Literature DB >> 22412591

3,6-Dimethyl-N,N-bis-(pyridin-2-yl)-1,2,4,5-tetra-zine-1,4-dicarboxamide.

Guo-Wu Rao, Yan-Mei Guo, Qun Shen.   

Abstract

In the title mol-ecule, C(16)H(16)N(8)O(2), four atoms of the tetra-zine ring are coplanar, with the largest deviation from the plane being 0.0236 (12) Å; the other two atoms of the tetra-zine ring deviate on the same side from this plane by 0.320 (4) and 0.335 (4) Å. Therefore, the central tetra-zine ring exhibits a boat conformation. The dihedral angles between the mean plane of the four coplanar atoms of the tetrazine ring and the two pyridine rings are 26.22 (10) and 6.97 (5)°. The two pyridine rings form a dihedral angle of 31.27 (8)°. In the molecule, there are a number of short C-H⋯O interactions. In the crystal, molecules are linked via a C-H⋯O interaction to form zigzag chains propagating along the [010] direction.

Entities:  

Year:  2012        PMID: 22412591      PMCID: PMC3295480          DOI: 10.1107/S1600536812005405

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the activities of 1,2,4,5-tetra­zine derivatives in chemical reactions, see: Domingo et al. (2009 ▶); Lorincz et al. (2010 ▶). For biological activities in 1,2,4,5-tetra­zine derivatives, see: Eremeev et al. (1978 ▶, 1980 ▶); Neunhoeffer (1984 ▶); Sauer (1996 ▶). For anti­tumor activities of 1,2,4,5-tetra­zine derivatives, see: Hu et al. (2002 ▶, 2004 ▶); Rao & Hu (2005 ▶, 2006 ▶). For typical bond lengths for C=N double and CN and NN single bonds, see: Allen et al. (1987 ▶). For the synthesis of the title compound, see: Hu et al. (2004 ▶); Skorianetz & Kováts (1970 ▶, 1971 ▶); Sun et al. (2003 ▶).

Experimental

Crystal data

C16H16N8O2 M = 352.37 Monoclinic, a = 11.753 (2) Å b = 20.081 (4) Å c = 7.2012 (14) Å β = 96.273 (3)° V = 1689.4 (6) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.36 × 0.23 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.965, T max = 0.981 7032 measured reflections 2985 independent reflections 2430 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.182 S = 1.07 2985 reflections 236 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005405/zj2056sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005405/zj2056Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812005405/zj2056Isup3.cdx Supplementary material file. DOI: 10.1107/S1600536812005405/zj2056Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N8O2Z = 4
Mr = 352.37F(000) = 736
Monoclinic, P21/cDx = 1.385 Mg m3
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 11.753 (2) Åθ = 3.0–28.2°
b = 20.081 (4) ŵ = 0.10 mm1
c = 7.2012 (14) ÅT = 298 K
β = 96.273 (3)°Block, colourless
V = 1689.4 (6) Å30.36 × 0.23 × 0.20 mm
Bruker SMART CCD area-detector diffractometer2985 independent reflections
Radiation source: fine-focus sealed tube2430 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
φ and ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −13→11
Tmin = 0.965, Tmax = 0.981k = −23→22
7032 measured reflectionsl = −8→8
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.061H-atom parameters constrained
wR(F2) = 0.182w = 1/[σ2(Fo2) + (0.0986P)2 + 0.7423P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2985 reflectionsΔρmax = 0.44 e Å3
236 parametersΔρmin = −0.33 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.012 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.70522 (17)0.06533 (10)0.3165 (3)0.0460 (5)
O20.94498 (16)0.25045 (9)0.2447 (3)0.0587 (6)
O10.54879 (15)0.00173 (9)0.2281 (3)0.0618 (6)
N40.80771 (16)0.17897 (10)0.3261 (3)0.0464 (5)
N50.69810 (17)0.17708 (10)0.3912 (3)0.0481 (6)
N20.82657 (17)0.06420 (10)0.3487 (3)0.0480 (6)
N60.78462 (18)0.29223 (10)0.3540 (3)0.0489 (6)
H60.72170.28010.39480.059*
N80.70889 (18)0.39638 (11)0.3514 (3)0.0529 (6)
C120.8038 (2)0.36064 (12)0.3445 (3)0.0434 (6)
C30.8743 (2)0.12142 (12)0.3484 (4)0.0448 (6)
N70.7973 (2)−0.14331 (12)0.1576 (4)0.0649 (7)
N30.72486 (18)−0.04631 (10)0.2546 (3)0.0532 (6)
H30.7933−0.04030.30730.064*
C60.6486 (2)0.12036 (12)0.3784 (3)0.0432 (6)
C40.6513 (2)0.00504 (12)0.2642 (4)0.0449 (6)
C50.8541 (2)0.24270 (12)0.3062 (4)0.0453 (6)
C70.7024 (2)−0.10818 (12)0.1687 (4)0.0470 (6)
C20.5324 (2)0.11538 (14)0.4433 (4)0.0570 (7)
H2A0.50460.07060.42630.086*
H2B0.48110.14530.37210.086*
H2C0.53690.12700.57330.086*
C130.9103 (2)0.38885 (13)0.3336 (4)0.0503 (7)
H130.97530.36250.33250.060*
C80.5943 (2)−0.13104 (13)0.1018 (4)0.0538 (7)
H80.5294−0.10550.11300.065*
C160.7187 (2)0.46207 (14)0.3430 (4)0.0585 (8)
H160.65300.48760.34760.070*
C90.5865 (3)−0.19228 (15)0.0190 (4)0.0637 (8)
H90.5153−0.2090−0.02760.076*
C140.9165 (2)0.45670 (14)0.3243 (5)0.0590 (8)
H140.98660.47730.31560.071*
C11.0012 (2)0.12417 (14)0.3833 (5)0.0599 (8)
H1A1.02620.16960.37780.090*
H1B1.03400.09850.29000.090*
H1C1.02550.10620.50470.090*
C150.8196 (2)0.49461 (14)0.3279 (4)0.0617 (8)
H150.82250.54080.32040.074*
C110.7852 (3)−0.20271 (15)0.0760 (6)0.0745 (10)
H110.8509−0.22780.06730.089*
C100.6832 (3)−0.22915 (15)0.0042 (5)0.0677 (9)
H100.6792−0.2708−0.05280.081*
U11U22U33U12U13U23
N10.0367 (11)0.0442 (12)0.0563 (13)−0.0043 (8)0.0015 (9)−0.0017 (9)
O20.0514 (11)0.0516 (11)0.0763 (14)−0.0098 (8)0.0211 (10)−0.0047 (9)
O10.0400 (11)0.0556 (12)0.0884 (15)−0.0066 (8)0.0015 (10)−0.0091 (10)
N40.0383 (11)0.0449 (12)0.0569 (13)−0.0051 (9)0.0096 (9)−0.0016 (9)
N50.0416 (12)0.0473 (12)0.0564 (13)−0.0014 (9)0.0106 (10)0.0033 (10)
N20.0385 (11)0.0458 (12)0.0589 (14)−0.0031 (9)0.0014 (9)−0.0054 (10)
N60.0411 (11)0.0452 (12)0.0612 (14)−0.0053 (9)0.0091 (10)0.0018 (10)
N80.0386 (12)0.0528 (13)0.0662 (15)−0.0012 (9)0.0005 (10)−0.0054 (11)
C120.0392 (13)0.0466 (14)0.0435 (14)−0.0031 (10)−0.0001 (10)−0.0015 (10)
C30.0423 (13)0.0445 (14)0.0476 (14)−0.0025 (10)0.0042 (11)−0.0062 (11)
N70.0469 (14)0.0496 (13)0.097 (2)−0.0010 (10)0.0032 (13)−0.0065 (13)
N30.0397 (12)0.0461 (12)0.0713 (16)−0.0053 (9)−0.0047 (10)−0.0034 (11)
C60.0417 (13)0.0430 (13)0.0446 (14)−0.0024 (10)0.0037 (10)0.0049 (10)
C40.0391 (14)0.0456 (14)0.0498 (15)−0.0056 (10)0.0033 (11)0.0033 (11)
C50.0424 (14)0.0458 (14)0.0475 (14)−0.0053 (11)0.0048 (11)−0.0032 (11)
C70.0438 (14)0.0422 (14)0.0546 (16)−0.0047 (11)0.0029 (11)0.0049 (11)
C20.0475 (15)0.0543 (16)0.0718 (19)−0.0021 (12)0.0180 (13)0.0038 (13)
C130.0383 (13)0.0482 (15)0.0634 (17)−0.0017 (11)0.0012 (12)−0.0047 (12)
C80.0452 (15)0.0504 (15)0.0643 (18)−0.0017 (11)−0.0011 (13)−0.0011 (13)
C160.0480 (15)0.0530 (16)0.074 (2)0.0060 (12)0.0023 (13)−0.0084 (14)
C90.0574 (17)0.0631 (18)0.068 (2)−0.0102 (14)−0.0051 (14)−0.0099 (15)
C140.0464 (15)0.0530 (16)0.079 (2)−0.0108 (12)0.0120 (14)−0.0075 (14)
C10.0422 (15)0.0531 (16)0.083 (2)−0.0020 (12)0.0027 (14)−0.0067 (14)
C150.0600 (18)0.0449 (15)0.081 (2)−0.0065 (13)0.0130 (15)−0.0078 (14)
C110.0591 (19)0.0521 (17)0.113 (3)0.0049 (14)0.0123 (18)−0.0106 (17)
C100.070 (2)0.0518 (17)0.081 (2)−0.0028 (15)0.0032 (16)−0.0148 (15)
N1—C61.388 (3)C6—C21.494 (3)
N1—C41.399 (3)C7—C81.387 (4)
N1—N21.420 (3)C2—H2A0.9600
O2—C51.210 (3)C2—H2B0.9600
O1—C41.206 (3)C2—H2C0.9600
N4—C31.395 (3)C13—C141.367 (4)
N4—C51.405 (3)C13—H130.9300
N4—N51.419 (3)C8—C91.366 (4)
N5—C61.278 (3)C8—H80.9300
N2—C31.279 (3)C16—C151.369 (4)
N6—C51.356 (3)C16—H160.9300
N6—C121.395 (3)C9—C101.370 (4)
N6—H60.8600C9—H90.9300
N8—C161.326 (4)C14—C151.372 (4)
N8—C121.332 (3)C14—H140.9300
C12—C131.384 (3)C1—H1A0.9600
C3—C11.487 (3)C1—H1B0.9600
N7—C71.329 (3)C1—H1C0.9600
N7—C111.331 (4)C15—H150.9300
N3—C41.353 (3)C11—C101.360 (4)
N3—C71.400 (3)C11—H110.9300
N3—H30.8600C10—H100.9300
C6—N1—C4123.8 (2)C6—C2—H2B109.5
C6—N1—N2117.91 (19)H2A—C2—H2B109.5
C4—N1—N2116.61 (19)C6—C2—H2C109.5
C3—N4—C5123.2 (2)H2A—C2—H2C109.5
C3—N4—N5117.25 (19)H2B—C2—H2C109.5
C5—N4—N5115.78 (19)C14—C13—C12117.7 (2)
C6—N5—N4115.0 (2)C14—C13—H13121.2
C3—N2—N1114.7 (2)C12—C13—H13121.2
C5—N6—C12127.2 (2)C9—C8—C7117.7 (3)
C5—N6—H6116.4C9—C8—H8121.1
C12—N6—H6116.4C7—C8—H8121.1
C16—N8—C12117.2 (2)N8—C16—C15124.0 (3)
N8—C12—C13123.2 (2)N8—C16—H16118.0
N8—C12—N6112.9 (2)C15—C16—H16118.0
C13—C12—N6123.9 (2)C8—C9—C10120.2 (3)
N2—C3—N4120.3 (2)C8—C9—H9119.9
N2—C3—C1117.7 (2)C10—C9—H9119.9
N4—C3—C1121.9 (2)C13—C14—C15120.2 (3)
C7—N7—C11116.9 (2)C13—C14—H14119.9
C4—N3—C7127.5 (2)C15—C14—H14119.9
C4—N3—H3116.2C3—C1—H1A109.5
C7—N3—H3116.2C3—C1—H1B109.5
N5—C6—N1120.2 (2)H1A—C1—H1B109.5
N5—C6—C2117.5 (2)C3—C1—H1C109.5
N1—C6—C2122.3 (2)H1A—C1—H1C109.5
O1—C4—N3125.2 (2)H1B—C1—H1C109.5
O1—C4—N1121.2 (2)C16—C15—C14117.7 (3)
N3—C4—N1113.6 (2)C16—C15—H15121.2
O2—C5—N6125.4 (2)C14—C15—H15121.2
O2—C5—N4121.5 (2)N7—C11—C10124.4 (3)
N6—C5—N4113.0 (2)N7—C11—H11117.8
N7—C7—C8123.1 (3)C10—C11—H11117.8
N7—C7—N3112.3 (2)C11—C10—C9117.6 (3)
C8—C7—N3124.6 (2)C11—C10—H10121.2
C6—C2—H2A109.5C9—C10—H10121.2
C3—N4—N5—C6−32.6 (3)C6—N1—C4—N3−164.0 (2)
C5—N4—N5—C6168.6 (2)N2—N1—C4—N30.8 (3)
C6—N1—N2—C3−31.4 (3)C12—N6—C5—O2−0.8 (4)
C4—N1—N2—C3162.8 (2)C12—N6—C5—N4−177.8 (2)
C16—N8—C12—C131.6 (4)C3—N4—C5—O225.5 (4)
C16—N8—C12—N6−179.9 (2)N5—N4—C5—O2−177.0 (2)
C5—N6—C12—N8162.7 (2)C3—N4—C5—N6−157.3 (2)
C5—N6—C12—C13−18.8 (4)N5—N4—C5—N60.1 (3)
N1—N2—C3—N42.8 (3)C11—N7—C7—C80.7 (5)
N1—N2—C3—C1179.3 (2)C11—N7—C7—N3−179.2 (3)
C5—N4—C3—N2−173.6 (2)C4—N3—C7—N7169.7 (3)
N5—N4—C3—N229.3 (3)C4—N3—C7—C8−10.2 (4)
C5—N4—C3—C110.0 (4)N8—C12—C13—C14−1.9 (4)
N5—N4—C3—C1−147.1 (3)N6—C12—C13—C14179.8 (3)
N4—N5—C6—N14.2 (3)N7—C7—C8—C9−0.8 (4)
N4—N5—C6—C2−179.5 (2)N3—C7—C8—C9179.1 (3)
C4—N1—C6—N5−167.2 (2)C12—N8—C16—C15−0.1 (4)
N2—N1—C6—N528.1 (3)C7—C8—C9—C100.1 (5)
C4—N1—C6—C216.6 (4)C12—C13—C14—C150.7 (4)
N2—N1—C6—C2−148.0 (2)N8—C16—C15—C14−1.0 (5)
C7—N3—C4—O113.6 (5)C13—C14—C15—C160.7 (5)
C7—N3—C4—N1−164.6 (2)C7—N7—C11—C100.1 (5)
C6—N1—C4—O117.6 (4)N7—C11—C10—C9−0.7 (6)
N2—N1—C4—O1−177.6 (2)C8—C9—C10—C110.6 (5)
D—H···AD—HH···AD···AD—H···A
C1—H1A···O20.962.072.778 (4)130
C2—H2A···O10.962.092.777 (4)127
C8—H8···O10.932.312.886 (3)120
C16—H16···O1i0.932.393.229 (3)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯O20.962.072.778 (4)130
C2—H2A⋯O10.962.092.777 (4)127
C8—H8⋯O10.932.312.886 (3)120
C16—H16⋯O1i0.932.393.229 (3)150

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Computational study on the reactivity of tetrazines toward organometallic reagents.

Authors:  Krisztián Lorincz; András Kotschy; Jaana Tammiku-Taul; Lauri Sikk; Peeter Burk
Journal:  J Org Chem       Date:  2010-09-17       Impact factor: 4.354

3.  Synthesis, X-ray crystallographic analysis, and antitumor activity of 1-acyl-3,6-disubstituted phenyl-1,4-dihydro-1,2,4,5-tetrazines.

Authors:  Guo-Wu Rao; Wei-Xiao Hu
Journal:  Bioorg Med Chem Lett       Date:  2005-06-15       Impact factor: 2.823

4.  Synthesis, structure analysis, and antitumor activity of 3,6-disubstituted-1,4-dihydro-1,2,4,5-tetrazine derivatives.

Authors:  Guo-Wu Rao; Wei-Xiao Hu
Journal:  Bioorg Med Chem Lett       Date:  2006-05-18       Impact factor: 2.823

5.  Toward an understanding of the unexpected regioselective hetero-Diels-Alder reactions of asymmetric tetrazines with electron-rich ethylenes: a DFT study.

Authors:  Luis R Domingo; M Teresa Picher; José A Sáez
Journal:  J Org Chem       Date:  2009-04-03       Impact factor: 4.354

6.  Synthesis and antitumor activity of s-tetrazine derivatives.

Authors:  Wei-Xiao Hu; Guo-Wu Rao; Ya-Quan Sun
Journal:  Bioorg Med Chem Lett       Date:  2004-03-08       Impact factor: 2.823

  6 in total

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