Literature DB >> 22412699

1,5-Diamino-2,6-dibromo-9,10-anthraquinone.

Nadine Seidel1, Wilhelm Seichter, Edwin Weber.   

Abstract

In the title compound, C(14)H(8)Br(2)N(2)O(2), the mol-ecular structure features intra-molecular N-H⋯O [2.639 (2) Å and 130°] and N-H⋯Br [3.053 (2) Å and 114°] hydrogen bonding. Due to inversion symmetry, the asymmetric part of the unit cell consits of one half-mol-ecule. In the crystal, inversion dimers linked by pairs of N-H⋯O [2.955 (2) Å and 135°] hydrogen bonds occur. The structure also features C=O⋯π [3.228 (2) Å] and Br⋯Br [3.569 (1) Å] contacts.

Entities:  

Year:  2012        PMID: 22412699      PMCID: PMC3297896          DOI: 10.1107/S1600536812004229

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on anthraquinones and their pharmacological potential, see: Thomson (1967 ▶); Bohacova et al. (1998 ▶). For the X-ray structure of anthraquinone at different temperatures, see: Fu & Brock (1998 ▶). For a description of the resonance assisted hydrogen bond (RAHB) model, see: Gilli et al. (1989 ▶); Sanz et al. (2008 ▶). For structures with typical intramolecular N—H⋯Br, N—H⋯O and C=O⋯π contacts, see: Brammer et al. (2001 ▶); Shimpi et al. (2007 ▶); Marten et al. (2007 ▶). For the synthetic procedure, see: Scholl & Krieger (1904 ▶).

Experimental

Crystal data

C14H8Br2N2O2 M = 396.04 Triclinic, a = 4.4177 (1) Å b = 6.2240 (2) Å c = 11.8410 (3) Å α = 94.455 (2)° β = 99.970 (2)° γ = 100.859 (2)° V = 312.87 (2) Å3 Z = 1 Mo Kα radiation μ = 6.48 mm−1 T = 153 K 0.58 × 0.22 × 0.05 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.117, T max = 0.759 7769 measured reflections 2003 independent reflections 1844 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.071 S = 0.96 2003 reflections 91 parameters H-atom parameters constrained Δρmax = 0.86 e Å−3 Δρmin = −0.63 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812004229/im2352sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004229/im2352Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812004229/im2352Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H8Br2N2O2Z = 1
Mr = 396.04F(000) = 192
Triclinic, P1Dx = 2.102 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.4177 (1) ÅCell parameters from 5166 reflections
b = 6.2240 (2) Åθ = 3.2–38.8°
c = 11.8410 (3) ŵ = 6.48 mm1
α = 94.455 (2)°T = 153 K
β = 99.970 (2)°Irregular, red
γ = 100.859 (2)°0.58 × 0.22 × 0.05 mm
V = 312.87 (2) Å3
Bruker APEXII CCD area-detector diffractometer2003 independent reflections
Radiation source: fine-focus sealed tube1844 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
φ and ω scansθmax = 31.1°, θmin = 3.4°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −6→6
Tmin = 0.117, Tmax = 0.759k = −9→9
7769 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.071H-atom parameters constrained
S = 0.96w = 1/[σ2(Fo2) + (0.0454P)2 + 0.2515P] where P = (Fo2 + 2Fc2)/3
2003 reflections(Δ/σ)max < 0.001
91 parametersΔρmax = 0.86 e Å3
0 restraintsΔρmin = −0.63 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.18844 (5)0.30597 (3)0.572710 (15)0.02812 (8)
O10.1853 (3)0.3189 (2)1.04118 (13)0.0228 (3)
N10.1114 (4)0.3920 (3)0.82251 (13)0.0197 (3)
H1A0.04390.45630.76220.024*
H1B0.07770.43510.89100.024*
C10.3215 (4)0.1566 (3)0.69978 (14)0.0184 (3)
C20.4697 (4)−0.0157 (3)0.68165 (15)0.0205 (3)
H20.4972−0.06060.60620.025*
C30.5785 (4)−0.1235 (3)0.77398 (15)0.0188 (3)
H30.6811−0.24210.76180.023*
C40.5371 (4)−0.0574 (3)0.88430 (14)0.0152 (3)
C50.3340 (4)0.1755 (3)1.02023 (15)0.0159 (3)
C60.3806 (4)0.1154 (3)0.90319 (14)0.0145 (3)
C70.2662 (4)0.2273 (3)0.80995 (14)0.0158 (3)
U11U22U33U12U13U23
Br10.04356 (14)0.03062 (12)0.01527 (11)0.01733 (9)0.00600 (8)0.00918 (7)
O10.0304 (7)0.0252 (7)0.0177 (6)0.0166 (5)0.0062 (5)0.0020 (5)
N10.0264 (7)0.0191 (7)0.0164 (7)0.0110 (6)0.0032 (5)0.0048 (5)
C10.0223 (7)0.0205 (8)0.0132 (7)0.0063 (6)0.0027 (5)0.0042 (6)
C20.0257 (8)0.0246 (8)0.0123 (7)0.0074 (6)0.0045 (6)0.0019 (6)
C30.0249 (8)0.0185 (7)0.0152 (7)0.0090 (6)0.0050 (6)0.0011 (6)
C40.0161 (7)0.0162 (7)0.0138 (7)0.0044 (5)0.0030 (5)0.0012 (5)
C50.0167 (7)0.0154 (7)0.0156 (7)0.0041 (5)0.0027 (5)0.0016 (6)
C60.0161 (7)0.0150 (7)0.0127 (7)0.0038 (5)0.0026 (5)0.0011 (5)
C70.0173 (7)0.0154 (7)0.0150 (7)0.0038 (5)0.0027 (5)0.0019 (5)
Br1—C11.8949 (18)C2—H20.9500
O1—C51.238 (2)C3—C41.392 (2)
N1—C71.348 (2)C3—H30.9500
N1—H1A0.8800C4—C61.407 (2)
N1—H1B0.8800C5—C61.467 (2)
C1—C21.379 (3)C5—C4i1.485 (2)
C1—C71.420 (2)C6—C71.421 (2)
C2—C31.389 (3)
C7—N1—H1A120.0C3—C4—C6120.66 (16)
C7—N1—H1B120.0C3—C4—C5i117.24 (15)
H1A—N1—H1B120.0C6—C4—C5i122.10 (15)
C2—C1—C7122.64 (16)O1—C5—C6121.83 (16)
C2—C1—Br1118.66 (13)O1—C5—C4i119.18 (16)
C7—C1—Br1118.69 (13)C6—C5—C4i118.98 (15)
C1—C2—C3119.84 (16)C4—C6—C7120.42 (15)
C1—C2—H2120.1C4—C6—C5118.89 (15)
C3—C2—H2120.1C7—C6—C5120.69 (15)
C2—C3—C4119.87 (16)N1—C7—C1120.38 (16)
C2—C3—H3120.1N1—C7—C6123.08 (15)
C4—C3—H3120.1C1—C7—C6116.54 (15)
Br1—Br1—C1—C20.00 (9)O1—C5—C6—C4−176.53 (16)
Br1—Br1—C1—C70.00 (10)C4i—C5—C6—C42.1 (2)
C7—C1—C2—C3−1.7 (3)O1—C5—C6—C72.6 (2)
Br1—C1—C2—C3177.95 (14)C4i—C5—C6—C7−178.77 (14)
C1—C2—C3—C40.1 (3)C2—C1—C7—N1−177.84 (17)
C2—C3—C4—C61.1 (3)Br1—C1—C7—N12.5 (2)
C2—C3—C4—C5i−178.47 (16)C2—C1—C7—C61.9 (2)
O1—O1—C5—C60.0 (5)Br1—C1—C7—C6−177.76 (12)
O1—O1—C5—C4i0.0 (6)C4—C6—C7—N1179.15 (16)
C3—C4—C6—C7−0.9 (2)C5—C6—C7—N10.0 (2)
C5i—C4—C6—C7178.70 (15)C4—C6—C7—C1−0.6 (2)
C3—C4—C6—C5178.25 (15)C5—C6—C7—C1−179.71 (15)
C5i—C4—C6—C5−2.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1B···O10.881.992.639 (2)130
N1—H1A···Br10.882.593.053 (2)114
N1—H1B···O1ii0.882.272.955 (2)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯O10.881.992.639 (2)130
N1—H1A⋯Br10.882.593.053 (2)114
N1—H1B⋯O1i0.882.272.955 (2)135

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bonding in tropolone, 2-aminotropone, and aminotroponimine: no evidence of resonance-assisted hydrogen-bond effects.

Authors:  Pablo Sanz; Otilia Mó; Manuel Yáñez; José Elguero
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

3.  Interaction of lactate dehydrogenase with anthraquinone dyes: characterization of ligands for dye-ligand chromatography.

Authors:  V Bohácová; P Docolomanský; A Breier; P Gemeiner; A Ziegelhöffer
Journal:  J Chromatogr B Biomed Sci Appl       Date:  1998-09-11
  3 in total
  1 in total

1.  Novel Series of Diaminoanthraquinone-Based π-Extendable Building Blocks with Tunable Optoelectronic Properties.

Authors:  Ganesh Masilamani; Harikrishna Batchu; Dana Amsallem; Anjan Bedi
Journal:  ACS Omega       Date:  2022-07-13
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.