| Literature DB >> 22412656 |
Abstract
The structure of the title compound, C(6)H(7)N(3)O(2), is of inter-est with respect to radiopharmacueticals. The crystal packing is characterized by N-H⋯O and O-H⋯N hydrogen bonds, which form a three-dimensional network. The molecule is planar except for one of the amine H atoms.Entities:
Year: 2012 PMID: 22412656 PMCID: PMC3297853 DOI: 10.1107/S160053681200637X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H7N3O2 | |
| Monoclinic, | Cu |
| Hall symbol: -P 2ybc | µ = 1.01 mm−1 |
| Particle morphology: Fine powder | |
| pale brown | |
| β = 91.7805 (11)° | flat sheet, 8 × 8 mm |
| Specimen preparation: Prepared at 298 K and 101.3 kPa | |
| Stoe STADI P diffractometer | Scan method: step |
| Radiation source: sealed X-ray tube | Absorption correction: for a cylinder mounted on the φ axis [Flat-plate transmission absorption correction ( |
| Curved Ge(111) monochromator | |
| Specimen mounting: powder loaded between two Mylar foils | 2θmin = 9.969°, 2θmax = 84.949°, 2θstep = 0.02° |
| Data collection mode: transmission |
| Least-squares matrix: full | 146 parameters |
| 26 restraints | |
| Primary atom site location: structure-invariant direct methods | |
| Secondary atom site location: difference Fourier map | |
| Hydrogen site location: difference Fourier map | |
| χ2 = 2.016 | Only H-atom coordinates refined |
| 4250 data points | (Δ/σ)max = 0.03 |
| Excluded region(s): The use of the excluded region from 85 to 95° (2θ) leads to better molecular geometry. | Background function: Shifted Chebyshev function of 1st kind (GSAS Background function number 1) with 15 terms 1: 1800.66 2: -1847.80 3: 941.880 4: -249.680 5: 12.6164 6: 58.5368 7: -22.4573 8: -39.9081 9: 32.2315 10: 0.665645 11: -20.8095 12: 16.0647 13: -6.68008 14: -5.95330 15: 5.95798 |
| Profile function: GSAS CW profile function number 4 with 21 terms, i.e.,
pseudovoigt profile coefficients as parameterized in (Thompson | Preferred orientation correction: spherical hamonics function |
| Experimental. The sample was ground lightly in a mortar, loaded between two Mylar foils and fixed in the sample holder with a mask of 8.0 mm internal diameter. |
| C1 | 0.0949 (15) | 0.0911 (6) | 0.7824 (15) | 0.025 (3)* | |
| C2 | 0.3019 (11) | 0.0838 (5) | 0.8434 (12) | 0.024 (3)* | |
| C3 | 0.4127 (11) | 0.1653 (6) | 0.8763 (12) | 0.035 (4)* | |
| C4 | 0.3286 (12) | 0.2568 (6) | 0.8428 (14) | 0.018 (3)* | |
| C5 | 0.0146 (12) | 0.1829 (7) | 0.7521 (12) | 0.039 (5)* | |
| C6 | −0.035 (2) | 0.0069 (9) | 0.7503 (17) | 0.047 (4)* | |
| N1 | 0.1331 (11) | 0.2628 (5) | 0.7828 (11) | 0.026 (3)* | |
| N2 | 0.4164 (12) | 0.3424 (4) | 0.8716 (12) | 0.034 (3)* | |
| N3 | 0.6139 (10) | 0.3455 (6) | 0.9453 (13) | 0.050 (3)* | |
| O1 | −0.2097 (8) | 0.0126 (4) | 0.7110 (10) | 0.032 (3)* | |
| O2 | 0.0600 (8) | −0.0758 (5) | 0.7824 (11) | 0.043 (3)* | |
| H2 | 0.362 (2) | 0.0198 (11) | 0.869 (3) | 0.029 (4)* | |
| H3 | 0.554 (3) | 0.1597 (10) | 0.917 (3) | 0.042 (4)* | |
| H5 | −0.127 (3) | 0.1905 (12) | 0.707 (3) | 0.047 (5)* | |
| H1N2 | 0.364 (4) | 0.3948 (12) | 0.816 (6) | 0.052 (4)* | |
| H1N3 | 0.696 (2) | 0.325 (5) | 0.861 (5) | 0.075 (5)* | |
| H2N3 | 0.644 (4) | 0.4040 (17) | 0.977 (10) | 0.075 (5)* | |
| H1O2 | −0.018 (3) | −0.1211 (10) | 0.768 (4) | 0.065 (4)* |
| C1—C2 | 1.444 (10) | C6—C1 | 1.471 (15) |
| C2—C3 | 1.369 (9) | C6—O1 | 1.198 (12) |
| C2—H2 | 0.990 (14) | C6—O2 | 1.328 (11) |
| C3—C4 | 1.407 (10) | N2—C4 | 1.339 (7) |
| C3—H3 | 0.981 (14) | N2—N3 | 1.409 (7) |
| C4—N1 | 1.367 (9) | N2—H1N2 | 0.89 (3) |
| N1—C5 | 1.378 (9) | N3—H1N3 | 0.87 (3) |
| C5—C1 | 1.397 (12) | N3—H2N3 | 0.87 (3) |
| C5—H5 | 0.997 (14) | O2—H1O2 | 0.824 (14) |
| C2—C1—C5 | 118.2 (7) | C1—C5—H5 | 120.3 (13) |
| C2—C1—C6 | 123.3 (9) | N1—C5—H5 | 120.2 (13) |
| C5—C1—C6 | 118.6 (9) | C1—C6—O1 | 123.5 (12) |
| C1—C2—C3 | 120.3 (6) | C1—C6—O2 | 112.5 (10) |
| C1—C2—H2 | 119.9 (6) | O1—C6—O2 | 123.8 (13) |
| C3—C2—H2 | 119.7 (6) | C4—N1—C5 | 122.8 (8) |
| C2—C3—C4 | 120.3 (7) | C4—N2—N3 | 119.2 (7) |
| C2—C3—H3 | 119.8 (6) | C4—N2—H1N2 | 119 (2) |
| C4—C3—H3 | 119.8 (6) | N3—N2—H1N2 | 119.4 (18) |
| C3—C4—N1 | 118.9 (7) | N2—N3—H1N3 | 110 (2) |
| C3—C4—N2 | 127.1 (8) | N2—N3—H2N3 | 110 (2) |
| N1—C4—N2 | 113.9 (8) | H1N3—N3—H2N3 | 110 (5) |
| C1—C5—N1 | 119.5 (6) | C6—O2—H1O2 | 109.9 (15) |
| C4—N1—C5—C1 | −0.1 (13) | C5—C1—C2—C3 | 2.2 (14) |
| C5—N1—C4—N2 | −177.5 (8) | C2—C1—C6—O2 | −0.5 (15) |
| C5—N1—C4—C3 | −0.5 (13) | C5—C1—C6—O1 | −4.9 (17) |
| N3—N2—C4—N1 | 175.9 (8) | C2—C1—C6—O1 | 175.2 (10) |
| N3—N2—C4—C3 | −0.8 (15) | C5—C1—C6—O2 | 179.4 (9) |
| C2—C1—C5—N1 | −0.7 (13) | C1—C2—C3—C4 | −2.9 (13) |
| C6—C1—C5—N1 | 179.5 (9) | C2—C3—C4—N2 | 178.6 (9) |
| C6—C1—C2—C3 | −178.0 (10) | C2—C3—C4—N1 | 2.1 (13) |
| H··· | ||||
| N2—H1 | 0.89 (3) | 1.94 (2) | 2.792 (8) | 158 (4) |
| N3—H1 | 0.87 (3) | 2.39 (4) | 2.967 (10) | 124 (6) |
| N3—H2 | 0.87 (3) | 2.23 (6) | 2.950 (11) | 141 (5) |
| O2—H1 | 0.822 (15) | 1.818 (16) | 2.622 (10) | 165.2 (18) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1N2⋯O1i | 0.89 (3) | 1.94 (2) | 2.792 (8) | 158 (4) |
| N3—H1N3⋯O2ii | 0.87 (3) | 2.39 (4) | 2.967 (10) | 124 (6) |
| N3—H2N3⋯O1iii | 0.87 (3) | 2.23 (6) | 2.950 (11) | 141 (5) |
| O2—H1O2⋯N1iv | 0.822 (15) | 1.818 (16) | 2.622 (10) | 165.2 (18) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .