Literature DB >> 22412695

5-Amino-4-bromo-2,3-dihydro-1H-inden-1-one.

Ismail Celik, Mehmet Akkurt, Makbule Yılmaz, Ahmet Tutar, Ramazan Erenler, Santiago García-Granda.   

Abstract

In the title compound, C(9)H(8)BrNO, the non-H-atom framework is essentially planar, with a maximum deviation of 0.087 (3) Å. In the crystal, mol-ecules are inter-connected into a three-dimensional network by C-H⋯O and N-H⋯O hydrogen bonds. In addition, C-H⋯π inter-actions and a π-π stacking inter-action, with a centroid-centroid distance of 3.5535 (19) Å, are also observed.

Entities:  

Year:  2012        PMID: 22412695      PMCID: PMC3297892          DOI: 10.1107/S1600536812007489

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C9H8BrNO M = 226.06 Monoclinic, a = 12.6362 (4) Å b = 8.3655 (2) Å c = 17.4913 (5) Å β = 113.128 (4)° V = 1700.37 (10) Å3 Z = 8 Cu Kα radiation μ = 6.16 mm−1 T = 297 K 0.77 × 0.60 × 0.08 mm

Data collection

Agilent Xcalibur Ruby Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.031, T max = 0.616 3085 measured reflections 1594 independent reflections 1544 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.134 S = 1.06 1594 reflections 117 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.31 e Å−3 Δρmin = −0.89 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812007489/fj2519sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007489/fj2519Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007489/fj2519Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H8BrNOF(000) = 896
Mr = 226.06Dx = 1.766 Mg m3
Monoclinic, C2/cCu Kα radiation, λ = 1.5418 Å
Hall symbol: -C 2ycCell parameters from 2518 reflections
a = 12.6362 (4) Åθ = 5.5–70.2°
b = 8.3655 (2) ŵ = 6.16 mm1
c = 17.4913 (5) ÅT = 297 K
β = 113.128 (4)°Plate, colourless
V = 1700.37 (10) Å30.77 × 0.60 × 0.08 mm
Z = 8
Agilent Xcalibur Ruby Gemini diffractometer1594 independent reflections
Radiation source: Enhance (Cu) X-ray Source1544 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
Detector resolution: 10.2673 pixels mm-1θmax = 70.4°, θmin = 5.5°
ω scansh = −13→15
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −6→10
Tmin = 0.031, Tmax = 0.616l = −19→21
3085 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.1063P)2 + 1.0273P] where P = (Fo2 + 2Fc2)/3
1594 reflections(Δ/σ)max = 0.001
117 parametersΔρmax = 1.31 e Å3
3 restraintsΔρmin = −0.89 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.52857 (3)0.21900 (4)0.63347 (2)0.0470 (2)
O10.2303 (2)0.4628 (3)0.26770 (13)0.0544 (8)
N10.3501 (3)0.4337 (4)0.66390 (17)0.0535 (9)
C10.3037 (3)0.4330 (4)0.41603 (17)0.0381 (8)
C20.2318 (3)0.5262 (4)0.44160 (18)0.0422 (8)
C30.2489 (3)0.5253 (4)0.5240 (2)0.0431 (9)
C40.3357 (3)0.4322 (4)0.58293 (17)0.0399 (8)
C50.4086 (2)0.3422 (3)0.55556 (16)0.0368 (8)
C60.3917 (2)0.3426 (3)0.47291 (16)0.0345 (8)
C70.4597 (3)0.2542 (4)0.4321 (2)0.0430 (9)
C80.4016 (3)0.3016 (4)0.3399 (2)0.0493 (10)
C90.3006 (3)0.4086 (4)0.33249 (17)0.0425 (8)
H1N0.301 (3)0.472 (5)0.679 (3)0.062 (12)*
H20.173500.587600.403500.0510*
H2N0.387 (4)0.369 (6)0.701 (3)0.10 (2)*
H30.201800.587900.541500.0520*
H7A0.455500.139600.438900.0520*
H7B0.539800.286700.455400.0520*
H8A0.455300.358700.322600.0590*
H8B0.374900.207400.305300.0590*
U11U22U33U12U13U23
Br10.0466 (3)0.0552 (4)0.0315 (3)0.0060 (1)0.0070 (2)0.0028 (1)
O10.0541 (13)0.0741 (16)0.0303 (10)−0.0051 (12)0.0114 (10)0.0072 (10)
N10.0619 (17)0.0712 (18)0.0322 (13)0.0012 (15)0.0237 (13)−0.0070 (12)
C10.0412 (14)0.0433 (13)0.0290 (13)−0.0056 (12)0.0128 (11)0.0001 (10)
C20.0393 (14)0.0471 (15)0.0368 (15)0.0014 (12)0.0114 (12)0.0050 (12)
C30.0443 (15)0.0451 (14)0.0443 (16)0.0013 (13)0.0221 (13)−0.0033 (12)
C40.0444 (14)0.0451 (14)0.0305 (14)−0.0062 (12)0.0152 (12)−0.0046 (11)
C50.0386 (13)0.0414 (14)0.0274 (12)−0.0026 (12)0.0098 (10)−0.0017 (10)
C60.0371 (13)0.0362 (13)0.0298 (13)−0.0009 (10)0.0126 (11)−0.0008 (10)
C70.0438 (17)0.0496 (13)0.0376 (17)0.0024 (14)0.0182 (14)−0.0045 (13)
C80.0578 (19)0.0602 (18)0.0344 (16)−0.0064 (15)0.0230 (15)−0.0064 (13)
C90.0474 (15)0.0501 (15)0.0299 (14)−0.0140 (13)0.0151 (12)−0.0006 (11)
Br1—C51.896 (3)C5—C61.376 (4)
O1—C91.220 (4)C6—C71.509 (5)
N1—C41.355 (4)C7—C81.539 (5)
N1—H1N0.83 (4)C8—C91.522 (5)
N1—H2N0.83 (5)C2—H20.9300
C1—C91.461 (4)C3—H30.9300
C1—C21.397 (5)C7—H7A0.9700
C1—C61.389 (4)C7—H7B0.9700
C2—C31.371 (4)C8—H8A0.9700
C3—C41.409 (5)C8—H8B0.9700
C4—C51.411 (5)
H1N—N1—H2N105 (5)C7—C8—C9106.3 (3)
C4—N1—H1N122 (3)O1—C9—C1126.9 (3)
C4—N1—H2N128 (3)O1—C9—C8125.3 (3)
C2—C1—C6120.9 (3)C1—C9—C8107.8 (3)
C2—C1—C9129.3 (3)C1—C2—H2121.00
C6—C1—C9109.9 (3)C3—C2—H2121.00
C1—C2—C3118.7 (3)C2—C3—H3119.00
C2—C3—C4121.9 (3)C4—C3—H3119.00
C3—C4—C5118.1 (3)C6—C7—H7A111.00
N1—C4—C5121.5 (3)C6—C7—H7B111.00
N1—C4—C3120.4 (3)C8—C7—H7A111.00
Br1—C5—C4119.4 (2)C8—C7—H7B111.00
Br1—C5—C6120.5 (2)H7A—C7—H7B109.00
C4—C5—C6120.2 (2)C7—C8—H8A110.00
C1—C6—C5120.3 (3)C7—C8—H8B111.00
C1—C6—C7111.9 (3)C9—C8—H8A110.00
C5—C6—C7127.9 (3)C9—C8—H8B110.00
C6—C7—C8104.1 (3)H8A—C8—H8B109.00
C6—C1—C2—C3−0.8 (5)N1—C4—C5—Br10.6 (4)
C9—C1—C2—C3177.4 (4)N1—C4—C5—C6179.8 (3)
C2—C1—C6—C50.7 (5)C3—C4—C5—Br1178.7 (2)
C2—C1—C6—C7−178.9 (3)C3—C4—C5—C6−2.1 (5)
C9—C1—C6—C5−177.8 (3)Br1—C5—C6—C1180.0 (2)
C9—C1—C6—C72.7 (4)Br1—C5—C6—C7−0.5 (4)
C2—C1—C9—O1−2.6 (6)C4—C5—C6—C10.8 (4)
C2—C1—C9—C8177.6 (4)C4—C5—C6—C7−179.7 (3)
C6—C1—C9—O1175.7 (3)C1—C6—C7—C8−0.1 (4)
C6—C1—C9—C8−4.1 (4)C5—C6—C7—C8−179.7 (3)
C1—C2—C3—C4−0.7 (5)C6—C7—C8—C9−2.4 (3)
C2—C3—C4—N1−179.8 (4)C7—C8—C9—O1−175.9 (3)
C2—C3—C4—C52.1 (5)C7—C8—C9—C14.0 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.83 (4)2.14 (5)2.915 (4)155 (4)
N1—H2N···Br10.83 (5)2.80 (5)3.088 (4)103 (4)
C8—H8B···O1ii0.972.503.448 (4)166
C7—H7B···Cg2iii0.972.853.659 (4)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C1–C6 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.83 (4)2.14 (5)2.915 (4)155 (4)
C8—H8B⋯O1ii0.972.503.448 (4)166
C7—H7BCg2iii0.972.853.659 (4)141

Symmetry codes: (i) ; (ii) ; (iii) .

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