Literature DB >> 22412713

2,2'-Dimethyl-1,1'-[2,2-bis-(bromo-methyl)propane-1,3-di-yl]dibenzimidazole hemihydrate.

Xing Wang1, Chun-Bo Liu, Shen-Tang Wang, Yong-Sheng Yan, Ling Liu.   

Abstract

The title compound, C(21)H(22)Br(2)N(4)·0.5H(2)O, contains two benzimidazole groups which may provide two potential coordination nodes for the construction of metal-organic frameworks. The mean planes of the two imidazole groups are almost perpendicular, with a dihedral angle of 83.05 (2)°, and adjacent mol-ecules are linked into a one-dimensional chain by π-π stacking inter-actions between imidazole groups of different mol-ecules [centroid-to-centroid distances of 3.834 (2) and 3.522 (2) Å].

Entities:  

Year:  2012        PMID: 22412713      PMCID: PMC3297910          DOI: 10.1107/S1600536812007751

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For preparation of the N-donor compound, see: Bai et al. (2010 ▶). For a related structure, see: Wei et al. (2011 ▶). For constructions and applications of metal–organic frameworks, see: Kuppler et al. (2009 ▶); Wang et al. (2011 ▶).

Experimental

Crystal data

C21H22Br2N4·0.5H2O M = 499.26 Monoclinic, a = 12.647 (3) Å b = 8.1065 (16) Å c = 20.580 (4) Å β = 107.42 (3)° V = 2013.1 (7) Å3 Z = 4 Mo Kα radiation μ = 4.04 mm−1 T = 153 K 0.15 × 0.11 × 0.10 mm

Data collection

Rigaku Saturn 724+ CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2007 ▶) T min = 0.582, T max = 0.688 9078 measured reflections 3662 independent reflections 2786 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.074 wR(F 2) = 0.159 S = 1.13 3662 reflections 253 parameters H-atom parameters constrained Δρmax = 1.00 e Å−3 Δρmin = −0.71 e Å−3 Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CrystalClear and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812007751/bg2435sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007751/bg2435Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007751/bg2435Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H22Br2N4·0.5H2OF(000) = 1004
Mr = 499.26Dx = 1.647 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6583 reflections
a = 12.647 (3) Åθ = 2.5–29.1°
b = 8.1065 (16) ŵ = 4.04 mm1
c = 20.580 (4) ÅT = 153 K
β = 107.42 (3)°Prism, colourless
V = 2013.1 (7) Å30.15 × 0.11 × 0.10 mm
Z = 4
Rigaku Saturn 724+ CCD diffractometer3662 independent reflections
Radiation source: fine-focus sealed tube2786 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.059
Detector resolution: 28.5714 pixels mm-1θmax = 25.4°, θmin = 3.0°
ω scansh = −14→15
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007)k = −9→9
Tmin = 0.582, Tmax = 0.688l = −20→24
9078 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.074Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.159H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.053P)2 + 5.0634P] where P = (Fo2 + 2Fc2)/3
3662 reflections(Δ/σ)max = 0.001
253 parametersΔρmax = 1.00 e Å3
0 restraintsΔρmin = −0.71 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.6424 (6)0.2016 (8)0.9301 (3)0.0256 (16)
H1A0.70090.18630.97260.031*
H1B0.60360.30250.93420.031*
C20.4530 (6)0.0612 (8)0.8838 (3)0.0242 (15)
C30.3807 (6)0.1770 (9)0.8446 (3)0.0297 (17)
H30.40430.28290.83860.036*
C40.2721 (6)0.1286 (10)0.8149 (4)0.0364 (18)
H40.22160.20400.78880.044*
C50.2365 (7)−0.0308 (10)0.8233 (4)0.042 (2)
H50.1634−0.06000.80140.051*
C60.3062 (7)−0.1452 (10)0.8627 (4)0.039 (2)
H60.2813−0.25020.86900.047*
C70.4159 (6)−0.0989 (9)0.8933 (3)0.0308 (17)
C80.5876 (6)−0.0897 (9)0.9525 (4)0.0308 (17)
C90.6978 (6)−0.1342 (10)0.9993 (4)0.0386 (19)
H9A0.7479−0.04321.00280.058*
H9B0.7259−0.22890.98180.058*
H9C0.6911−0.15921.04340.058*
C100.8018 (5)0.3379 (8)0.8972 (3)0.0286 (16)
H10A0.83640.34350.86110.034*
H10B0.77690.44830.90340.034*
C111.0146 (6)0.1356 (10)0.9069 (4)0.0401 (19)
H11A0.95450.15030.86580.060*
H11B1.02830.02000.91530.060*
H11C1.08000.18770.90200.060*
C120.9851 (6)0.2113 (9)0.9649 (4)0.0354 (18)
C130.9953 (6)0.3007 (9)1.0651 (4)0.0327 (17)
C141.0284 (6)0.3408 (10)1.1335 (4)0.0362 (18)
H141.09590.30421.16230.043*
C150.9585 (7)0.4364 (10)1.1578 (4)0.044 (2)
H150.97910.46511.20370.052*
C160.8556 (7)0.4915 (9)1.1138 (4)0.0390 (19)
H160.80990.55721.13100.047*
C170.8226 (6)0.4492 (8)1.0462 (4)0.0300 (17)
H170.75510.48531.01720.036*
C200.8938 (6)0.3495 (8)1.0220 (3)0.0258 (16)
C210.7252 (6)0.0544 (9)0.8506 (4)0.0324 (18)
H21A0.6603−0.01560.84280.039*
H21B0.78330.00690.88800.039*
C220.6175 (6)0.3104 (9)0.8090 (3)0.0302 (17)
H22A0.55390.23970.78990.036*
H22B0.65530.32450.77470.036*
C230.6969 (5)0.2250 (8)0.8721 (3)0.0225 (15)
N10.5029 (5)−0.1870 (7)0.9376 (3)0.0305 (14)
N20.5642 (5)0.0633 (7)0.9216 (3)0.0250 (13)
N30.8870 (5)0.2914 (7)0.9599 (3)0.0296 (14)
N41.0516 (5)0.2108 (8)1.0281 (3)0.0378 (16)
O1W0.5525 (10)−0.4843 (13)1.0222 (6)0.055 (3)0.50
Br10.56570 (7)0.52696 (9)0.83015 (4)0.0391 (3)
Br20.77367 (7)0.05147 (10)0.76915 (4)0.0389 (3)
U11U22U33U12U13U23
C10.029 (4)0.022 (3)0.026 (4)−0.006 (3)0.009 (3)0.005 (3)
C20.032 (4)0.021 (4)0.021 (4)−0.003 (3)0.011 (3)−0.005 (3)
C30.031 (4)0.037 (4)0.023 (4)−0.002 (3)0.010 (3)0.000 (3)
C40.029 (4)0.050 (5)0.028 (4)−0.001 (4)0.005 (3)0.003 (4)
C50.041 (5)0.051 (5)0.031 (4)−0.015 (4)0.005 (4)−0.010 (4)
C60.045 (5)0.039 (5)0.036 (5)−0.020 (4)0.016 (4)−0.014 (4)
C70.044 (5)0.024 (4)0.026 (4)−0.003 (3)0.013 (4)−0.008 (3)
C80.036 (4)0.032 (4)0.033 (4)0.004 (3)0.023 (4)0.004 (3)
C90.038 (5)0.041 (5)0.035 (4)0.008 (4)0.009 (4)0.003 (4)
C100.026 (4)0.029 (4)0.028 (4)−0.006 (3)0.004 (3)0.006 (3)
C110.038 (5)0.049 (5)0.036 (5)0.002 (4)0.015 (4)−0.001 (4)
C120.033 (4)0.039 (4)0.037 (5)−0.003 (4)0.014 (4)−0.001 (4)
C130.032 (4)0.036 (4)0.029 (4)−0.007 (3)0.008 (4)−0.002 (3)
C140.029 (4)0.044 (5)0.034 (4)−0.004 (4)0.007 (4)0.001 (4)
C150.046 (5)0.052 (5)0.034 (5)−0.020 (4)0.013 (4)0.002 (4)
C160.044 (5)0.035 (4)0.041 (5)−0.013 (4)0.017 (4)−0.008 (4)
C170.031 (4)0.020 (4)0.039 (4)−0.005 (3)0.011 (4)0.000 (3)
C200.024 (4)0.032 (4)0.018 (4)−0.012 (3)0.002 (3)0.005 (3)
C210.043 (5)0.031 (4)0.031 (4)−0.006 (3)0.024 (4)−0.004 (3)
C220.024 (4)0.043 (4)0.021 (4)0.004 (3)0.004 (3)0.000 (3)
C230.026 (4)0.020 (3)0.023 (4)−0.003 (3)0.009 (3)0.000 (3)
N10.047 (4)0.021 (3)0.028 (3)0.000 (3)0.017 (3)−0.003 (3)
N20.030 (3)0.028 (3)0.019 (3)−0.002 (3)0.010 (3)0.001 (2)
N30.025 (3)0.027 (3)0.035 (4)−0.003 (3)0.006 (3)0.002 (3)
N40.037 (4)0.041 (4)0.035 (4)0.006 (3)0.010 (3)0.002 (3)
O1W0.062 (8)0.031 (6)0.066 (9)−0.007 (6)0.012 (7)0.014 (6)
Br10.0404 (5)0.0328 (5)0.0436 (5)0.0076 (3)0.0121 (4)0.0086 (3)
Br20.0469 (5)0.0441 (5)0.0302 (4)0.0022 (4)0.0184 (4)−0.0040 (3)
C1—N21.470 (8)C11—H11A0.9600
C1—C231.559 (9)C11—H11B0.9600
C1—H1A0.9700C11—H11C0.9600
C1—H1B0.9700C12—N41.321 (9)
C2—C31.388 (9)C12—N31.377 (9)
C2—N21.389 (9)C13—C201.381 (10)
C2—C71.413 (9)C13—C141.383 (10)
C3—C41.382 (10)C13—N41.393 (9)
C3—H30.9300C14—C151.377 (11)
C4—C51.396 (11)C14—H140.9300
C4—H40.9300C15—C161.417 (11)
C5—C61.367 (11)C15—H150.9300
C5—H50.9300C16—C171.372 (10)
C6—C71.392 (10)C16—H160.9300
C6—H60.9300C17—C201.408 (10)
C7—N11.397 (9)C17—H170.9300
C8—N11.291 (9)C20—N31.341 (8)
C8—N21.386 (9)C21—C231.526 (9)
C8—C91.481 (10)C21—Br21.951 (7)
C9—H9A0.9600C21—H21A0.9700
C9—H9B0.9600C21—H21B0.9700
C9—H9C0.9600C22—C231.547 (9)
C10—N31.460 (8)C22—Br11.968 (7)
C10—C231.567 (9)C22—H22A0.9700
C10—H10A0.9700C22—H22B0.9700
C10—H10B0.9700O1W—O1Wi1.39 (2)
C11—C121.486 (10)
N2—C1—C23115.9 (5)N4—C12—C11123.5 (7)
N2—C1—H1A108.3N3—C12—C11124.9 (7)
C23—C1—H1A108.3C20—C13—C14121.8 (7)
N2—C1—H1B108.3C20—C13—N4109.2 (6)
C23—C1—H1B108.3C14—C13—N4129.1 (7)
H1A—C1—H1B107.4C15—C14—C13118.1 (7)
C3—C2—N2134.2 (6)C15—C14—H14121.0
C3—C2—C7120.9 (7)C13—C14—H14121.0
N2—C2—C7104.9 (6)C14—C15—C16120.8 (8)
C4—C3—C2117.3 (7)C14—C15—H15119.6
C4—C3—H3121.3C16—C15—H15119.6
C2—C3—H3121.3C17—C16—C15120.8 (8)
C3—C4—C5121.5 (7)C17—C16—H16119.6
C3—C4—H4119.2C15—C16—H16119.6
C5—C4—H4119.2C16—C17—C20118.0 (7)
C6—C5—C4121.8 (7)C16—C17—H17121.0
C6—C5—H5119.1C20—C17—H17121.0
C4—C5—H5119.1N3—C20—C13107.1 (6)
C5—C6—C7117.6 (7)N3—C20—C17132.4 (7)
C5—C6—H6121.2C13—C20—C17120.5 (6)
C7—C6—H6121.2C23—C21—Br2114.9 (5)
C6—C7—N1129.8 (7)C23—C21—H21A108.5
C6—C7—C2120.8 (7)Br2—C21—H21A108.5
N1—C7—C2109.3 (6)C23—C21—H21B108.5
N1—C8—N2112.9 (6)Br2—C21—H21B108.5
N1—C8—C9123.9 (7)H21A—C21—H21B107.5
N2—C8—C9123.1 (7)C23—C22—Br1112.9 (4)
C8—C9—H9A109.5C23—C22—H22A109.0
C8—C9—H9B109.5Br1—C22—H22A109.0
H9A—C9—H9B109.5C23—C22—H22B109.0
C8—C9—H9C109.5Br1—C22—H22B109.0
H9A—C9—H9C109.5H22A—C22—H22B107.8
H9B—C9—H9C109.5C21—C23—C22108.2 (6)
N3—C10—C23118.0 (5)C21—C23—C1107.9 (5)
N3—C10—H10A107.8C22—C23—C1111.9 (5)
C23—C10—H10A107.8C21—C23—C10112.1 (6)
N3—C10—H10B107.8C22—C23—C10106.8 (5)
C23—C10—H10B107.8C1—C23—C10110.0 (5)
H10A—C10—H10B107.1C8—N1—C7106.2 (6)
C12—C11—H11A109.5C8—N2—C2106.7 (5)
C12—C11—H11B109.5C8—N2—C1125.7 (6)
H11A—C11—H11B109.5C2—N2—C1127.5 (6)
C12—C11—H11C109.5C20—N3—C12107.1 (6)
H11A—C11—H11C109.5C20—N3—C10124.8 (6)
H11B—C11—H11C109.5C12—N3—C10126.8 (6)
N4—C12—N3111.7 (6)C12—N4—C13104.9 (6)
N2—C2—C3—C4−178.8 (7)N3—C10—C23—C21−66.2 (8)
C7—C2—C3—C4−0.7 (10)N3—C10—C23—C22175.5 (6)
C2—C3—C4—C5−0.7 (10)N3—C10—C23—C153.8 (8)
C3—C4—C5—C62.0 (12)N2—C8—N1—C70.7 (8)
C4—C5—C6—C7−1.7 (12)C9—C8—N1—C7179.1 (6)
C5—C6—C7—N1177.4 (7)C6—C7—N1—C8−179.0 (7)
C5—C6—C7—C20.3 (11)C2—C7—N1—C8−1.6 (8)
C3—C2—C7—C61.0 (10)N1—C8—N2—C20.5 (8)
N2—C2—C7—C6179.5 (6)C9—C8—N2—C2−178.0 (6)
C3—C2—C7—N1−176.7 (6)N1—C8—N2—C1178.2 (6)
N2—C2—C7—N11.9 (7)C9—C8—N2—C1−0.2 (10)
C20—C13—C14—C15−2.1 (11)C3—C2—N2—C8176.8 (7)
N4—C13—C14—C15178.0 (7)C7—C2—N2—C8−1.4 (7)
C13—C14—C15—C160.2 (11)C3—C2—N2—C1−0.8 (12)
C14—C15—C16—C170.8 (11)C7—C2—N2—C1−179.1 (6)
C15—C16—C17—C200.1 (10)C23—C1—N2—C899.7 (7)
C14—C13—C20—N3−179.9 (7)C23—C1—N2—C2−83.0 (8)
N4—C13—C20—N30.1 (8)C13—C20—N3—C12−1.5 (7)
C14—C13—C20—C173.0 (10)C17—C20—N3—C12175.1 (7)
N4—C13—C20—C17−177.0 (6)C13—C20—N3—C10−169.2 (6)
C16—C17—C20—N3−178.2 (7)C17—C20—N3—C107.4 (11)
C16—C17—C20—C13−1.9 (10)N4—C12—N3—C202.6 (8)
Br2—C21—C23—C2249.9 (7)C11—C12—N3—C20−176.8 (7)
Br2—C21—C23—C1171.1 (5)N4—C12—N3—C10169.9 (6)
Br2—C21—C23—C10−67.6 (7)C11—C12—N3—C10−9.5 (11)
Br1—C22—C23—C21176.2 (4)C23—C10—N3—C20−94.6 (8)
Br1—C22—C23—C157.5 (6)C23—C10—N3—C12100.1 (8)
Br1—C22—C23—C10−62.9 (6)N3—C12—N4—C13−2.4 (8)
N2—C1—C23—C21−40.4 (8)C11—C12—N4—C13177.0 (7)
N2—C1—C23—C2278.5 (7)C20—C13—N4—C121.5 (8)
N2—C1—C23—C10−162.9 (5)C14—C13—N4—C12−178.6 (8)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-[2,2-Bis(1,3-benzimidazol-1-ylmeth-yl)-3-bromo-prop-yl]-1,3-benzimidazole.

Authors:  Tai-Bao Wei; Yan-Yun Lu; Cheng Cao; Hong Yao; You-Ming Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30
  2 in total

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