Literature DB >> 22412651

N-Benzyl-isatin.

M Schutte, H G Visser, A Roodt, H Braband.   

Abstract

In the title compound, C(15)H(11)NO(2), two C-H⋯O hydrogen bonds are observed in the crystal structure, as well as π-π stacking with a centroid-centroid distance of 3.623 (2) Å. The planarity of the two ring systems is illustrated by very small deviations of all the atoms from these planes [largest deviations = 0.003 (3) and 0.010 (3) Å for the phenyl and fused-benzene rings, respectively]. The dihedral angle between these two planes is 77.65 (9)°.

Entities:  

Year:  2012        PMID: 22412651      PMCID: PMC3297848          DOI: 10.1107/S1600536812006575

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature regarding the biological properties of N-benzyl­isatin, see: Palmer et al. (1987 ▶); Goldschmidt & Llewellyn (1950 ▶); Wei et al. (2004 ▶); Frolova et al. (1988 ▶); Akkurt et al. (2006 ▶). For background regarding the functionalization of isatin, see: Schutte (2011 ▶). For a similar structure, see: Akkurt et al. (2006 ▶).

Experimental

Crystal data

C15H11NO2 M = 237.25 Monoclinic, a = 6.5766 (5) Å b = 4.8877 (4) Å c = 18.2211 (13) Å β = 98.316 (7)° V = 579.55 (8) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 183 K 0.34 × 0.07 × 0.02 mm

Data collection

Oxford Xcalibur Ruby CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007 ▶) T min = 0.881, T max = 0.921 5347 measured reflections 2095 independent reflections 1264 reflections with I > 2σ(I) R int = 0.068

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.128 S = 0.99 2095 reflections 163 parameters 1 restraint H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812006575/ez2282sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812006575/ez2282Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812006575/ez2282Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H11NO2F(000) = 248
Mr = 237.25Dx = 1.36 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 6.5766 (5) ÅCell parameters from 972 reflections
b = 4.8877 (4) Åθ = 3.1–29.2°
c = 18.2211 (13) ŵ = 0.09 mm1
β = 98.316 (7)°T = 183 K
V = 579.55 (8) Å3Plate, orange
Z = 20.34 × 0.07 × 0.02 mm
Oxford Xcalibur Ruby CCD diffractometer2095 independent reflections
Graphite monochromator1264 reflections with I > 2σ(I)
Detector resolution: 10.4498 pixels mm-1Rint = 0.068
ο oscillation scanθmax = 25.3°, θmin = 3.1°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007)h = −7→7
Tmin = 0.881, Tmax = 0.921k = −5→5
5347 measured reflectionsl = −21→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0406P)2] where P = (Fo2 + 2Fc2)/3
2095 reflections(Δ/σ)max = 0.001
163 parametersΔρmax = 0.15 e Å3
1 restraintΔρmin = −0.19 e Å3
Experimental. CrysAlis Pro (Oxford Diffraction Ltd, 2007) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C80.7610 (6)−0.1172 (9)0.7201 (2)0.0419 (11)
C70.6174 (6)0.0052 (8)0.6537 (2)0.0398 (10)
C60.7413 (5)0.2130 (8)0.6238 (2)0.0356 (10)
C50.6944 (5)0.3865 (8)0.5635 (2)0.0396 (10)
H50.56290.38270.5340.048*
C40.8453 (6)0.5654 (8)0.5477 (2)0.0406 (11)
H40.81830.68550.50650.049*
C31.0351 (6)0.5702 (8)0.5917 (2)0.0395 (10)
H31.13570.69670.58040.047*
C21.0833 (6)0.3952 (8)0.6520 (2)0.0371 (10)
H21.21460.39860.68150.045*
C10.9315 (5)0.2159 (9)0.6670 (2)0.0339 (10)
C91.1290 (5)−0.0424 (8)0.7759 (2)0.0395 (10)
H9A1.2449−0.06640.74730.047*
H9B1.1091−0.21790.80110.047*
C101.1851 (6)0.1760 (8)0.8340 (2)0.0358 (10)
C111.3769 (6)0.2963 (9)0.8421 (2)0.0456 (11)
H111.47290.24440.81040.055*
C121.4297 (7)0.4925 (10)0.8963 (3)0.0543 (13)
H121.56170.5750.90130.065*
C131.2940 (8)0.5685 (9)0.9425 (2)0.0561 (13)
H131.33160.70190.97990.067*
C141.1016 (7)0.4498 (10)0.9345 (2)0.0550 (12)
H141.00560.50230.96610.066*
C151.0489 (6)0.2540 (8)0.8801 (2)0.0451 (11)
H150.91640.17270.87470.054*
N10.9447 (4)0.0189 (6)0.72476 (17)0.0355 (9)
O10.7208 (4)−0.2996 (6)0.76148 (16)0.0584 (9)
O20.4417 (4)−0.0659 (6)0.63438 (16)0.0561 (9)
U11U22U33U12U13U23
C80.052 (3)0.036 (3)0.040 (3)0.004 (2)0.013 (2)−0.007 (2)
C70.039 (2)0.040 (3)0.042 (3)0.000 (2)0.012 (2)−0.012 (2)
C60.038 (2)0.035 (2)0.032 (3)0.006 (2)−0.0002 (19)−0.005 (2)
C50.034 (2)0.044 (3)0.039 (3)0.001 (2)−0.0022 (18)−0.009 (2)
C40.051 (3)0.036 (3)0.033 (3)0.000 (2)0.000 (2)−0.001 (2)
C30.054 (3)0.028 (2)0.038 (3)−0.001 (2)0.013 (2)−0.007 (2)
C20.046 (2)0.035 (2)0.031 (2)0.004 (2)0.0050 (18)−0.003 (2)
C10.040 (2)0.034 (2)0.029 (2)0.001 (2)0.0087 (19)−0.008 (2)
C90.045 (2)0.038 (2)0.034 (2)0.006 (2)0.0028 (18)−0.001 (2)
C100.045 (2)0.032 (2)0.028 (3)0.006 (2)−0.0017 (19)0.007 (2)
C110.045 (3)0.046 (3)0.043 (3)0.004 (2)0.000 (2)0.003 (2)
C120.059 (3)0.048 (3)0.050 (3)−0.002 (2)−0.011 (2)0.010 (3)
C130.084 (4)0.044 (3)0.035 (3)−0.004 (3)−0.010 (3)−0.003 (2)
C140.080 (3)0.046 (3)0.041 (3)0.005 (3)0.014 (2)−0.004 (3)
C150.060 (3)0.039 (3)0.037 (3)−0.005 (2)0.009 (2)−0.001 (2)
N10.0379 (18)0.036 (2)0.032 (2)−0.0020 (17)0.0025 (15)0.0040 (18)
O10.071 (2)0.0487 (19)0.058 (2)−0.0078 (18)0.0194 (16)0.008 (2)
O20.0411 (16)0.057 (2)0.071 (2)−0.0102 (16)0.0099 (14)−0.0093 (18)
C8—O11.221 (5)C9—N11.449 (4)
C8—N11.371 (5)C9—C101.511 (5)
C8—C71.544 (5)C9—H9A0.99
C7—O21.209 (4)C9—H9B0.99
C7—C61.457 (5)C10—C151.368 (5)
C6—C11.379 (5)C10—C111.380 (5)
C6—C51.386 (5)C11—C121.384 (6)
C5—C41.384 (5)C11—H110.95
C5—H50.95C12—C131.364 (6)
C4—C31.382 (5)C12—H120.95
C4—H40.95C13—C141.380 (6)
C3—C21.392 (5)C13—H130.95
C3—H30.95C14—C151.385 (6)
C2—C11.385 (5)C14—H140.95
C2—H20.95C15—H150.95
C1—N11.420 (5)
O1—C8—N1125.7 (4)C10—C9—H9A108.8
O1—C8—C7127.2 (4)N1—C9—H9B108.8
N1—C8—C7107.1 (4)C10—C9—H9B108.8
O2—C7—C6130.8 (4)H9A—C9—H9B107.7
O2—C7—C8124.6 (4)C15—C10—C11119.0 (4)
C6—C7—C8104.6 (3)C15—C10—C9120.8 (4)
C1—C6—C5121.7 (4)C11—C10—C9120.2 (4)
C1—C6—C7107.7 (4)C10—C11—C12120.2 (4)
C5—C6—C7130.6 (4)C10—C11—H11119.9
C4—C5—C6117.9 (4)C12—C11—H11119.9
C4—C5—H5121.1C13—C12—C11120.7 (5)
C6—C5—H5121.1C13—C12—H12119.7
C3—C4—C5120.3 (4)C11—C12—H12119.7
C3—C4—H4119.8C12—C13—C14119.4 (4)
C5—C4—H4119.8C12—C13—H13120.3
C4—C3—C2122.0 (4)C14—C13—H13120.3
C4—C3—H3119C13—C14—C15119.8 (4)
C2—C3—H3119C13—C14—H14120.1
C1—C2—C3117.2 (4)C15—C14—H14120.1
C1—C2—H2121.4C10—C15—C14120.9 (4)
C3—C2—H2121.4C10—C15—H15119.6
C6—C1—C2120.9 (4)C14—C15—H15119.6
C6—C1—N1111.7 (3)C8—N1—C1108.9 (3)
C2—C1—N1127.4 (3)C8—N1—C9125.9 (3)
N1—C9—C10113.6 (3)C1—N1—C9124.9 (3)
N1—C9—H9A108.8
O1—C8—C7—O20.5 (6)N1—C9—C10—C11−124.2 (4)
N1—C8—C7—O2−179.1 (4)C15—C10—C11—C120.1 (6)
O1—C8—C7—C6−179.8 (4)C9—C10—C11—C12−178.7 (4)
N1—C8—C7—C60.6 (4)C10—C11—C12—C130.3 (6)
O2—C7—C6—C1179.0 (4)C11—C12—C13—C14−0.6 (7)
C8—C7—C6—C1−0.7 (4)C12—C13—C14—C150.5 (6)
O2—C7—C6—C5−1.2 (7)C11—C10—C15—C14−0.2 (6)
C8—C7—C6—C5179.1 (4)C9—C10—C15—C14178.6 (4)
C1—C6—C5—C4−0.1 (6)C13—C14—C15—C100.0 (6)
C7—C6—C5—C4−179.8 (4)O1—C8—N1—C1−180.0 (4)
C6—C5—C4—C3−0.7 (6)C7—C8—N1—C1−0.4 (4)
C5—C4—C3—C21.1 (6)O1—C8—N1—C95.0 (6)
C4—C3—C2—C1−0.7 (5)C7—C8—N1—C9−175.4 (3)
C5—C6—C1—C20.4 (6)C6—C1—N1—C8−0.1 (4)
C7—C6—C1—C2−179.8 (3)C2—C1—N1—C8−179.8 (4)
C5—C6—C1—N1−179.3 (3)C6—C1—N1—C9175.0 (3)
C7—C6—C1—N10.5 (4)C2—C1—N1—C9−4.7 (6)
C3—C2—C1—C6−0.1 (5)C10—C9—N1—C8−111.7 (4)
C3—C2—C1—N1179.6 (4)C10—C9—N1—C174.0 (4)
N1—C9—C10—C1557.0 (5)
D—H···AD—HH···AD···AD—H···A
C3—H3···O2i0.952.413.213 (5)143
C9—H9A···O2ii0.992.593.525 (4)159
C9—H9B···O10.992.582.941 (5)101
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O2i0.952.413.213 (5)143
C9—H9A⋯O2ii0.992.593.525 (4)159

Symmetry codes: (i) ; (ii) .

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