Literature DB >> 22412709

2-(4-Methyl-phen-yl)-5-[({[5-(4-methyl-phen-yl)-1,3,4-thia-diazol-2-yl]sulfan-yl}meth-yl)sulfan-yl]-1,3,4-thia-diazole.

Yong Wang, Wen-Ge Zhang, Yu-Bo Wang, Jing-Wen Yu, Lin Zhou.   

Abstract

In the title compound, C(19)H(16)N(4)S(4), the mol-ecules exhibit a butterfly conformation, where the thia-diazole and attached benzene rings in two wings are almost coplanar, with dihedral angles of 0.8 (3) and 0.9 (3)°, respectively, while the two thia-diazole rings form a dihedral angle of 46.3 (3)°.

Entities:  

Year:  2012        PMID: 22412709      PMCID: PMC3297906          DOI: 10.1107/S1600536812007520

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of 1,3,4-thia­diazole derivatives, see: Nakagawa et al. (1996 ▶); Wang et al. (1999 ▶); Carvalho et al. (2004 ▶). For the crystal structures of related compounds, see: Li et al. (2011 ▶); Wang et al. (2010 ▶).

Experimental

Crystal data

C19H16N4S4 M = 428.60 Monoclinic, a = 16.8944 (14) Å b = 4.1959 (5) Å c = 27.107 (2) Å β = 96.084 (8)° V = 1910.7 (3) Å3 Z = 4 Mo Kα radiation μ = 0.51 mm−1 T = 113 K 0.50 × 0.04 × 0.04 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.785, T max = 0.980 14969 measured reflections 4535 independent reflections 2927 reflections with I > 2σ(I) R int = 0.094

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.142 S = 0.96 4535 reflections 246 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.60 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812007520/cv5245sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007520/cv5245Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007520/cv5245Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H16N4S4F(000) = 888
Mr = 428.60Dx = 1.490 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5461 reflections
a = 16.8944 (14) Åθ = 1.4–27.8°
b = 4.1959 (5) ŵ = 0.51 mm1
c = 27.107 (2) ÅT = 113 K
β = 96.084 (8)°Prism, colourless
V = 1910.7 (3) Å30.50 × 0.04 × 0.04 mm
Z = 4
Rigaku Saturn CCD area-detector diffractometer4535 independent reflections
Radiation source: rotating anode2927 reflections with I > 2σ(I)
Multilayer monochromatorRint = 0.094
Detector resolution: 14.22 pixels mm-1θmax = 27.8°, θmin = 1.4°
φ and ω scansh = −22→22
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −5→4
Tmin = 0.785, Tmax = 0.980l = −35→31
14969 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H-atom parameters constrained
S = 0.96w = 1/[σ2(Fo2) + (0.0566P)2] where P = (Fo2 + 2Fc2)/3
4535 reflections(Δ/σ)max = 0.001
246 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.60 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.41711 (5)0.77165 (19)−0.01333 (3)0.0266 (2)
S20.39123 (5)1.1072 (2)0.08165 (3)0.0282 (2)
S30.26282 (5)1.06832 (19)0.15267 (3)0.0270 (2)
S40.33462 (5)1.07934 (19)0.26002 (3)0.0268 (2)
N10.26848 (16)0.6479 (6)−0.02748 (10)0.0285 (6)
N20.27897 (16)0.8187 (6)0.01681 (10)0.0288 (6)
N30.39960 (17)1.3525 (6)0.18983 (10)0.0292 (6)
N40.44931 (16)1.4137 (6)0.23312 (10)0.0289 (6)
C10.3546 (2)−0.0838 (8)−0.23078 (12)0.0349 (8)
H1A0.3223−0.2782−0.23130.052*
H1B0.4101−0.1403−0.23410.052*
H1C0.33430.0547−0.25840.052*
C20.3500 (2)0.0891 (7)−0.18231 (12)0.0263 (7)
C30.4179 (2)0.2240 (8)−0.15616 (12)0.0296 (8)
H30.46800.2007−0.16870.036*
C40.4135 (2)0.3902 (7)−0.11251 (12)0.0283 (7)
H40.46020.4807−0.09550.034*
C50.34068 (19)0.4251 (7)−0.09335 (11)0.0237 (7)
C60.27246 (19)0.2897 (7)−0.11872 (12)0.0268 (7)
H60.22250.3126−0.10600.032*
C70.2776 (2)0.1227 (7)−0.16224 (12)0.0275 (7)
H70.23090.0289−0.17880.033*
C80.33463 (19)0.6019 (7)−0.04729 (11)0.0242 (7)
C90.35275 (19)0.8994 (7)0.02832 (11)0.0255 (7)
C100.2996 (2)1.2661 (7)0.10072 (12)0.0277 (7)
H10A0.30801.49390.10920.033*
H10B0.25811.25510.07210.033*
C110.33781 (19)1.1814 (7)0.19861 (12)0.0247 (7)
C120.42392 (18)1.2861 (7)0.27270 (12)0.0258 (7)
C130.46511 (19)1.3186 (7)0.32295 (12)0.0262 (7)
C140.43531 (19)1.1764 (8)0.36363 (12)0.0278 (7)
H140.38721.05800.35910.033*
C150.4755 (2)1.2068 (8)0.41067 (12)0.0292 (7)
H150.45401.10960.43800.035*
C160.54653 (19)1.3758 (7)0.41906 (12)0.0285 (7)
C170.5753 (2)1.5225 (8)0.37799 (12)0.0286 (7)
H170.62311.64340.38260.034*
C180.53548 (19)1.4947 (8)0.33077 (12)0.0279 (7)
H180.55621.59610.30350.033*
C190.5928 (2)1.3981 (9)0.46959 (12)0.0346 (8)
H19A0.63981.26020.47080.052*
H19B0.55901.32940.49490.052*
H19C0.60961.61900.47600.052*
U11U22U33U12U13U23
S10.0174 (4)0.0334 (5)0.0289 (4)−0.0015 (3)0.0025 (3)−0.0022 (4)
S20.0207 (4)0.0359 (5)0.0279 (4)−0.0021 (3)0.0019 (3)−0.0029 (4)
S30.0204 (4)0.0320 (5)0.0285 (4)−0.0002 (3)0.0022 (3)−0.0018 (3)
S40.0197 (4)0.0329 (5)0.0279 (4)−0.0018 (3)0.0022 (3)0.0007 (3)
N10.0230 (15)0.0343 (16)0.0279 (14)0.0008 (12)0.0014 (12)−0.0048 (12)
N20.0242 (15)0.0342 (16)0.0282 (14)0.0000 (12)0.0035 (12)−0.0044 (12)
N30.0228 (15)0.0352 (16)0.0296 (14)−0.0016 (12)0.0026 (12)0.0011 (12)
N40.0211 (15)0.0357 (16)0.0297 (15)−0.0025 (12)0.0013 (12)0.0020 (12)
C10.034 (2)0.037 (2)0.0336 (19)0.0041 (16)0.0044 (16)−0.0033 (16)
C20.0266 (18)0.0262 (17)0.0261 (16)0.0032 (14)0.0024 (14)0.0034 (13)
C30.0204 (17)0.0360 (19)0.0332 (18)0.0014 (14)0.0064 (15)0.0030 (15)
C40.0199 (17)0.0312 (18)0.0332 (18)−0.0029 (14)0.0003 (14)−0.0010 (14)
C50.0209 (17)0.0231 (16)0.0262 (16)0.0013 (13)−0.0009 (13)0.0034 (13)
C60.0203 (17)0.0292 (17)0.0311 (17)0.0002 (13)0.0035 (14)0.0023 (14)
C70.0214 (17)0.0306 (18)0.0303 (17)−0.0017 (14)0.0012 (14)−0.0005 (14)
C80.0196 (16)0.0231 (16)0.0290 (16)0.0002 (13)−0.0020 (13)0.0030 (13)
C90.0230 (17)0.0279 (17)0.0261 (16)0.0001 (14)0.0045 (14)0.0043 (14)
C100.0249 (18)0.0283 (17)0.0290 (17)0.0051 (14)−0.0019 (14)−0.0024 (14)
C110.0185 (16)0.0265 (17)0.0291 (16)0.0049 (13)0.0034 (13)0.0005 (13)
C120.0151 (16)0.0272 (17)0.0355 (18)0.0012 (13)0.0041 (14)−0.0025 (14)
C130.0169 (16)0.0276 (17)0.0342 (18)0.0044 (13)0.0029 (14)−0.0012 (14)
C140.0156 (16)0.0309 (18)0.0371 (18)0.0004 (13)0.0028 (14)−0.0020 (15)
C150.0217 (17)0.0355 (19)0.0308 (17)−0.0002 (14)0.0044 (14)−0.0010 (15)
C160.0193 (17)0.0306 (18)0.0350 (18)0.0046 (14)0.0001 (14)−0.0035 (15)
C170.0169 (16)0.0317 (18)0.0373 (19)0.0002 (14)0.0027 (14)−0.0037 (15)
C180.0210 (17)0.0300 (17)0.0329 (17)0.0012 (14)0.0043 (14)−0.0028 (15)
C190.0221 (18)0.046 (2)0.0344 (18)0.0029 (15)−0.0023 (15)−0.0011 (16)
S1—C91.733 (3)C4—H40.9500
S1—C81.739 (3)C5—C61.398 (4)
S2—C91.753 (3)C5—C81.465 (4)
S2—C101.810 (3)C6—C71.383 (4)
S3—C111.745 (3)C6—H60.9500
S3—C101.801 (3)C7—H70.9500
S4—C111.725 (3)C10—H10A0.9900
S4—C121.743 (3)C10—H10B0.9900
N1—C81.304 (4)C12—C131.469 (4)
N1—N21.393 (4)C13—C141.394 (4)
N2—C91.297 (4)C13—C181.397 (4)
N3—C111.310 (4)C14—C151.386 (4)
N3—N41.393 (4)C14—H140.9500
N4—C121.311 (4)C15—C161.391 (4)
C1—C21.510 (4)C15—H150.9500
C1—H1A0.9800C16—C171.403 (5)
C1—H1B0.9800C16—C191.506 (4)
C1—H1C0.9800C17—C181.386 (5)
C2—C71.398 (4)C17—H170.9500
C2—C31.403 (4)C18—H180.9500
C3—C41.382 (4)C19—H19A0.9800
C3—H30.9500C19—H19B0.9800
C4—C51.393 (4)C19—H19C0.9800
C9—S1—C887.06 (15)S1—C9—S2119.18 (19)
C9—S2—C1099.51 (15)S3—C10—S2115.46 (17)
C11—S3—C1098.52 (15)S3—C10—H10A108.4
C11—S4—C1287.24 (15)S2—C10—H10A108.4
C8—N1—N2113.2 (3)S3—C10—H10B108.4
C9—N2—N1111.9 (3)S2—C10—H10B108.4
C11—N3—N4111.6 (3)H10A—C10—H10B107.5
C12—N4—N3113.2 (3)N3—C11—S4114.7 (2)
C2—C1—H1A109.5N3—C11—S3123.5 (2)
C2—C1—H1B109.5S4—C11—S3121.77 (18)
H1A—C1—H1B109.5N4—C12—C13123.9 (3)
C2—C1—H1C109.5N4—C12—S4113.2 (2)
H1A—C1—H1C109.5C13—C12—S4123.0 (2)
H1B—C1—H1C109.5C14—C13—C18118.6 (3)
C7—C2—C3117.7 (3)C14—C13—C12121.2 (3)
C7—C2—C1121.0 (3)C18—C13—C12120.1 (3)
C3—C2—C1121.3 (3)C15—C14—C13120.3 (3)
C4—C3—C2121.4 (3)C15—C14—H14119.8
C4—C3—H3119.3C13—C14—H14119.8
C2—C3—H3119.3C14—C15—C16121.9 (3)
C3—C4—C5120.2 (3)C14—C15—H15119.1
C3—C4—H4119.9C16—C15—H15119.1
C5—C4—H4119.9C15—C16—C17117.3 (3)
C4—C5—C6119.2 (3)C15—C16—C19122.4 (3)
C4—C5—C8121.0 (3)C17—C16—C19120.3 (3)
C6—C5—C8119.8 (3)C18—C17—C16121.4 (3)
C7—C6—C5120.2 (3)C18—C17—H17119.3
C7—C6—H6119.9C16—C17—H17119.3
C5—C6—H6119.9C17—C18—C13120.4 (3)
C6—C7—C2121.3 (3)C17—C18—H18119.8
C6—C7—H7119.3C13—C18—H18119.8
C2—C7—H7119.3C16—C19—H19A109.5
N1—C8—C5124.5 (3)C16—C19—H19B109.5
N1—C8—S1113.2 (2)H19A—C19—H19B109.5
C5—C8—S1122.3 (2)C16—C19—H19C109.5
N2—C9—S1114.6 (2)H19A—C19—H19C109.5
N2—C9—S2126.2 (3)H19B—C19—H19C109.5
C8—N1—N2—C91.0 (4)C11—S3—C10—S267.8 (2)
C11—N3—N4—C120.4 (4)C9—S2—C10—S3104.05 (19)
C7—C2—C3—C4−1.3 (5)N4—N3—C11—S4−0.1 (3)
C1—C2—C3—C4178.2 (3)N4—N3—C11—S3178.8 (2)
C2—C3—C4—C50.4 (5)C12—S4—C11—N3−0.2 (3)
C3—C4—C5—C60.1 (5)C12—S4—C11—S3−179.1 (2)
C3—C4—C5—C8−179.6 (3)C10—S3—C11—N3−2.0 (3)
C4—C5—C6—C70.2 (5)C10—S3—C11—S4176.80 (19)
C8—C5—C6—C7179.9 (3)N3—N4—C12—C13−179.3 (3)
C5—C6—C7—C2−1.0 (5)N3—N4—C12—S4−0.6 (3)
C3—C2—C7—C61.6 (5)C11—S4—C12—N40.4 (2)
C1—C2—C7—C6−177.9 (3)C11—S4—C12—C13179.2 (3)
N2—N1—C8—C5178.9 (3)N4—C12—C13—C14−179.8 (3)
N2—N1—C8—S1−0.9 (3)S4—C12—C13—C141.6 (4)
C4—C5—C8—N1179.1 (3)N4—C12—C13—C180.3 (5)
C6—C5—C8—N1−0.7 (5)S4—C12—C13—C18−178.3 (2)
C4—C5—C8—S1−1.2 (4)C18—C13—C14—C15−0.8 (5)
C6—C5—C8—S1179.1 (2)C12—C13—C14—C15179.3 (3)
C9—S1—C8—N10.4 (2)C13—C14—C15—C16−0.5 (5)
C9—S1—C8—C5−179.4 (3)C14—C15—C16—C171.5 (5)
N1—N2—C9—S1−0.7 (3)C14—C15—C16—C19−177.1 (3)
N1—N2—C9—S2−178.4 (2)C15—C16—C17—C18−1.3 (5)
C8—S1—C9—N20.2 (3)C19—C16—C17—C18177.4 (3)
C8—S1—C9—S2178.1 (2)C16—C17—C18—C130.0 (5)
C10—S2—C9—N2−16.9 (3)C14—C13—C18—C171.0 (5)
C10—S2—C9—S1165.53 (19)C12—C13—C18—C17−179.1 (3)
  4 in total

1.  Synthesis and antitrypanosomal profile of new functionalized 1,3,4-thiadiazole-2-arylhydrazone derivatives, designed as non-mutagenic megazol analogues.

Authors:  Samir A Carvalho; Edson F da Silva; Ricardo M Santa-Rita; Solange L de Castro; Carlos A M Fraga
Journal:  Bioorg Med Chem Lett       Date:  2004-12-20       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  1,4-Bis[(5-phenyl-1,3,4-thia-diazol-2-yl)sulfan-yl]butane.

Authors:  Shao-Feng Li; Jing-Jing Zhang; Xiao-Yu Jia; Yan Gao; Wei Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-23

4.  Bis[(5-phenyl-1,3,4-thia-diazol-2-yl)sulfan-yl]methane.

Authors:  He-Wen Wang; Yan Gao; Wei Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-06
  4 in total

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