| Literature DB >> 22412683 |
U Chaithanya, Sabine Foro, B Thimme Gowda.
Abstract
In the title compound, C(11)H(12)N(2)O(5), the conformation of the N-H bond in the amide segment is syn to the ortho-nitro group in the benzene ring. The amide C=O and the carboxyl C=O of the acid segment are syn to each other and both are anti to the H atoms on the adjacent -CH(2) groups. Furthermore, the C=O and O-H bonds of the acid group are in syn positions with respect to each other. The dihedral angle between the benzene ring and the amide group is 36.1 (1)°. The amide H atom shows bifurcated intra-molecular hydrogen bonding with an O atom of the ortho-nitro group and an inter-molecular hydrogen bond with the carbonyl O atom of another mol-ecule. In the crystal, the N-H⋯O(C) hydrogen bonds generate a chain running along the [100] direction. Inversion dimers are formed via a pair of O-H⋯O(C) interactions, that form an eight-membered hydrogen-bonded ring involving the carboxyl group.Entities:
Year: 2012 PMID: 22412683 PMCID: PMC3297880 DOI: 10.1107/S1600536812007258
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H12N2O5 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1681 reflections | |
| θ = 3.1–27.8° | |
| µ = 0.12 mm−1 | |
| α = 69.59 (1)° | |
| β = 78.77 (1)° | Needle, yellow |
| γ = 83.62 (2)° | 0.40 × 0.22 × 0.12 mm |
| Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector | 2314 independent reflections |
| Radiation source: fine-focus sealed tube | 1900 reflections with |
| Graphite monochromator | |
| Rotation method data acquisition using ω and phi scans | θmax = 26.4°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 3557 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2314 reflections | (Δ/σ)max = 0.006 |
| 170 parameters | Δρmax = 0.23 e Å−3 |
| 2 restraints | Δρmin = −0.22 e Å−3 |
| Experimental. CrysAlis RED (Oxford Diffraction, 2009) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.0723 (3) | 0.37100 (17) | 0.38806 (15) | 0.0344 (4) | |
| C2 | 0.2308 (4) | 0.40404 (17) | 0.26912 (16) | 0.0351 (4) | |
| C3 | 0.1566 (4) | 0.51144 (18) | 0.17381 (17) | 0.0423 (4) | |
| H3 | 0.2650 | 0.5299 | 0.0960 | 0.051* | |
| C4 | −0.0749 (4) | 0.59120 (18) | 0.19244 (18) | 0.0439 (5) | |
| C5 | −0.2278 (4) | 0.56114 (19) | 0.31041 (19) | 0.0463 (5) | |
| H5 | −0.3823 | 0.6146 | 0.3257 | 0.056* | |
| C6 | −0.1571 (4) | 0.45416 (19) | 0.40568 (17) | 0.0429 (4) | |
| H6 | −0.2652 | 0.4373 | 0.4834 | 0.052* | |
| C7 | −0.0488 (4) | 0.18197 (18) | 0.57398 (16) | 0.0385 (4) | |
| C8 | 0.0872 (4) | 0.0644 (2) | 0.65902 (18) | 0.0474 (5) | |
| H8A | 0.1761 | 0.0914 | 0.7127 | 0.057* | |
| H8B | 0.2330 | 0.0268 | 0.6106 | 0.057* | |
| C9 | −0.1198 (4) | −0.03824 (19) | 0.73683 (18) | 0.0459 (5) | |
| H9A | −0.2447 | −0.0471 | 0.6855 | 0.055* | |
| H9B | −0.0163 | −0.1206 | 0.7655 | 0.055* | |
| C10 | −0.2937 (4) | −0.01095 (18) | 0.84541 (16) | 0.0392 (4) | |
| C11 | −0.1609 (5) | 0.7055 (2) | 0.0885 (2) | 0.0627 (6) | |
| H11A | −0.3126 | 0.6828 | 0.0593 | 0.075* | |
| H11B | −0.0037 | 0.7291 | 0.0228 | 0.075* | |
| H11C | −0.2211 | 0.7774 | 0.1169 | 0.075* | |
| N1 | 0.1378 (3) | 0.26122 (16) | 0.48575 (14) | 0.0402 (4) | |
| H1N | 0.308 (3) | 0.237 (2) | 0.485 (2) | 0.048* | |
| N2 | 0.4831 (3) | 0.32707 (15) | 0.23859 (14) | 0.0422 (4) | |
| O1 | −0.3032 (3) | 0.20209 (15) | 0.58421 (14) | 0.0599 (5) | |
| O2 | −0.2182 (3) | 0.05642 (16) | 0.89554 (14) | 0.0591 (4) | |
| O3 | −0.5284 (3) | −0.07162 (16) | 0.88538 (13) | 0.0533 (4) | |
| H3O | −0.606 (5) | −0.063 (3) | 0.9514 (18) | 0.064* | |
| O4 | 0.5972 (4) | 0.35547 (18) | 0.13202 (15) | 0.0802 (6) | |
| O5 | 0.5750 (3) | 0.23852 (15) | 0.31947 (14) | 0.0579 (4) |
| C1 | 0.0299 (8) | 0.0388 (9) | 0.0306 (8) | −0.0020 (7) | −0.0043 (7) | −0.0073 (7) |
| C2 | 0.0333 (9) | 0.0362 (9) | 0.0355 (9) | −0.0031 (7) | −0.0022 (7) | −0.0129 (7) |
| C3 | 0.0483 (11) | 0.0408 (10) | 0.0327 (9) | −0.0069 (8) | −0.0023 (8) | −0.0070 (8) |
| C4 | 0.0483 (11) | 0.0377 (10) | 0.0411 (10) | −0.0042 (8) | −0.0115 (8) | −0.0048 (8) |
| C5 | 0.0402 (10) | 0.0427 (10) | 0.0497 (11) | 0.0075 (8) | −0.0062 (9) | −0.0114 (9) |
| C6 | 0.0361 (10) | 0.0485 (11) | 0.0363 (9) | 0.0034 (8) | 0.0006 (8) | −0.0096 (8) |
| C7 | 0.0297 (9) | 0.0478 (10) | 0.0306 (8) | 0.0016 (7) | −0.0045 (7) | −0.0053 (8) |
| C8 | 0.0317 (9) | 0.0548 (12) | 0.0379 (10) | 0.0051 (8) | −0.0017 (7) | 0.0021 (9) |
| C9 | 0.0420 (10) | 0.0419 (10) | 0.0411 (10) | 0.0059 (8) | −0.0029 (8) | −0.0026 (8) |
| C10 | 0.0329 (9) | 0.0389 (9) | 0.0347 (9) | 0.0001 (7) | −0.0070 (7) | 0.0016 (8) |
| C11 | 0.0699 (15) | 0.0489 (12) | 0.0536 (13) | 0.0014 (11) | −0.0153 (11) | 0.0036 (10) |
| N1 | 0.0255 (7) | 0.0483 (9) | 0.0344 (8) | 0.0038 (6) | −0.0019 (6) | −0.0017 (7) |
| N2 | 0.0416 (9) | 0.0422 (9) | 0.0398 (8) | −0.0020 (7) | 0.0036 (7) | −0.0154 (7) |
| O1 | 0.0268 (7) | 0.0661 (10) | 0.0599 (9) | 0.0007 (6) | −0.0064 (6) | 0.0112 (7) |
| O2 | 0.0535 (9) | 0.0721 (10) | 0.0508 (9) | −0.0233 (8) | 0.0059 (7) | −0.0212 (8) |
| O3 | 0.0425 (8) | 0.0697 (10) | 0.0441 (8) | −0.0172 (7) | 0.0014 (6) | −0.0150 (7) |
| O4 | 0.0901 (13) | 0.0767 (12) | 0.0462 (9) | 0.0173 (10) | 0.0240 (9) | −0.0119 (8) |
| O5 | 0.0500 (8) | 0.0649 (10) | 0.0499 (8) | 0.0201 (7) | −0.0043 (7) | −0.0172 (8) |
| C1—C6 | 1.392 (2) | C8—C9 | 1.516 (3) |
| C1—N1 | 1.405 (2) | C8—H8A | 0.9700 |
| C1—C2 | 1.406 (2) | C8—H8B | 0.9700 |
| C2—C3 | 1.388 (2) | C9—C10 | 1.494 (3) |
| C2—N2 | 1.469 (2) | C9—H9A | 0.9700 |
| C3—C4 | 1.379 (3) | C9—H9B | 0.9700 |
| C3—H3 | 0.9300 | C10—O2 | 1.219 (2) |
| C4—C5 | 1.388 (3) | C10—O3 | 1.306 (2) |
| C4—C11 | 1.506 (3) | C11—H11A | 0.9600 |
| C5—C6 | 1.380 (3) | C11—H11B | 0.9600 |
| C5—H5 | 0.9300 | C11—H11C | 0.9600 |
| C6—H6 | 0.9300 | N1—H1N | 0.840 (15) |
| C7—O1 | 1.220 (2) | N2—O4 | 1.215 (2) |
| C7—N1 | 1.356 (2) | N2—O5 | 1.216 (2) |
| C7—C8 | 1.510 (2) | O3—H3O | 0.828 (17) |
| C6—C1—N1 | 120.65 (16) | C9—C8—H8B | 109.0 |
| C6—C1—C2 | 116.32 (16) | H8A—C8—H8B | 107.8 |
| N1—C1—C2 | 123.04 (16) | C10—C9—C8 | 114.65 (18) |
| C3—C2—C1 | 121.65 (16) | C10—C9—H9A | 108.6 |
| C3—C2—N2 | 116.31 (15) | C8—C9—H9A | 108.6 |
| C1—C2—N2 | 122.05 (15) | C10—C9—H9B | 108.6 |
| C4—C3—C2 | 121.19 (17) | C8—C9—H9B | 108.6 |
| C4—C3—H3 | 119.4 | H9A—C9—H9B | 107.6 |
| C2—C3—H3 | 119.4 | O2—C10—O3 | 123.11 (18) |
| C3—C4—C5 | 117.44 (17) | O2—C10—C9 | 123.32 (17) |
| C3—C4—C11 | 121.31 (19) | O3—C10—C9 | 113.48 (18) |
| C5—C4—C11 | 121.24 (19) | C4—C11—H11A | 109.5 |
| C6—C5—C4 | 121.87 (18) | C4—C11—H11B | 109.5 |
| C6—C5—H5 | 119.1 | H11A—C11—H11B | 109.5 |
| C4—C5—H5 | 119.1 | C4—C11—H11C | 109.5 |
| C5—C6—C1 | 121.50 (17) | H11A—C11—H11C | 109.5 |
| C5—C6—H6 | 119.3 | H11B—C11—H11C | 109.5 |
| C1—C6—H6 | 119.3 | C7—N1—C1 | 126.29 (15) |
| O1—C7—N1 | 123.78 (16) | C7—N1—H1N | 116.4 (15) |
| O1—C7—C8 | 122.49 (16) | C1—N1—H1N | 116.8 (15) |
| N1—C7—C8 | 113.73 (15) | O4—N2—O5 | 121.64 (17) |
| C7—C8—C9 | 113.01 (16) | O4—N2—C2 | 118.41 (17) |
| C7—C8—H8A | 109.0 | O5—N2—C2 | 119.95 (15) |
| C9—C8—H8A | 109.0 | C10—O3—H3O | 110.5 (18) |
| C7—C8—H8B | 109.0 | ||
| C6—C1—C2—C3 | −2.0 (3) | O1—C7—C8—C9 | 13.1 (3) |
| N1—C1—C2—C3 | 178.40 (17) | N1—C7—C8—C9 | −166.36 (18) |
| C6—C1—C2—N2 | 178.13 (16) | C7—C8—C9—C10 | −79.0 (2) |
| N1—C1—C2—N2 | −1.5 (3) | C8—C9—C10—O2 | −25.8 (3) |
| C1—C2—C3—C4 | 0.7 (3) | C8—C9—C10—O3 | 157.49 (16) |
| N2—C2—C3—C4 | −179.39 (17) | O1—C7—N1—C1 | −5.4 (3) |
| C2—C3—C4—C5 | 1.0 (3) | C8—C7—N1—C1 | 174.13 (18) |
| C2—C3—C4—C11 | −178.18 (19) | C6—C1—N1—C7 | 39.0 (3) |
| C3—C4—C5—C6 | −1.4 (3) | C2—C1—N1—C7 | −141.4 (2) |
| C11—C4—C5—C6 | 177.7 (2) | C3—C2—N2—O4 | −5.4 (3) |
| C4—C5—C6—C1 | 0.1 (3) | C1—C2—N2—O4 | 174.42 (19) |
| N1—C1—C6—C5 | −178.82 (18) | C3—C2—N2—O5 | 173.52 (17) |
| C2—C1—C6—C5 | 1.6 (3) | C1—C2—N2—O5 | −6.6 (3) |
| H··· | ||||
| N1—H1 | 0.84 (2) | 2.11 (2) | 2.648 (2) | 121 (2) |
| N1—H1 | 0.84 (2) | 2.34 (2) | 3.072 (2) | 146 (2) |
| O3—H3 | 0.83 (2) | 1.86 (2) | 2.688 (2) | 176 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1N⋯O5 | 0.84 (2) | 2.11 (2) | 2.648 (2) | 121 (2) |
| N1—H1N⋯O1i | 0.84 (2) | 2.34 (2) | 3.072 (2) | 146 (2) |
| O3—H3O⋯O2ii | 0.83 (2) | 1.86 (2) | 2.688 (2) | 176 (3) |
Symmetry codes: (i) ; (ii) .