Literature DB >> 22412671

(3E,5E)-3,5-Bis(naphthalen-1-yl-methyl-idene)piperidin-4-one.

Yalda Kia, Hasnah Osman, Vikneswaran Murugaiyah, Suhana Arshad, Ibrahim Abdul Razak.   

Abstract

In the title compound, C(27)H(21)NO, the piperidine ring adopts a chair conformation. The mean plane through the piperidine ring makes dihedral angles of 49.27 (5) and 63.07 (5)° with the naphthalene ring systems. In the crystal, mol-ecules are linked into dimers via pairs of inter-molecular C-H⋯O inter-actions, generating ten-membered R(2) (2)(10) ring motifs. C-H⋯π inter-actions further stabilize the crystal structure.

Entities:  

Year:  2012        PMID: 22412671      PMCID: PMC3297868          DOI: 10.1107/S1600536812006307

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activities of α,β-unsaturated ketones, see: Lee et al. (1971 ▶); Anke et al. (1981 ▶); Khodair et al. (1997 ▶); Murakami et al. (2002 ▶); El-Subbagh et al. (2000 ▶); El-Barbary et al. (1994 ▶); Dimmock et al. (1983 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶). For a related structure, see: Basiri et al. (2011 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For experimental preparation, see: Das et al. (2007 ▶). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C27H21NO M = 375.45 Monoclinic, a = 9.4833 (2) Å b = 10.0838 (2) Å c = 20.3885 (4) Å β = 101.513 (1)° V = 1910.48 (7) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.28 × 0.21 × 0.10 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.979, T max = 0.992 21618 measured reflections 5644 independent reflections 4138 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.125 S = 1.02 5644 reflections 266 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812006307/rz2710sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812006307/rz2710Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812006307/rz2710Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H21NOF(000) = 792
Mr = 375.45Dx = 1.305 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5698 reflections
a = 9.4833 (2) Åθ = 2.7–29.9°
b = 10.0838 (2) ŵ = 0.08 mm1
c = 20.3885 (4) ÅT = 100 K
β = 101.513 (1)°Plate, yellow
V = 1910.48 (7) Å30.28 × 0.21 × 0.10 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer5644 independent reflections
Radiation source: fine-focus sealed tube4138 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.037
φ and ω scansθmax = 30.2°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −13→8
Tmin = 0.979, Tmax = 0.992k = −13→14
21618 measured reflectionsl = −28→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0539P)2 + 0.7137P] where P = (Fo2 + 2Fc2)/3
5644 reflections(Δ/σ)max < 0.001
266 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.19 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.20055 (10)0.98893 (10)0.10917 (5)0.0220 (2)
N1−0.17776 (13)0.77264 (12)0.07711 (6)0.0221 (3)
C1−0.17882 (15)1.32180 (13)0.12377 (7)0.0184 (3)
C2−0.06600 (16)1.34358 (14)0.18022 (7)0.0222 (3)
H2A0.01711.28870.18680.027*
C3−0.07534 (17)1.44260 (15)0.22535 (8)0.0274 (3)
H3A0.00201.45670.26220.033*
C4−0.19864 (18)1.52344 (16)0.21750 (8)0.0310 (4)
H4A−0.20531.59050.24950.037*
C5−0.30899 (17)1.50529 (15)0.16367 (8)0.0274 (3)
H5A−0.39171.56040.15860.033*
C6−0.30191 (15)1.40587 (14)0.11546 (7)0.0209 (3)
C7−0.41645 (16)1.38733 (14)0.05993 (7)0.0233 (3)
H7A−0.49821.44380.05440.028*
C8−0.41112 (16)1.28894 (14)0.01388 (7)0.0234 (3)
H8A−0.48801.2785−0.02350.028*
C9−0.29140 (15)1.20365 (14)0.02233 (7)0.0206 (3)
H9A−0.28901.1357−0.00970.025*
C10−0.17705 (14)1.21611 (13)0.07607 (6)0.0174 (3)
C11−0.05484 (15)1.12471 (13)0.08701 (6)0.0181 (3)
H11A0.03651.16350.10390.022*
C12−0.05458 (14)0.99261 (13)0.07631 (6)0.0168 (3)
C13−0.18459 (14)0.90730 (13)0.04956 (7)0.0188 (3)
H13A−0.27120.95190.05930.023*
H13B−0.19620.90120.00030.023*
C14−0.04589 (15)0.70382 (14)0.07028 (7)0.0217 (3)
H14A−0.04590.69130.02210.026*
H14B−0.04490.61490.09090.026*
C150.08935 (14)0.77746 (13)0.10247 (6)0.0173 (3)
C160.08796 (14)0.92523 (13)0.09686 (6)0.0171 (3)
C170.20833 (15)0.72198 (13)0.13867 (6)0.0185 (3)
H17A0.27980.78110.16130.022*
C180.23999 (14)0.57973 (13)0.14716 (7)0.0178 (3)
C190.21653 (15)0.49547 (14)0.09261 (7)0.0211 (3)
H19A0.17340.52910.04980.025*
C200.25547 (15)0.36044 (14)0.09939 (7)0.0236 (3)
H20A0.23890.30450.06110.028*
C210.31695 (15)0.30915 (14)0.16068 (7)0.0221 (3)
H21A0.34110.21770.16480.027*
C220.34447 (14)0.39198 (14)0.21777 (7)0.0189 (3)
C230.41211 (15)0.34198 (14)0.28155 (7)0.0228 (3)
H23A0.43730.25080.28620.027*
C240.44152 (16)0.42307 (15)0.33632 (7)0.0252 (3)
H24A0.48910.38860.37830.030*
C250.40119 (15)0.55807 (15)0.33047 (7)0.0238 (3)
H25A0.42070.61380.36880.029*
C260.33416 (15)0.60925 (14)0.26995 (7)0.0200 (3)
H26A0.30620.69990.26700.024*
C270.30600 (14)0.52860 (13)0.21164 (7)0.0171 (3)
H1N1−0.1808 (18)0.7776 (18)0.1223 (9)0.030 (5)*
U11U22U33U12U13U23
O10.0211 (5)0.0162 (5)0.0274 (5)0.0004 (4)0.0013 (4)−0.0002 (4)
N10.0224 (6)0.0159 (6)0.0273 (6)0.0011 (5)0.0037 (5)0.0041 (5)
C10.0233 (7)0.0136 (6)0.0194 (6)0.0007 (5)0.0072 (5)0.0015 (5)
C20.0239 (7)0.0189 (7)0.0244 (7)0.0014 (6)0.0064 (5)−0.0019 (5)
C30.0323 (8)0.0254 (8)0.0243 (7)−0.0021 (6)0.0052 (6)−0.0050 (6)
C40.0409 (9)0.0239 (8)0.0301 (8)0.0032 (7)0.0116 (7)−0.0085 (6)
C50.0323 (8)0.0211 (7)0.0309 (8)0.0076 (6)0.0113 (6)−0.0015 (6)
C60.0257 (7)0.0151 (6)0.0236 (7)0.0026 (5)0.0089 (5)0.0023 (5)
C70.0254 (7)0.0195 (7)0.0257 (7)0.0082 (6)0.0071 (6)0.0049 (5)
C80.0245 (7)0.0229 (7)0.0220 (7)0.0048 (6)0.0029 (5)0.0036 (5)
C90.0264 (7)0.0166 (7)0.0191 (6)0.0028 (5)0.0053 (5)0.0008 (5)
C100.0209 (6)0.0128 (6)0.0193 (6)0.0014 (5)0.0059 (5)0.0013 (5)
C110.0203 (6)0.0165 (6)0.0176 (6)0.0019 (5)0.0039 (5)0.0007 (5)
C120.0203 (6)0.0148 (6)0.0151 (6)0.0026 (5)0.0032 (5)0.0014 (4)
C130.0200 (6)0.0135 (6)0.0222 (6)0.0029 (5)0.0024 (5)0.0010 (5)
C140.0229 (7)0.0139 (6)0.0259 (7)0.0020 (5)−0.0010 (5)0.0002 (5)
C150.0205 (6)0.0128 (6)0.0186 (6)0.0016 (5)0.0036 (5)0.0000 (5)
C160.0216 (6)0.0138 (6)0.0155 (6)0.0026 (5)0.0028 (5)−0.0005 (4)
C170.0206 (6)0.0153 (6)0.0190 (6)0.0006 (5)0.0022 (5)−0.0002 (5)
C180.0166 (6)0.0146 (6)0.0217 (6)0.0016 (5)0.0026 (5)0.0004 (5)
C190.0215 (7)0.0186 (7)0.0215 (7)0.0026 (5)0.0004 (5)−0.0006 (5)
C200.0215 (7)0.0184 (7)0.0294 (7)0.0016 (6)0.0013 (6)−0.0070 (5)
C210.0185 (7)0.0137 (6)0.0331 (7)0.0012 (5)0.0025 (5)0.0001 (5)
C220.0146 (6)0.0159 (6)0.0260 (7)0.0003 (5)0.0036 (5)0.0026 (5)
C230.0204 (7)0.0176 (7)0.0301 (7)0.0015 (5)0.0046 (6)0.0078 (5)
C240.0226 (7)0.0287 (8)0.0233 (7)0.0015 (6)0.0023 (5)0.0079 (6)
C250.0236 (7)0.0273 (8)0.0207 (7)−0.0002 (6)0.0049 (5)0.0004 (5)
C260.0210 (7)0.0161 (6)0.0231 (7)0.0017 (5)0.0049 (5)0.0002 (5)
C270.0152 (6)0.0149 (6)0.0211 (6)0.0001 (5)0.0032 (5)0.0017 (5)
O1—C161.2283 (16)C13—H13A0.9900
N1—C141.4610 (18)C13—H13B0.9900
N1—C131.4660 (17)C14—C151.5136 (19)
N1—H1N10.928 (18)C14—H14A0.9900
C1—C21.4235 (19)C14—H14B0.9900
C1—C61.4251 (19)C15—C171.3411 (18)
C1—C101.4451 (18)C15—C161.4943 (18)
C2—C31.372 (2)C17—C181.4686 (18)
C2—H2A0.9500C17—H17A0.9500
C3—C41.408 (2)C18—C191.3819 (18)
C3—H3A0.9500C18—C271.4344 (18)
C4—C51.369 (2)C19—C201.410 (2)
C4—H4A0.9500C19—H19A0.9500
C5—C61.415 (2)C20—C211.371 (2)
C5—H5A0.9500C20—H20A0.9500
C6—C71.416 (2)C21—C221.414 (2)
C7—C81.374 (2)C21—H21A0.9500
C7—H7A0.9500C22—C231.4226 (19)
C8—C91.407 (2)C22—C271.4242 (18)
C8—H8A0.9500C23—C241.367 (2)
C9—C101.3848 (19)C23—H23A0.9500
C9—H9A0.9500C24—C251.413 (2)
C10—C111.4626 (18)C24—H24A0.9500
C11—C121.3499 (18)C25—C261.3711 (19)
C11—H11A0.9500C25—H25A0.9500
C12—C161.4961 (18)C26—C271.4210 (19)
C12—C131.5130 (18)C26—H26A0.9500
C14—N1—C13112.12 (11)N1—C14—C15113.13 (11)
C14—N1—H1N1108.5 (11)N1—C14—H14A109.0
C13—N1—H1N1108.8 (11)C15—C14—H14A109.0
C2—C1—C6118.03 (12)N1—C14—H14B109.0
C2—C1—C10123.38 (12)C15—C14—H14B109.0
C6—C1—C10118.55 (12)H14A—C14—H14B107.8
C3—C2—C1121.04 (14)C17—C15—C16116.85 (12)
C3—C2—H2A119.5C17—C15—C14125.52 (12)
C1—C2—H2A119.5C16—C15—C14117.53 (11)
C2—C3—C4120.54 (14)O1—C16—C15120.79 (12)
C2—C3—H3A119.7O1—C16—C12121.31 (12)
C4—C3—H3A119.7C15—C16—C12117.90 (12)
C5—C4—C3119.88 (14)C15—C17—C18127.02 (12)
C5—C4—H4A120.1C15—C17—H17A116.5
C3—C4—H4A120.1C18—C17—H17A116.5
C4—C5—C6121.12 (14)C19—C18—C27119.17 (12)
C4—C5—H5A119.4C19—C18—C17120.63 (12)
C6—C5—H5A119.4C27—C18—C17120.04 (12)
C5—C6—C7120.91 (13)C18—C19—C20121.18 (13)
C5—C6—C1119.36 (13)C18—C19—H19A119.4
C7—C6—C1119.72 (13)C20—C19—H19A119.4
C8—C7—C6120.98 (13)C21—C20—C19120.60 (13)
C8—C7—H7A119.5C21—C20—H20A119.7
C6—C7—H7A119.5C19—C20—H20A119.7
C7—C8—C9119.77 (13)C20—C21—C22120.18 (13)
C7—C8—H8A120.1C20—C21—H21A119.9
C9—C8—H8A120.1C22—C21—H21A119.9
C10—C9—C8121.78 (13)C21—C22—C23121.24 (13)
C10—C9—H9A119.1C21—C22—C27119.81 (12)
C8—C9—H9A119.1C23—C22—C27118.95 (13)
C9—C10—C1119.13 (12)C24—C23—C22121.06 (13)
C9—C10—C11122.35 (12)C24—C23—H23A119.5
C1—C10—C11118.51 (12)C22—C23—H23A119.5
C12—C11—C10128.62 (13)C23—C24—C25119.99 (13)
C12—C11—H11A115.7C23—C24—H24A120.0
C10—C11—H11A115.7C25—C24—H24A120.0
C11—C12—C16115.70 (12)C26—C25—C24120.51 (14)
C11—C12—C13126.27 (12)C26—C25—H25A119.7
C16—C12—C13117.94 (11)C24—C25—H25A119.7
N1—C13—C12114.71 (11)C25—C26—C27120.90 (13)
N1—C13—H13A108.6C25—C26—H26A119.6
C12—C13—H13A108.6C27—C26—H26A119.6
N1—C13—H13B108.6C26—C27—C22118.56 (12)
C12—C13—H13B108.6C26—C27—C18122.40 (12)
H13A—C13—H13B107.6C22—C27—C18119.04 (12)
C6—C1—C2—C30.0 (2)C14—C15—C16—O1−164.86 (12)
C10—C1—C2—C3−177.67 (14)C17—C15—C16—C12−161.14 (12)
C1—C2—C3—C41.3 (2)C14—C15—C16—C1215.56 (17)
C2—C3—C4—C5−1.4 (2)C11—C12—C16—O1−14.65 (19)
C3—C4—C5—C60.2 (2)C13—C12—C16—O1168.69 (12)
C4—C5—C6—C7179.89 (15)C11—C12—C16—C15164.93 (12)
C4—C5—C6—C11.1 (2)C13—C12—C16—C15−11.73 (17)
C2—C1—C6—C5−1.2 (2)C16—C15—C17—C18−174.83 (13)
C10—C1—C6—C5176.59 (13)C14—C15—C17—C188.8 (2)
C2—C1—C6—C7−179.99 (13)C15—C17—C18—C1946.2 (2)
C10—C1—C6—C7−2.2 (2)C15—C17—C18—C27−138.58 (14)
C5—C6—C7—C8−178.55 (14)C27—C18—C19—C200.4 (2)
C1—C6—C7—C80.2 (2)C17—C18—C19—C20175.69 (13)
C6—C7—C8—C91.0 (2)C18—C19—C20—C210.5 (2)
C7—C8—C9—C10−0.3 (2)C19—C20—C21—C22−1.2 (2)
C8—C9—C10—C1−1.7 (2)C20—C21—C22—C23−178.09 (13)
C8—C9—C10—C11177.34 (13)C20—C21—C22—C271.0 (2)
C2—C1—C10—C9−179.42 (13)C21—C22—C23—C24178.48 (14)
C6—C1—C10—C92.94 (19)C27—C22—C23—C24−0.6 (2)
C2—C1—C10—C111.5 (2)C22—C23—C24—C251.7 (2)
C6—C1—C10—C11−176.17 (12)C23—C24—C25—C26−0.8 (2)
C9—C10—C11—C12−37.3 (2)C24—C25—C26—C27−1.1 (2)
C1—C10—C11—C12141.76 (14)C25—C26—C27—C222.1 (2)
C10—C11—C12—C16−176.09 (12)C25—C26—C27—C18−178.11 (13)
C10—C11—C12—C130.3 (2)C21—C22—C27—C26179.62 (13)
C14—N1—C13—C12−53.18 (15)C23—C22—C27—C26−1.27 (19)
C11—C12—C13—N1−145.86 (13)C21—C22—C27—C18−0.15 (19)
C16—C12—C13—N130.42 (17)C23—C22—C27—C18178.96 (12)
C13—N1—C14—C1556.73 (15)C19—C18—C27—C26179.70 (13)
N1—C14—C15—C17138.38 (14)C17—C18—C27—C264.4 (2)
N1—C14—C15—C16−38.00 (17)C19—C18—C27—C22−0.54 (19)
C17—C15—C16—O118.44 (19)C17—C18—C27—C22−175.85 (12)
D—H···AD—HH···AD···AD—H···A
C13—H13B···O1i0.992.483.3758 (17)150
C26—H26A···Cg1ii0.952.923.7532 (15)147
C25—H25A···Cg2ii0.952.703.4923 (16)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C1–C6 and C1/C6–C10 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13B⋯O1i0.992.483.3758 (17)150
C26—H26ACg1ii0.952.923.7532 (15)147
C25—H25ACg2ii0.952.703.4923 (16)141

Symmetry codes: (i) ; (ii) .

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6.  Zerumbone, a Southeast Asian ginger sesquiterpene, markedly suppresses free radical generation, proinflammatory protein production, and cancer cell proliferation accompanied by apoptosis: the alpha,beta-unsaturated carbonyl group is a prerequisite.

Authors:  Akira Murakami; Daisuke Takahashi; Takashi Kinoshita; Koichi Koshimizu; Ha Won Kim; Akira Yoshihiro; Yoshimasa Nakamura; Suratwadee Jiwajinda; Junji Terao; Hajime Ohigashi
Journal:  Carcinogenesis       Date:  2002-05       Impact factor: 4.944

7.  Antibiotics from basidiomycetes. XIII. The alliacols A and B from Marasmius alliaceus (Jacq. ex Fr.) Fr.

Authors:  T Anke; W H Watson; B M Giannetti; W Steglich
Journal:  J Antibiot (Tokyo)       Date:  1981-10       Impact factor: 2.649

8.  S-glucosylated hydantoins as new antiviral agents.

Authors:  A A el-Barbary; A I Khodair; E B Pedersen; C Nielsen
Journal:  J Med Chem       Date:  1994-01-07       Impact factor: 7.446

9.  (3E,5E)-1-Acryloyl-3,5-bis-(2-chloro-benzyl-idene)piperidin-4-one.

Authors:  Alireza Basiri; Vikneswaran Murugaiyah; Hasnah Osman; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total

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