Literature DB >> 22412662

(E)-1-(2,5-Dichloro-thio-phen-3-yl)ethan-one [8-(trifluoro-meth-yl)quinolin-4-yl]hydrazone.

A S Dayananda, H S Yathirajan, William T A Harrison, Alexandra M Z Slawin.   

Abstract

In the title compound, C(16)H(10)Cl(2)F(3)N(3)S, the dihedral angle between the n class="Chemical">quinoline and thio-phene ring systems is 4.94 (10)°. The NH group of the hydrazone moiety does not form a hydrogen bond, due to a steric crowding. In the crystal, the thio-phene ring takes part in weak π-π stacking inter-actions with the pyridine ring [centroid-to-centroid separation = 3.7553 (19) Å and inter-planar angle = 5.48 (12)°] and the benzene ring [3.7927 (19) Å and 4.58 (12)°]. Together, these lead to [100] stacks of mol-ecules in an alternating head-to-tail arrangement, with two π-π stacking contacts between each adjacent pair.

Entities:  

Year:  2012        PMID: 22412662      PMCID: PMC3297859          DOI: 10.1107/S1600536812005673

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures derived from 4-hydrazinyl-8-(trifluoro­meth­yl)quinoline and background to n class="Chemical">Schiff bases, see; Jasinski et al. (2010 ▶); Dutkiewicz et al. (2010 ▶).

Experimental

Crystal data

C16H10Cl2F3N3S M = 404.23 Monoclinic, a = 7.687 (2) Å b = 14.392 (5) Å c = 14.360 (5) Å β = 95.053 (9)° V = 1582.5 (9) Å3 Z = 4 Mo Kα radiation μ = 0.58 mm−1 T = 73 K 0.10 × 0.10 × 0.10 mm

Data collection

Rigaku Mercury CCD diffractometer 9805 measured reflections 2897 independent reflections 2369 reflections with I > 2σ(I) R int = 0.082

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.128 S = 1.06 2897 reflections 231 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.37 e Å−3 Data collection: CrystalClear (Rigaku, 2009 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812005673/kp2384sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005673/kp2384Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812005673/kp2384Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H10Cl2F3N3SF(000) = 816
Mr = 404.23Dx = 1.697 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4944 reflections
a = 7.687 (2) Åθ = 2.0–28.5°
b = 14.392 (5) ŵ = 0.58 mm1
c = 14.360 (5) ÅT = 73 K
β = 95.053 (9)°Prism, colourless
V = 1582.5 (9) Å30.10 × 0.10 × 0.10 mm
Z = 4
Rigaku Mercury CCD diffractometer2369 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.082
Graphite monochromatorθmax = 25.4°, θmin = 2.0°
ω scansh = −8→9
9805 measured reflectionsk = −17→13
2897 independent reflectionsl = −17→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.128w = 1/[σ2(Fo2) + (0.0544P)2 + 0.0123P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2897 reflectionsΔρmax = 0.35 e Å3
231 parametersΔρmin = −0.37 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008)
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4410 (3)0.25700 (19)0.39915 (18)0.0193 (6)
C20.5208 (3)0.16942 (18)0.42084 (19)0.0196 (6)
C30.5718 (3)0.1444 (2)0.51114 (19)0.0233 (6)
H30.62440.08550.52410.028*
C40.5458 (3)0.20637 (19)0.58497 (19)0.0222 (6)
H40.58400.18960.64740.027*
C50.4662 (3)0.29017 (19)0.56742 (18)0.0212 (6)
H50.44750.33040.61800.025*
C60.4113 (3)0.31781 (19)0.47515 (19)0.0184 (6)
C70.3276 (3)0.40483 (18)0.45162 (18)0.0185 (6)
C80.2886 (3)0.4263 (2)0.35855 (19)0.0227 (6)
H80.23670.48420.34070.027*
C90.3269 (3)0.3612 (2)0.29090 (19)0.0213 (6)
H90.29850.37790.22740.026*
C100.1600 (3)0.59983 (19)0.56281 (18)0.0187 (6)
C110.1918 (3)0.5794 (2)0.66590 (19)0.0241 (6)
H11A0.16220.51450.67750.036*
H11B0.11880.62030.70070.036*
H11C0.31510.59020.68640.036*
C120.0773 (3)0.68922 (19)0.53327 (18)0.0181 (6)
C130.0493 (3)0.76274 (19)0.59770 (19)0.0210 (6)
H130.07600.75730.66330.025*
C14−0.0183 (3)0.83985 (18)0.55647 (19)0.0203 (6)
C150.0230 (3)0.71698 (18)0.44394 (18)0.0201 (6)
C160.5511 (3)0.1035 (2)0.3424 (2)0.0260 (7)
N10.3989 (3)0.27860 (16)0.30701 (15)0.0210 (5)
N20.2884 (3)0.46492 (16)0.52193 (17)0.0218 (5)
H10.310 (3)0.449 (2)0.578 (2)0.026*
N30.2058 (3)0.54653 (15)0.49702 (15)0.0205 (5)
F10.65951 (18)0.13668 (11)0.28208 (10)0.0273 (4)
F20.6221 (2)0.02239 (12)0.37478 (12)0.0380 (5)
F30.40389 (19)0.07936 (12)0.28996 (12)0.0349 (5)
S1−0.05583 (8)0.82904 (5)0.43743 (5)0.0231 (2)
Cl10.01844 (9)0.65772 (5)0.34012 (5)0.0280 (2)
Cl2−0.06338 (9)0.94308 (5)0.60984 (5)0.0289 (2)
U11U22U33U12U13U23
C10.0184 (12)0.0234 (16)0.0161 (14)−0.0038 (11)0.0015 (10)−0.0023 (12)
C20.0190 (12)0.0205 (16)0.0196 (16)−0.0017 (11)0.0034 (11)−0.0028 (12)
C30.0211 (13)0.0273 (17)0.0218 (16)−0.0003 (11)0.0026 (11)0.0042 (13)
C40.0231 (13)0.0282 (18)0.0151 (15)0.0004 (12)0.0000 (11)0.0022 (12)
C50.0220 (13)0.0256 (17)0.0156 (15)−0.0015 (12)0.0000 (11)−0.0028 (12)
C60.0174 (13)0.0203 (16)0.0173 (15)−0.0031 (11)0.0007 (11)−0.0022 (11)
C70.0165 (12)0.0216 (16)0.0173 (15)−0.0027 (11)0.0017 (10)−0.0038 (11)
C80.0237 (13)0.0241 (17)0.0199 (16)0.0004 (12)0.0004 (11)0.0024 (12)
C90.0233 (14)0.0282 (17)0.0118 (14)−0.0020 (12)−0.0017 (11)0.0002 (12)
C100.0151 (12)0.0232 (16)0.0174 (15)−0.0018 (11)0.0000 (10)0.0002 (12)
C110.0275 (14)0.0244 (17)0.0202 (16)0.0045 (12)0.0008 (11)−0.0006 (12)
C120.0172 (12)0.0201 (15)0.0166 (15)−0.0036 (11)0.0002 (10)0.0001 (11)
C130.0239 (13)0.0220 (16)0.0170 (15)−0.0014 (11)0.0013 (11)−0.0005 (12)
C140.0249 (14)0.0184 (16)0.0178 (15)−0.0001 (11)0.0025 (11)−0.0007 (11)
C150.0241 (13)0.0205 (16)0.0158 (15)−0.0029 (11)0.0019 (11)−0.0034 (12)
C160.0266 (14)0.0247 (18)0.0271 (17)−0.0027 (13)0.0049 (12)−0.0022 (13)
N10.0237 (11)0.0243 (14)0.0148 (12)−0.0025 (10)0.0010 (9)0.0000 (10)
N20.0274 (11)0.0222 (14)0.0154 (12)0.0021 (10)−0.0008 (10)0.0006 (11)
N30.0238 (11)0.0186 (13)0.0185 (13)0.0020 (9)−0.0007 (9)−0.0003 (10)
F10.0267 (8)0.0366 (11)0.0194 (9)−0.0026 (7)0.0063 (7)−0.0057 (7)
F20.0598 (11)0.0226 (10)0.0330 (11)0.0107 (8)0.0116 (9)−0.0022 (8)
F30.0309 (9)0.0410 (12)0.0332 (10)−0.0128 (7)0.0056 (7)−0.0185 (8)
S10.0268 (4)0.0227 (5)0.0193 (4)0.0011 (3)−0.0002 (3)0.0026 (3)
Cl10.0410 (4)0.0286 (5)0.0140 (4)0.0020 (3)−0.0001 (3)−0.0011 (3)
Cl20.0384 (4)0.0216 (5)0.0276 (5)0.0048 (3)0.0070 (3)−0.0021 (3)
C1—N11.370 (3)C10—C121.481 (4)
C1—C21.424 (4)C10—C111.508 (4)
C1—C61.433 (4)C11—H11A0.9800
C2—C31.369 (4)C11—H11B0.9800
C2—C161.507 (4)C11—H11C0.9800
C3—C41.413 (4)C12—C151.373 (4)
C3—H30.9500C12—C131.434 (4)
C4—C51.366 (4)C13—C141.341 (4)
C4—H40.9500C13—H130.9500
C5—C61.412 (4)C14—S11.715 (3)
C5—H50.9500C14—Cl21.721 (3)
C6—C71.435 (4)C15—Cl11.715 (3)
C7—C81.379 (4)C15—S11.722 (3)
C7—N21.383 (3)C16—F11.342 (3)
C8—C91.400 (4)C16—F31.349 (3)
C8—H80.9500C16—F21.353 (3)
C9—N11.323 (3)N2—N31.368 (3)
C9—H90.9500N2—H10.85 (3)
C10—N31.290 (3)
N1—C1—C2118.2 (2)C10—C11—H11A109.5
N1—C1—C6123.9 (3)C10—C11—H11B109.5
C2—C1—C6117.9 (2)H11A—C11—H11B109.5
C3—C2—C1121.5 (2)C10—C11—H11C109.5
C3—C2—C16119.5 (3)H11A—C11—H11C109.5
C1—C2—C16119.1 (2)H11B—C11—H11C109.5
C2—C3—C4119.8 (3)C15—C12—C13109.7 (2)
C2—C3—H3120.1C15—C12—C10127.5 (2)
C4—C3—H3120.1C13—C12—C10122.8 (2)
C5—C4—C3120.6 (3)C14—C13—C12113.6 (2)
C5—C4—H4119.7C14—C13—H13123.2
C3—C4—H4119.7C12—C13—H13123.2
C4—C5—C6120.9 (2)C13—C14—S1112.9 (2)
C4—C5—H5119.5C13—C14—Cl2127.1 (2)
C6—C5—H5119.5S1—C14—Cl2119.95 (16)
C5—C6—C1119.2 (3)C12—C15—Cl1130.4 (2)
C5—C6—C7123.9 (2)C12—C15—S1113.6 (2)
C1—C6—C7116.9 (2)Cl1—C15—S1115.99 (15)
C8—C7—N2121.7 (3)F1—C16—F3105.6 (2)
C8—C7—C6118.6 (2)F1—C16—F2105.9 (2)
N2—C7—C6119.7 (2)F3—C16—F2105.3 (2)
C7—C8—C9118.8 (3)F1—C16—C2113.8 (2)
C7—C8—H8120.6F3—C16—C2113.7 (2)
C9—C8—H8120.6F2—C16—C2111.8 (2)
N1—C9—C8126.2 (3)C9—N1—C1115.6 (2)
N1—C9—H9116.9N3—N2—C7118.2 (2)
C8—C9—H9116.9N3—N2—H1122.0 (19)
N3—C10—C12116.4 (2)C7—N2—H1119.7 (19)
N3—C10—C11124.9 (2)C10—N3—N2118.0 (2)
C12—C10—C11118.6 (2)C14—S1—C1590.19 (12)
N1—C1—C2—C3177.8 (2)C10—C12—C13—C14176.4 (2)
C6—C1—C2—C3−1.5 (3)C12—C13—C14—S10.8 (3)
N1—C1—C2—C16−1.6 (3)C12—C13—C14—Cl2−177.83 (18)
C6—C1—C2—C16179.1 (2)C13—C12—C15—Cl1−177.8 (2)
C1—C2—C3—C4−0.2 (4)C10—C12—C15—Cl14.7 (4)
C16—C2—C3—C4179.2 (2)C13—C12—C15—S11.1 (3)
C2—C3—C4—C51.7 (4)C10—C12—C15—S1−176.42 (19)
C3—C4—C5—C6−1.3 (4)C3—C2—C16—F1−117.2 (3)
C4—C5—C6—C1−0.4 (4)C1—C2—C16—F162.2 (3)
C4—C5—C6—C7−179.8 (2)C3—C2—C16—F3121.8 (3)
N1—C1—C6—C5−177.4 (2)C1—C2—C16—F3−58.8 (3)
C2—C1—C6—C51.8 (3)C3—C2—C16—F22.7 (3)
N1—C1—C6—C71.9 (3)C1—C2—C16—F2−177.8 (2)
C2—C1—C6—C7−178.8 (2)C8—C9—N1—C1−1.0 (4)
C5—C6—C7—C8176.4 (2)C2—C1—N1—C9−179.3 (2)
C1—C6—C7—C8−2.9 (3)C6—C1—N1—C90.0 (3)
C5—C6—C7—N2−3.4 (4)C8—C7—N2—N31.3 (3)
C1—C6—C7—N2177.2 (2)C6—C7—N2—N3−178.8 (2)
N2—C7—C8—C9−178.1 (2)C12—C10—N3—N2177.7 (2)
C6—C7—C8—C92.1 (3)C11—C10—N3—N20.5 (4)
C7—C8—C9—N1−0.1 (4)C7—N2—N3—C10175.9 (2)
N3—C10—C12—C159.2 (4)C13—C14—S1—C15−0.2 (2)
C11—C10—C12—C15−173.4 (2)Cl2—C14—S1—C15178.60 (17)
N3—C10—C12—C13−168.0 (2)C12—C15—S1—C14−0.6 (2)
C11—C10—C12—C139.4 (3)Cl1—C15—S1—C14178.47 (16)
C15—C12—C13—C14−1.2 (3)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-1-(4-Methyl-phen-yl)ethanone [8-(trifluoro-meth-yl)quinolin-4-yl]hydrazone.

Authors:  Grzegorz Dutkiewicz; Anil N Mayekar; H S Yathirajan; B Narayana; Maciej Kubicki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-20
  2 in total

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