···N3iv0.962.643.586 (3)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N20.821.852.591 (2)150
C12—H12⋯O1i0.932.473.262 (2)143
C5—H5C⋯O2ii0.962.673.566 (3)156
C4—H4A⋯N3iii0.962.633.436 (3)142
C5—H5A⋯N3iv0.962.643.586 (3)169

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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