Literature DB >> 22412683

N-(4-Methyl-2-nitro-phen-yl)succinamic acid.

U Chaithanya, Sabine Foro, B Thimme Gowda.   

Abstract

In the title compound, C(11)H(12)N(2)O(5), the conformation of the N-H bond in the amide segment is syn to the ortho-nitro group in the benzene ring. The amide C=O and the carboxyl C=O of the acid segment are syn to each other and both are anti to the H atoms on the adjacent -CH(2) groups. Furthermore, the C=O and O-H bonds of the acid group are in syn positions with respect to each other. The dihedral angle between the benzene ring and the amide group is 36.1 (1)°. The amide H atom shows bifurcated intra-molecular hydrogen bonding with an O atom of the ortho-nitro group and an inter-molecular hydrogen bond with the carbonyl O atom of another mol-ecule. In the crystal, the N-H⋯O(C) hydrogen bonds generate a chain running along the [100] direction. Inversion dimers are formed via a pair of O-H⋯O(C) interactions, that form an eight-membered hydrogen-bonded ring involving the carboxyl group.

Entities:  

Year:  2012        PMID: 22412683      PMCID: PMC3297880          DOI: 10.1107/S1600536812007258

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For our studies on the effects of substituents on the structures and other aspects of N-(ar­yl)-amides, see: Gowda et al. (1999 ▶, 2006 ▶); Chaithanya et al. (2012 ▶). For N-(ar­yl)-methane­sulfon­amides, see: Gowda et al. (2007 ▶). For N-chloro­aryl­amides, see: Jyothi & Gowda (2004 ▶). For N-bromo­aryl­sulfonamides, see: Usha & Gowda (2006 ▶).

Experimental

Crystal data

C11H12N2O5 M = 252.23 Triclinic, a = 4.8531 (7) Å b = 11.015 (2) Å c = 11.787 (2) Å α = 69.59 (1)° β = 78.77 (1)° γ = 83.62 (2)° V = 578.59 (17) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.40 × 0.22 × 0.12 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.955, T max = 0.986 3557 measured reflections 2314 independent reflections 1900 reflections with I > 2σ(I) R int = 0.011

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.119 S = 1.05 2314 reflections 170 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812007258/kp2388sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007258/kp2388Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007258/kp2388Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12N2O5Z = 2
Mr = 252.23F(000) = 264
Triclinic, P1Dx = 1.448 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.8531 (7) ÅCell parameters from 1681 reflections
b = 11.015 (2) Åθ = 3.1–27.8°
c = 11.787 (2) ŵ = 0.12 mm1
α = 69.59 (1)°T = 293 K
β = 78.77 (1)°Needle, yellow
γ = 83.62 (2)°0.40 × 0.22 × 0.12 mm
V = 578.59 (17) Å3
Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector2314 independent reflections
Radiation source: fine-focus sealed tube1900 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.011
Rotation method data acquisition using ω and phi scansθmax = 26.4°, θmin = 3.1°
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)h = −5→6
Tmin = 0.955, Tmax = 0.986k = −13→13
3557 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0471P)2 + 0.2987P] where P = (Fo2 + 2Fc2)/3
2314 reflections(Δ/σ)max = 0.006
170 parametersΔρmax = 0.23 e Å3
2 restraintsΔρmin = −0.22 e Å3
Experimental. CrysAlis RED (Oxford Diffraction, 2009) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0723 (3)0.37100 (17)0.38806 (15)0.0344 (4)
C20.2308 (4)0.40404 (17)0.26912 (16)0.0351 (4)
C30.1566 (4)0.51144 (18)0.17381 (17)0.0423 (4)
H30.26500.52990.09600.051*
C4−0.0749 (4)0.59120 (18)0.19244 (18)0.0439 (5)
C5−0.2278 (4)0.56114 (19)0.31041 (19)0.0463 (5)
H5−0.38230.61460.32570.056*
C6−0.1571 (4)0.45416 (19)0.40568 (17)0.0429 (4)
H6−0.26520.43730.48340.052*
C7−0.0488 (4)0.18197 (18)0.57398 (16)0.0385 (4)
C80.0872 (4)0.0644 (2)0.65902 (18)0.0474 (5)
H8A0.17610.09140.71270.057*
H8B0.23300.02680.61060.057*
C9−0.1198 (4)−0.03824 (19)0.73683 (18)0.0459 (5)
H9A−0.2447−0.04710.68550.055*
H9B−0.0163−0.12060.76550.055*
C10−0.2937 (4)−0.01095 (18)0.84541 (16)0.0392 (4)
C11−0.1609 (5)0.7055 (2)0.0885 (2)0.0627 (6)
H11A−0.31260.68280.05930.075*
H11B−0.00370.72910.02280.075*
H11C−0.22110.77740.11690.075*
N10.1378 (3)0.26122 (16)0.48575 (14)0.0402 (4)
H1N0.308 (3)0.237 (2)0.485 (2)0.048*
N20.4831 (3)0.32707 (15)0.23859 (14)0.0422 (4)
O1−0.3032 (3)0.20209 (15)0.58421 (14)0.0599 (5)
O2−0.2182 (3)0.05642 (16)0.89554 (14)0.0591 (4)
O3−0.5284 (3)−0.07162 (16)0.88538 (13)0.0533 (4)
H3O−0.606 (5)−0.063 (3)0.9514 (18)0.064*
O40.5972 (4)0.35547 (18)0.13202 (15)0.0802 (6)
O50.5750 (3)0.23852 (15)0.31947 (14)0.0579 (4)
U11U22U33U12U13U23
C10.0299 (8)0.0388 (9)0.0306 (8)−0.0020 (7)−0.0043 (7)−0.0073 (7)
C20.0333 (9)0.0362 (9)0.0355 (9)−0.0031 (7)−0.0022 (7)−0.0129 (7)
C30.0483 (11)0.0408 (10)0.0327 (9)−0.0069 (8)−0.0023 (8)−0.0070 (8)
C40.0483 (11)0.0377 (10)0.0411 (10)−0.0042 (8)−0.0115 (8)−0.0048 (8)
C50.0402 (10)0.0427 (10)0.0497 (11)0.0075 (8)−0.0062 (9)−0.0114 (9)
C60.0361 (10)0.0485 (11)0.0363 (9)0.0034 (8)0.0006 (8)−0.0096 (8)
C70.0297 (9)0.0478 (10)0.0306 (8)0.0016 (7)−0.0045 (7)−0.0053 (8)
C80.0317 (9)0.0548 (12)0.0379 (10)0.0051 (8)−0.0017 (7)0.0021 (9)
C90.0420 (10)0.0419 (10)0.0411 (10)0.0059 (8)−0.0029 (8)−0.0026 (8)
C100.0329 (9)0.0389 (9)0.0347 (9)0.0001 (7)−0.0070 (7)0.0016 (8)
C110.0699 (15)0.0489 (12)0.0536 (13)0.0014 (11)−0.0153 (11)0.0036 (10)
N10.0255 (7)0.0483 (9)0.0344 (8)0.0038 (6)−0.0019 (6)−0.0017 (7)
N20.0416 (9)0.0422 (9)0.0398 (8)−0.0020 (7)0.0036 (7)−0.0154 (7)
O10.0268 (7)0.0661 (10)0.0599 (9)0.0007 (6)−0.0064 (6)0.0112 (7)
O20.0535 (9)0.0721 (10)0.0508 (9)−0.0233 (8)0.0059 (7)−0.0212 (8)
O30.0425 (8)0.0697 (10)0.0441 (8)−0.0172 (7)0.0014 (6)−0.0150 (7)
O40.0901 (13)0.0767 (12)0.0462 (9)0.0173 (10)0.0240 (9)−0.0119 (8)
O50.0500 (8)0.0649 (10)0.0499 (8)0.0201 (7)−0.0043 (7)−0.0172 (8)
C1—C61.392 (2)C8—C91.516 (3)
C1—N11.405 (2)C8—H8A0.9700
C1—C21.406 (2)C8—H8B0.9700
C2—C31.388 (2)C9—C101.494 (3)
C2—N21.469 (2)C9—H9A0.9700
C3—C41.379 (3)C9—H9B0.9700
C3—H30.9300C10—O21.219 (2)
C4—C51.388 (3)C10—O31.306 (2)
C4—C111.506 (3)C11—H11A0.9600
C5—C61.380 (3)C11—H11B0.9600
C5—H50.9300C11—H11C0.9600
C6—H60.9300N1—H1N0.840 (15)
C7—O11.220 (2)N2—O41.215 (2)
C7—N11.356 (2)N2—O51.216 (2)
C7—C81.510 (2)O3—H3O0.828 (17)
C6—C1—N1120.65 (16)C9—C8—H8B109.0
C6—C1—C2116.32 (16)H8A—C8—H8B107.8
N1—C1—C2123.04 (16)C10—C9—C8114.65 (18)
C3—C2—C1121.65 (16)C10—C9—H9A108.6
C3—C2—N2116.31 (15)C8—C9—H9A108.6
C1—C2—N2122.05 (15)C10—C9—H9B108.6
C4—C3—C2121.19 (17)C8—C9—H9B108.6
C4—C3—H3119.4H9A—C9—H9B107.6
C2—C3—H3119.4O2—C10—O3123.11 (18)
C3—C4—C5117.44 (17)O2—C10—C9123.32 (17)
C3—C4—C11121.31 (19)O3—C10—C9113.48 (18)
C5—C4—C11121.24 (19)C4—C11—H11A109.5
C6—C5—C4121.87 (18)C4—C11—H11B109.5
C6—C5—H5119.1H11A—C11—H11B109.5
C4—C5—H5119.1C4—C11—H11C109.5
C5—C6—C1121.50 (17)H11A—C11—H11C109.5
C5—C6—H6119.3H11B—C11—H11C109.5
C1—C6—H6119.3C7—N1—C1126.29 (15)
O1—C7—N1123.78 (16)C7—N1—H1N116.4 (15)
O1—C7—C8122.49 (16)C1—N1—H1N116.8 (15)
N1—C7—C8113.73 (15)O4—N2—O5121.64 (17)
C7—C8—C9113.01 (16)O4—N2—C2118.41 (17)
C7—C8—H8A109.0O5—N2—C2119.95 (15)
C9—C8—H8A109.0C10—O3—H3O110.5 (18)
C7—C8—H8B109.0
C6—C1—C2—C3−2.0 (3)O1—C7—C8—C913.1 (3)
N1—C1—C2—C3178.40 (17)N1—C7—C8—C9−166.36 (18)
C6—C1—C2—N2178.13 (16)C7—C8—C9—C10−79.0 (2)
N1—C1—C2—N2−1.5 (3)C8—C9—C10—O2−25.8 (3)
C1—C2—C3—C40.7 (3)C8—C9—C10—O3157.49 (16)
N2—C2—C3—C4−179.39 (17)O1—C7—N1—C1−5.4 (3)
C2—C3—C4—C51.0 (3)C8—C7—N1—C1174.13 (18)
C2—C3—C4—C11−178.18 (19)C6—C1—N1—C739.0 (3)
C3—C4—C5—C6−1.4 (3)C2—C1—N1—C7−141.4 (2)
C11—C4—C5—C6177.7 (2)C3—C2—N2—O4−5.4 (3)
C4—C5—C6—C10.1 (3)C1—C2—N2—O4174.42 (19)
N1—C1—C6—C5−178.82 (18)C3—C2—N2—O5173.52 (17)
C2—C1—C6—C51.6 (3)C1—C2—N2—O5−6.6 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O50.84 (2)2.11 (2)2.648 (2)121 (2)
N1—H1N···O1i0.84 (2)2.34 (2)3.072 (2)146 (2)
O3—H3O···O2ii0.83 (2)1.86 (2)2.688 (2)176 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O50.84 (2)2.11 (2)2.648 (2)121 (2)
N1—H1N⋯O1i0.84 (2)2.34 (2)3.072 (2)146 (2)
O3—H3O⋯O2ii0.83 (2)1.86 (2)2.688 (2)176 (3)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(2-Chloro-4-methyl-phen-yl)succinamic acid.

Authors:  U Chaithanya; Sabine Foro; B Thimme Gowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-17

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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