Literature DB >> 22412590

Erythromycin A dimethyl sulfoxide disolvate 1.43-hydrate.

Jürgen Brüning, Tanja K Trepte, Jan W Bats, Martin U Schmidt.   

Abstract

The title compound, C(37)H(67)NO(13)·2C(2)H(6)OS·1.43H(2)O, is a macrolide anti-biotic with better solubility and better dermal penetration abilities than erythromycin A itself. The asymmetric unit of this form contains one erythromycin A mol-ecule, two dimethyl sulfoxide (DMSO) solvent mol-ecules, a fully occupied water mol-ecule and a partially occupied water mol-ecule with an occupancy factor of 0.432 (11). The 14-membered ring of the erythronolide fragment has a conformation which differs considerably from that in erythromycin A dihydrate [Stephenson, Stowell, Toma, Pfeiffer & Byrn (1997 ▶). J. Pharm. Sci.86, 1239-1244]. One of the two DMSO mol-ecules is disordered over two orientations; the orientation depends on the presence or absence of the second, partially occupied, water mol-ecule. In the crystal, erythromycin mol-ecules are connected by O-H⋯O hydrogen bonds involving the hy-droxy groups and the fully occupied water mol-ecule to form layers parallel to (010). These layers are connected along the b-axis direction only by a possible hydrogen-bonding contact involving the partially occupied water mol-ecule.

Entities:  

Year:  2012        PMID: 22412590      PMCID: PMC3295479          DOI: 10.1107/S1600536812005223

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a description of the title compound, see: Schmidt et al. (2011 ▶). For general background, see: Woodward et al. (1981 ▶). For crystallization experiments, see: Mirza et al. (2003 ▶). For related structures, see: Stephenson et al. (1997 ▶); Henry & Zhang (2007 ▶); Tian et al. (2009 ▶). For refinement details, see: Flack (1983 ▶); Spek (2009 ▶).

Experimental

Crystal data

C37H67NO13·2C2H6SO·1.43H2O M = 915.93 Monoclinic, a = 11.1716 (7) Å b = 19.4025 (12) Å c = 12.0025 (7) Å β = 106.245 (1)° V = 2497.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.17 mm−1 T = 296 K 0.55 × 0.42 × 0.32 mm

Data collection

Siemens SMART 1K CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.870, T max = 0.947 27453 measured reflections 10520 independent reflections 7109 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.142 S = 1.04 10520 reflections 579 parameters 23 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.34 e Å−3 Absolute structure: Flack (1983 ▶), with 4965 Friedel pairs Flack parameter: 0.02 (9) Data collection: SMART (Siemens, 1995 ▶); cell refinement: SAINT (Siemens, 1995 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005223/sj5188sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005223/sj5188Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C37H67NO13·2C2H6SO·1.43H2OF(000) = 997
Mr = 915.93Dx = 1.218 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 6074 reflections
a = 11.1716 (7) Åθ = 3–24°
b = 19.4025 (12) ŵ = 0.17 mm1
c = 12.0025 (7) ÅT = 296 K
β = 106.245 (1)°Block, colourless
V = 2497.8 (3) Å30.55 × 0.42 × 0.32 mm
Z = 2
Siemens SMART 1K CCD diffractometer10520 independent reflections
Radiation source: normal-focus sealed tube7109 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.037
ω scansθmax = 27.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −14→14
Tmin = 0.870, Tmax = 0.947k = −24→24
27453 measured reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.062H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.142w = 1/[σ2(Fo2) + (0.062P)2 + 0.61P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
10520 reflectionsΔρmax = 0.37 e Å3
579 parametersΔρmin = −0.34 e Å3
23 restraintsAbsolute structure: Flack (1983), with 4965 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.02 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.9259 (2)0.73051 (18)0.7044 (2)0.0678 (8)
O30.89509 (19)0.71189 (13)1.06566 (17)0.0416 (5)
O50.66199 (19)0.54287 (13)0.93991 (17)0.0379 (5)
O60.9249 (2)0.56635 (14)0.8216 (2)0.0498 (6)
H6A0.99000.56500.87430.075*
O7W0.1470 (3)0.57984 (19)1.0016 (2)0.0695 (8)
H7C0.129 (4)0.592 (3)1.063 (2)0.11 (2)*
H7D0.207 (3)0.552 (2)1.022 (3)0.094 (18)*
O8W0.5845 (8)0.9276 (5)0.2582 (8)0.106 (4)0.432 (11)
O90.5978 (4)0.47211 (19)0.4648 (3)0.0971 (11)
O110.7227 (3)0.63909 (15)0.4476 (2)0.0601 (7)
H11B0.69610.66450.39160.090*
O120.5552 (3)0.73381 (19)0.3910 (2)0.0767 (9)
H12A0.48170.74540.37140.115*
O130.7336 (2)0.77075 (14)0.68886 (18)0.0441 (5)
O240.8552 (2)0.73134 (15)1.3084 (2)0.0556 (6)
O250.9804 (2)0.62995 (16)1.4629 (2)0.0600 (7)
H25B0.90570.63801.45050.090*
O261.0377 (2)0.63220 (14)1.17612 (19)0.0493 (6)
O300.7064 (2)0.47251 (14)1.0976 (2)0.0511 (6)
O340.4210 (2)0.56850 (14)0.9577 (2)0.0517 (6)
H34B0.41990.57170.88930.078*
N330.3193 (3)0.46849 (16)1.0750 (2)0.0466 (7)
C10.8498 (3)0.75202 (17)0.7486 (3)0.0389 (7)
C20.8725 (3)0.76395 (17)0.8779 (3)0.0389 (7)
H2A0.80370.79170.88950.047*
C30.8777 (3)0.69572 (17)0.9450 (2)0.0335 (7)
H3A0.94910.66860.93750.040*
C40.7580 (3)0.65215 (17)0.9018 (3)0.0363 (7)
H4A0.73600.65240.81680.044*
C50.7790 (3)0.57594 (17)0.9404 (3)0.0345 (7)
H5A0.83680.57361.01850.041*
C60.8284 (3)0.52994 (18)0.8564 (3)0.0441 (8)
C70.7203 (3)0.5174 (2)0.7452 (3)0.0469 (8)
H7A0.67880.47500.75560.056*
H7B0.66050.55450.73850.056*
C80.7540 (4)0.51235 (19)0.6293 (3)0.0533 (9)
H8A0.80790.55150.62500.064*
C90.6353 (4)0.5193 (2)0.5315 (3)0.0599 (11)
C100.5615 (3)0.5868 (2)0.5174 (3)0.0555 (10)
H10A0.52420.58970.58210.067*
C110.6505 (3)0.6485 (2)0.5281 (3)0.0479 (9)
H11A0.70880.64630.60610.058*
C120.5943 (3)0.7213 (2)0.5137 (3)0.0515 (9)
C130.7001 (3)0.7736 (2)0.5620 (3)0.0478 (8)
H13A0.77280.76040.53630.057*
C140.9918 (4)0.8051 (2)0.9199 (3)0.0569 (10)
H14A0.98440.84710.87620.085*
H14B1.06030.77850.90930.085*
H14C1.00630.81581.00070.085*
C150.6484 (3)0.6862 (2)0.9362 (4)0.0573 (10)
H15A0.64010.73320.91050.086*
H15B0.66420.68471.01900.086*
H15C0.57270.66170.90030.086*
C160.8815 (4)0.46350 (19)0.9167 (4)0.0577 (10)
H16A0.91360.43590.86530.087*
H16B0.81690.43850.93790.087*
H16C0.94740.47400.98530.087*
C170.8250 (5)0.4457 (3)0.6187 (5)0.0940 (17)
H17A0.84440.44540.54570.141*
H17B0.77390.40650.62290.141*
H17C0.90080.44360.68080.141*
C180.4532 (4)0.5846 (3)0.4040 (4)0.0864 (15)
H18A0.40330.54440.40400.130*
H18B0.48660.58310.33850.130*
H18C0.40250.62510.39910.130*
C190.4898 (4)0.7309 (3)0.5700 (4)0.0748 (12)
H19A0.42510.69790.53860.112*
H19B0.45670.77670.55470.112*
H19C0.52150.72420.65220.112*
C200.6678 (4)0.8489 (2)0.5289 (3)0.0692 (12)
H20A0.62920.85170.44590.083*
H20B0.60760.86490.56770.083*
C210.7804 (5)0.8958 (2)0.5608 (4)0.0855 (15)
H21A0.75490.94230.53860.128*
H21B0.83950.88110.52100.128*
H21C0.81830.89390.64310.128*
C221.0168 (3)0.7020 (2)1.1400 (3)0.0445 (8)
H22A1.07560.71311.09540.053*
C231.0425 (4)0.7513 (2)1.2420 (3)0.0535 (9)
H23A1.00950.79621.21350.064*
H23B1.13200.75611.27340.064*
C240.9880 (3)0.7304 (2)1.3406 (3)0.0502 (9)
C251.0223 (3)0.6553 (2)1.3694 (3)0.0476 (9)
H25A1.11360.65291.39410.057*
C260.9787 (3)0.6105 (2)1.2625 (3)0.0473 (8)
H26A0.88810.61451.23120.057*
C271.0414 (5)0.7765 (3)1.4463 (3)0.0729 (12)
H27A1.01960.82361.42600.109*
H27B1.13050.77191.47110.109*
H27C1.00750.76291.50820.109*
C280.7942 (5)0.7927 (2)1.2621 (4)0.0775 (13)
H28A0.83960.83151.30270.116*
H28B0.71130.79281.27070.116*
H28C0.79000.79581.18130.116*
C291.0136 (5)0.5356 (2)1.2872 (4)0.0731 (12)
H29A0.98270.50921.21750.110*
H29B0.97760.51871.34570.110*
H29C1.10270.53141.31400.110*
C300.6344 (3)0.52944 (18)1.0432 (3)0.0379 (7)
H30A0.65120.57001.09390.046*
C310.6781 (3)0.4524 (2)1.2038 (3)0.0551 (10)
H31A0.69260.49171.25710.066*
C320.5423 (3)0.4309 (2)1.1766 (3)0.0571 (10)
H32A0.52250.42061.24860.069*
H32B0.52950.38931.13010.069*
C330.4542 (3)0.48677 (19)1.1117 (3)0.0414 (8)
H33A0.46310.52601.16470.050*
C340.4951 (3)0.51140 (18)1.0086 (3)0.0379 (7)
H34A0.48070.47410.95120.046*
C350.7669 (4)0.3950 (3)1.2574 (4)0.0831 (14)
H35A0.85120.41121.27290.125*
H35B0.75460.35671.20470.125*
H35C0.75150.38061.32860.125*
C360.2757 (4)0.4494 (2)1.1756 (4)0.0681 (12)
H36A0.18630.44661.15250.102*
H36B0.30220.48371.23520.102*
H36C0.31010.40551.20490.102*
C370.2853 (4)0.4155 (2)0.9868 (3)0.0574 (10)
H37A0.32590.37311.01690.086*
H37B0.31090.42930.92020.086*
H37C0.19660.40900.96480.086*
S10.25601 (10)0.59971 (10)0.65505 (9)0.0772 (4)
O140.3849 (3)0.5796 (2)0.7224 (3)0.0901 (11)
C380.2103 (6)0.6649 (3)0.7334 (6)0.118 (2)
H38A0.22810.65140.81330.177*
H38B0.12240.67290.70260.177*
H38C0.25500.70630.72760.177*
C390.1537 (5)0.5351 (4)0.6804 (5)0.1078 (19)
H39A0.15960.49470.63610.162*
H39B0.06960.55200.65750.162*
H39C0.17670.52370.76150.162*
S20.32316 (11)0.78019 (6)0.13850 (11)0.0831 (4)0.482 (4)
O150.3312 (7)0.7602 (4)0.2610 (4)0.0988 (12)0.482 (4)
C400.3945 (18)0.7122 (7)0.0884 (13)0.129 (3)0.482 (4)
H40D0.34300.67190.08040.193*0.482 (4)
H40E0.47410.70310.14260.193*0.482 (4)
H40F0.40600.72390.01430.193*0.482 (4)
C410.4354 (12)0.8434 (6)0.1485 (12)0.126 (3)0.482 (4)
H41A0.40950.88500.17840.189*0.482 (4)
H41B0.44560.85210.07290.189*0.482 (4)
H41C0.51310.82820.19970.189*0.482 (4)
S2'0.32316 (11)0.78019 (6)0.13850 (11)0.0831 (4)0.518 (4)
O15'0.3821 (7)0.8140 (3)0.2530 (4)0.0988 (12)0.518 (4)
C40'0.3841 (18)0.6976 (5)0.1450 (13)0.129 (3)0.518 (4)
H40A0.35030.66960.19470.193*0.518 (4)
H40B0.47320.69950.17520.193*0.518 (4)
H40C0.36260.67800.06850.193*0.518 (4)
C41'0.4084 (12)0.8139 (7)0.0506 (10)0.126 (3)0.518 (4)
H41D0.38870.86190.03670.189*0.518 (4)
H41E0.38780.7896−0.02190.189*0.518 (4)
H41F0.49580.80890.08850.189*0.518 (4)
U11U22U33U12U13U23
O10.0607 (16)0.100 (2)0.0466 (14)0.0232 (16)0.0213 (13)0.0065 (15)
O30.0416 (12)0.0527 (14)0.0337 (11)0.0013 (10)0.0155 (10)0.0010 (10)
O50.0376 (12)0.0434 (12)0.0368 (11)−0.0056 (10)0.0174 (9)0.0028 (10)
O60.0447 (13)0.0531 (14)0.0593 (15)−0.0022 (12)0.0272 (11)−0.0008 (12)
O7W0.0553 (17)0.089 (2)0.0660 (18)0.0140 (16)0.0195 (14)0.0020 (17)
O8W0.098 (7)0.107 (7)0.108 (7)0.008 (5)0.018 (5)0.035 (5)
O90.133 (3)0.071 (2)0.085 (2)−0.027 (2)0.026 (2)−0.0360 (19)
O110.0719 (18)0.0600 (17)0.0573 (16)−0.0040 (13)0.0328 (14)0.0000 (13)
O120.079 (2)0.096 (2)0.0426 (14)0.0130 (19)−0.0045 (13)−0.0086 (15)
O130.0442 (13)0.0525 (14)0.0348 (11)0.0021 (11)0.0095 (10)−0.0015 (10)
O240.0551 (15)0.0602 (16)0.0537 (14)0.0110 (13)0.0187 (12)0.0153 (13)
O250.0606 (16)0.0774 (19)0.0468 (14)0.0079 (14)0.0230 (12)0.0203 (13)
O260.0482 (13)0.0596 (16)0.0418 (13)0.0092 (11)0.0155 (11)0.0054 (11)
O300.0460 (14)0.0614 (16)0.0490 (14)0.0072 (12)0.0185 (11)0.0173 (12)
O340.0453 (13)0.0538 (15)0.0624 (15)0.0109 (11)0.0254 (12)0.0157 (12)
N330.0462 (16)0.0517 (18)0.0483 (17)−0.0118 (14)0.0235 (13)−0.0027 (14)
C10.0444 (19)0.0345 (18)0.0403 (17)−0.0037 (15)0.0162 (15)0.0054 (14)
C20.0419 (17)0.0390 (18)0.0359 (16)−0.0019 (14)0.0109 (14)−0.0022 (14)
C30.0350 (16)0.0338 (16)0.0323 (15)0.0028 (13)0.0106 (13)0.0019 (13)
C40.0318 (16)0.0384 (19)0.0396 (17)0.0003 (13)0.0115 (13)0.0022 (14)
C50.0293 (15)0.0380 (17)0.0377 (16)−0.0026 (13)0.0119 (13)0.0056 (14)
C60.0425 (19)0.0395 (19)0.056 (2)−0.0014 (15)0.0229 (16)0.0039 (16)
C70.053 (2)0.046 (2)0.048 (2)−0.0054 (16)0.0236 (16)−0.0068 (16)
C80.075 (3)0.038 (2)0.058 (2)−0.0027 (18)0.036 (2)−0.0088 (17)
C90.083 (3)0.054 (3)0.051 (2)−0.020 (2)0.032 (2)−0.015 (2)
C100.056 (2)0.071 (3)0.0400 (18)−0.017 (2)0.0141 (16)−0.0113 (18)
C110.0454 (19)0.061 (2)0.0383 (19)−0.0096 (17)0.0137 (15)−0.0058 (17)
C120.048 (2)0.060 (2)0.0412 (19)−0.0007 (18)0.0044 (16)−0.0028 (17)
C130.059 (2)0.048 (2)0.0343 (17)−0.0002 (17)0.0096 (15)0.0023 (15)
C140.063 (2)0.053 (2)0.052 (2)−0.0158 (19)0.0111 (18)0.0087 (18)
C150.040 (2)0.042 (2)0.096 (3)0.0038 (16)0.028 (2)0.006 (2)
C160.062 (2)0.043 (2)0.073 (3)0.0062 (18)0.027 (2)0.0029 (19)
C170.127 (4)0.081 (3)0.093 (4)0.023 (3)0.062 (3)−0.019 (3)
C180.082 (3)0.104 (4)0.061 (3)−0.033 (3)−0.001 (2)−0.017 (3)
C190.049 (2)0.092 (3)0.080 (3)0.004 (2)0.014 (2)−0.011 (3)
C200.097 (3)0.055 (2)0.047 (2)0.000 (2)0.006 (2)0.0005 (19)
C210.144 (5)0.050 (3)0.072 (3)−0.011 (3)0.044 (3)−0.002 (2)
C220.0383 (18)0.058 (2)0.0389 (17)−0.0050 (16)0.0140 (15)0.0011 (16)
C230.058 (2)0.063 (2)0.0410 (19)−0.0133 (19)0.0151 (16)−0.0005 (17)
C240.060 (2)0.055 (2)0.0375 (18)−0.0081 (18)0.0171 (16)−0.0008 (16)
C250.0391 (18)0.069 (2)0.0361 (17)0.0025 (17)0.0121 (14)0.0079 (17)
C260.0414 (18)0.056 (2)0.0440 (19)0.0052 (17)0.0105 (15)0.0089 (17)
C270.104 (3)0.075 (3)0.045 (2)−0.019 (3)0.028 (2)−0.014 (2)
C280.098 (3)0.067 (3)0.068 (3)0.030 (3)0.025 (3)0.014 (2)
C290.107 (4)0.049 (2)0.064 (3)0.015 (2)0.025 (2)0.010 (2)
C300.0440 (18)0.0349 (18)0.0380 (17)−0.0009 (14)0.0166 (14)0.0002 (14)
C310.053 (2)0.069 (3)0.045 (2)−0.0018 (19)0.0162 (17)0.0171 (18)
C320.063 (2)0.062 (2)0.052 (2)−0.008 (2)0.0256 (19)0.0126 (19)
C330.0416 (18)0.048 (2)0.0362 (17)−0.0073 (15)0.0142 (14)−0.0032 (15)
C340.0397 (17)0.0386 (18)0.0393 (17)−0.0004 (15)0.0174 (14)0.0006 (15)
C350.074 (3)0.094 (4)0.078 (3)0.005 (3)0.016 (3)0.041 (3)
C360.072 (3)0.082 (3)0.065 (3)−0.024 (2)0.043 (2)−0.012 (2)
C370.055 (2)0.055 (2)0.063 (2)−0.0121 (18)0.0181 (19)−0.0080 (19)
S10.0550 (6)0.1259 (11)0.0512 (6)0.0139 (7)0.0158 (5)0.0244 (6)
O140.0610 (18)0.141 (3)0.0719 (19)0.027 (2)0.0256 (15)0.024 (2)
C380.112 (5)0.118 (5)0.116 (5)0.045 (4)0.019 (4)0.007 (4)
C390.086 (4)0.140 (5)0.096 (4)0.000 (4)0.025 (3)0.023 (4)
S20.0556 (6)0.1101 (10)0.0765 (7)0.0036 (6)0.0067 (5)0.0220 (7)
O150.104 (4)0.108 (3)0.0781 (11)−0.003 (2)0.014 (2)0.0190 (15)
C400.160 (7)0.121 (3)0.103 (8)0.032 (5)0.032 (7)0.010 (2)
C410.136 (7)0.148 (5)0.106 (4)−0.052 (4)0.054 (4)−0.014 (3)
S2'0.0556 (6)0.1101 (10)0.0765 (7)0.0036 (6)0.0067 (5)0.0220 (7)
O15'0.104 (4)0.108 (3)0.0781 (11)−0.003 (2)0.014 (2)0.0190 (15)
C40'0.160 (7)0.121 (3)0.103 (8)0.032 (5)0.032 (7)0.010 (2)
C41'0.136 (7)0.148 (5)0.106 (4)−0.052 (4)0.054 (4)−0.014 (3)
O1—C11.197 (4)C19—H19A0.9600
O3—C221.416 (4)C19—H19B0.9600
O3—C31.440 (4)C19—H19C0.9600
O5—C301.383 (3)C20—C211.513 (7)
O5—C51.454 (3)C20—H20A0.9700
O6—C61.445 (4)C20—H20B0.9700
O6—H6A0.8200C21—H21A0.9600
O7W—H7C0.845 (10)C21—H21B0.9600
O7W—H7D0.841 (10)C21—H21C0.9600
O9—C91.210 (5)C22—C231.517 (5)
O11—C111.434 (4)C22—H22A0.9800
O11—H11B0.8200C23—C241.529 (5)
O12—C121.436 (4)C23—H23A0.9700
O12—H12A0.8200C23—H23B0.9700
O13—C11.345 (4)C24—C251.523 (5)
O13—C131.464 (4)C24—C271.530 (5)
O24—C281.407 (5)C25—C261.512 (5)
O24—C241.425 (4)C25—H25A0.9800
O25—C251.419 (4)C26—C291.513 (5)
O25—H25B0.8200C26—H26A0.9800
O26—C221.421 (4)C27—H27A0.9600
O26—C261.438 (4)C27—H27B0.9600
O30—C301.414 (4)C27—H27C0.9600
O30—C311.450 (4)C28—H28A0.9600
O34—C341.415 (4)C28—H28B0.9600
O34—H34B0.8200C28—H28C0.9600
N33—C371.448 (5)C29—H29A0.9600
N33—C361.470 (4)C29—H29B0.9600
N33—C331.490 (4)C29—H29C0.9600
C1—C21.519 (4)C30—C341.534 (4)
C2—C141.514 (5)C30—H30A0.9800
C2—C31.542 (4)C31—C351.511 (6)
C2—H2A0.9800C31—C321.518 (5)
C3—C41.544 (4)C31—H31A0.9800
C3—H3A0.9800C32—C331.523 (5)
C4—C151.546 (5)C32—H32A0.9700
C4—C51.548 (4)C32—H32B0.9700
C4—H4A0.9800C33—C341.511 (4)
C5—C61.558 (4)C33—H33A0.9800
C5—H5A0.9800C34—H34A0.9800
C6—C161.516 (5)C35—H35A0.9600
C6—C71.548 (5)C35—H35B0.9600
C7—C81.542 (5)C35—H35C0.9600
C7—H7A0.9700C36—H36A0.9600
C7—H7B0.9700C36—H36B0.9600
C8—C91.512 (6)C36—H36C0.9600
C8—C171.542 (6)C37—H37A0.9600
C8—H8A0.9800C37—H37B0.9600
C9—C101.532 (6)C37—H37C0.9600
C10—C111.537 (5)S1—O141.493 (3)
C10—C181.549 (5)S1—C381.735 (6)
C10—H10A0.9800S1—C391.779 (6)
C11—C121.536 (6)C38—H38A0.9600
C11—H11A0.9800C38—H38B0.9600
C12—C191.514 (5)C38—H38C0.9600
C12—C131.544 (5)C39—H39A0.9600
C13—C201.530 (6)C39—H39B0.9600
C13—H13A0.9800C39—H39C0.9600
C14—H14A0.9600S2—O151.498 (5)
C14—H14B0.9600S2—C411.734 (6)
C14—H14C0.9600S2—C401.734 (6)
C15—H15A0.9600C40—H40D0.9600
C15—H15B0.9600C40—H40E0.9600
C15—H15C0.9600C40—H40F0.9600
C16—H16A0.9600C41—H41A0.9600
C16—H16B0.9600C41—H41B0.9600
C16—H16C0.9600C41—H41C0.9600
C17—H17A0.9600C40'—H40A0.9600
C17—H17B0.9600C40'—H40B0.9600
C17—H17C0.9600C40'—H40C0.9600
C18—H18A0.9600C41'—H41D0.9600
C18—H18B0.9600C41'—H41E0.9600
C18—H18C0.9600C41'—H41F0.9600
C22—O3—C3116.0 (2)H21B—C21—H21C109.5
C30—O5—C5120.3 (2)O3—C22—O26111.6 (3)
C6—O6—H6A109.5O3—C22—C23110.7 (3)
H7C—O7W—H7D106 (4)O26—C22—C23112.1 (3)
C11—O11—H11B109.5O3—C22—H22A107.4
C12—O12—H12A109.5O26—C22—H22A107.4
C1—O13—C13119.5 (2)C23—C22—H22A107.4
C28—O24—C24118.0 (3)C22—C23—C24115.6 (3)
C25—O25—H25B109.5C22—C23—H23A108.4
C22—O26—C26115.4 (3)C24—C23—H23A108.4
C30—O30—C31112.4 (2)C22—C23—H23B108.4
C34—O34—H34B109.5C24—C23—H23B108.4
C37—N33—C36110.0 (3)H23A—C23—H23B107.4
C37—N33—C33114.9 (3)O24—C24—C25104.5 (3)
C36—N33—C33111.0 (3)O24—C24—C23113.3 (3)
O1—C1—O13123.8 (3)C25—C24—C23107.4 (3)
O1—C1—C2124.8 (3)O24—C24—C27110.7 (3)
O13—C1—C2111.4 (3)C25—C24—C27110.9 (3)
C14—C2—C1107.5 (3)C23—C24—C27109.9 (3)
C14—C2—C3112.2 (3)O25—C25—C26111.9 (3)
C1—C2—C3112.0 (2)O25—C25—C24113.2 (3)
C14—C2—H2A108.4C26—C25—C24110.9 (3)
C1—C2—H2A108.4O25—C25—H25A106.8
C3—C2—H2A108.4C26—C25—H25A106.8
O3—C3—C2108.2 (2)C24—C25—H25A106.8
O3—C3—C4108.5 (2)O26—C26—C25109.9 (3)
C2—C3—C4113.1 (2)O26—C26—C29106.1 (3)
O3—C3—H3A109.0C25—C26—C29112.4 (3)
C2—C3—H3A109.0O26—C26—H26A109.5
C4—C3—H3A109.0C25—C26—H26A109.5
C3—C4—C15110.7 (3)C29—C26—H26A109.5
C3—C4—C5112.2 (2)C24—C27—H27A109.5
C15—C4—C5113.2 (3)C24—C27—H27B109.5
C3—C4—H4A106.8H27A—C27—H27B109.5
C15—C4—H4A106.8C24—C27—H27C109.5
C5—C4—H4A106.8H27A—C27—H27C109.5
O5—C5—C4111.1 (2)H27B—C27—H27C109.5
O5—C5—C6103.0 (2)O24—C28—H28A109.5
C4—C5—C6113.9 (2)O24—C28—H28B109.5
O5—C5—H5A109.5H28A—C28—H28B109.5
C4—C5—H5A109.5O24—C28—H28C109.5
C6—C5—H5A109.5H28A—C28—H28C109.5
O6—C6—C16109.3 (3)H28B—C28—H28C109.5
O6—C6—C7107.0 (3)C26—C29—H29A109.5
C16—C6—C7112.6 (3)C26—C29—H29B109.5
O6—C6—C5109.6 (3)H29A—C29—H29B109.5
C16—C6—C5109.9 (3)C26—C29—H29C109.5
C7—C6—C5108.4 (3)H29A—C29—H29C109.5
C8—C7—C6117.4 (3)H29B—C29—H29C109.5
C8—C7—H7A108.0O5—C30—O30108.7 (2)
C6—C7—H7A108.0O5—C30—C34105.3 (2)
C8—C7—H7B108.0O30—C30—C34110.5 (2)
C6—C7—H7B108.0O5—C30—H30A110.7
H7A—C7—H7B107.2O30—C30—H30A110.7
C9—C8—C17111.7 (3)C34—C30—H30A110.7
C9—C8—C7108.2 (3)O30—C31—C35107.1 (3)
C17—C8—C7112.9 (3)O30—C31—C32109.6 (3)
C9—C8—H8A107.9C35—C31—C32112.8 (3)
C17—C8—H8A107.9O30—C31—H31A109.1
C7—C8—H8A107.9C35—C31—H31A109.1
O9—C9—C8120.9 (4)C32—C31—H31A109.1
O9—C9—C10119.8 (4)C31—C32—C33112.3 (3)
C8—C9—C10119.3 (3)C31—C32—H32A109.2
C9—C10—C11109.9 (3)C33—C32—H32A109.2
C9—C10—C18109.7 (3)C31—C32—H32B109.2
C11—C10—C18115.0 (3)C33—C32—H32B109.2
C9—C10—H10A107.3H32A—C32—H32B107.9
C11—C10—H10A107.3N33—C33—C34110.3 (3)
C18—C10—H10A107.3N33—C33—C32115.9 (3)
O11—C11—C12109.3 (3)C34—C33—C32110.1 (3)
O11—C11—C10108.5 (3)N33—C33—H33A106.7
C12—C11—C10118.2 (3)C34—C33—H33A106.7
O11—C11—H11A106.8C32—C33—H33A106.7
C12—C11—H11A106.8O34—C34—C33109.0 (3)
C10—C11—H11A106.8O34—C34—C30111.4 (3)
O12—C12—C19112.7 (3)C33—C34—C30111.5 (3)
O12—C12—C11105.6 (3)O34—C34—H34A108.3
C19—C12—C11113.9 (3)C33—C34—H34A108.3
O12—C12—C13104.8 (3)C30—C34—H34A108.3
C19—C12—C13110.9 (3)C31—C35—H35A109.5
C11—C12—C13108.5 (3)C31—C35—H35B109.5
O13—C13—C20106.2 (3)H35A—C35—H35B109.5
O13—C13—C12108.1 (3)C31—C35—H35C109.5
C20—C13—C12115.5 (3)H35A—C35—H35C109.5
O13—C13—H13A108.9H35B—C35—H35C109.5
C20—C13—H13A108.9N33—C36—H36A109.5
C12—C13—H13A108.9N33—C36—H36B109.5
C2—C14—H14A109.5H36A—C36—H36B109.5
C2—C14—H14B109.5N33—C36—H36C109.5
H14A—C14—H14B109.5H36A—C36—H36C109.5
C2—C14—H14C109.5H36B—C36—H36C109.5
H14A—C14—H14C109.5N33—C37—H37A109.5
H14B—C14—H14C109.5N33—C37—H37B109.5
C4—C15—H15A109.5H37A—C37—H37B109.5
C4—C15—H15B109.5N33—C37—H37C109.5
H15A—C15—H15B109.5H37A—C37—H37C109.5
C4—C15—H15C109.5H37B—C37—H37C109.5
H15A—C15—H15C109.5O14—S1—C38106.4 (3)
H15B—C15—H15C109.5O14—S1—C39107.0 (2)
C6—C16—H16A109.5C38—S1—C3996.9 (3)
C6—C16—H16B109.5S1—C38—H38A109.5
H16A—C16—H16B109.5S1—C38—H38B109.5
C6—C16—H16C109.5H38A—C38—H38B109.5
H16A—C16—H16C109.5S1—C38—H38C109.5
H16B—C16—H16C109.5H38A—C38—H38C109.5
C8—C17—H17A109.5H38B—C38—H38C109.5
C8—C17—H17B109.5S1—C39—H39A109.5
H17A—C17—H17B109.5S1—C39—H39B109.5
C8—C17—H17C109.5H39A—C39—H39B109.5
H17A—C17—H17C109.5S1—C39—H39C109.5
H17B—C17—H17C109.5H39A—C39—H39C109.5
C10—C18—H18A109.5H39B—C39—H39C109.5
C10—C18—H18B109.5O15—S2—C41105.7 (5)
H18A—C18—H18B109.5O15—S2—C40103.7 (6)
C10—C18—H18C109.5C41—S2—C4099.7 (9)
H18A—C18—H18C109.5S2—C40—H40D109.5
H18B—C18—H18C109.5S2—C40—H40E109.5
C12—C19—H19A109.5H40D—C40—H40E109.5
C12—C19—H19B109.5S2—C40—H40F109.5
H19A—C19—H19B109.5H40D—C40—H40F109.5
C12—C19—H19C109.5H40E—C40—H40F109.5
H19A—C19—H19C109.5S2—C41—H41A109.5
H19B—C19—H19C109.5S2—C41—H41B109.5
C21—C20—C13112.9 (4)H41A—C41—H41B109.5
C21—C20—H20A109.0S2—C41—H41C109.5
C13—C20—H20A109.0H41A—C41—H41C109.5
C21—C20—H20B109.0H41B—C41—H41C109.5
C13—C20—H20B109.0H40A—C40'—H40B109.5
H20A—C20—H20B107.8H40A—C40'—H40C109.5
C20—C21—H21A109.5H40B—C40'—H40C109.5
C20—C21—H21B109.5H41D—C41'—H41E109.5
H21A—C21—H21B109.5H41D—C41'—H41F109.5
C20—C21—H21C109.5H41E—C41'—H41F109.5
H21A—C21—H21C109.5
C13—O13—C1—O1−7.9 (5)C19—C12—C13—O1350.4 (4)
C13—O13—C1—C2170.3 (3)C11—C12—C13—O13−75.4 (3)
O1—C1—C2—C1449.6 (4)O12—C12—C13—C2053.5 (4)
O13—C1—C2—C14−128.6 (3)C19—C12—C13—C20−68.4 (4)
O1—C1—C2—C3−74.1 (4)C11—C12—C13—C20165.8 (3)
O13—C1—C2—C3107.8 (3)O13—C13—C20—C2170.1 (4)
C22—O3—C3—C2−103.4 (3)C12—C13—C20—C21−170.1 (3)
C22—O3—C3—C4133.6 (3)C3—O3—C22—O26−83.3 (3)
C14—C2—C3—O361.1 (3)C3—O3—C22—C23151.0 (3)
C1—C2—C3—O3−178.0 (2)C26—O26—C22—O3−75.0 (3)
C14—C2—C3—C4−178.7 (3)C26—O26—C22—C2349.9 (4)
C1—C2—C3—C4−57.8 (3)O3—C22—C23—C2479.8 (4)
O3—C3—C4—C1549.2 (3)O26—C22—C23—C24−45.6 (4)
C2—C3—C4—C15−70.8 (3)C28—O24—C24—C25−171.9 (3)
O3—C3—C4—C5−78.2 (3)C28—O24—C24—C23−55.2 (4)
C2—C3—C4—C5161.7 (2)C28—O24—C24—C2768.7 (4)
C30—O5—C5—C4−105.4 (3)C22—C23—C24—O24−66.5 (4)
C30—O5—C5—C6132.3 (3)C22—C23—C24—C2548.4 (4)
C3—C4—C5—O5157.8 (2)C22—C23—C24—C27169.1 (3)
C15—C4—C5—O531.6 (4)O24—C24—C25—O25−61.2 (3)
C3—C4—C5—C6−86.4 (3)C23—C24—C25—O25178.1 (3)
C15—C4—C5—C6147.4 (3)C27—C24—C25—O2558.0 (4)
O5—C5—C6—O6163.7 (2)O24—C24—C25—C2665.4 (3)
C4—C5—C6—O643.3 (3)C23—C24—C25—C26−55.2 (4)
O5—C5—C6—C16−76.2 (3)C27—C24—C25—C26−175.3 (3)
C4—C5—C6—C16163.4 (3)C22—O26—C26—C25−58.2 (3)
O5—C5—C6—C747.3 (3)C22—O26—C26—C29−180.0 (3)
C4—C5—C6—C7−73.1 (3)O25—C25—C26—O26−171.7 (3)
O6—C6—C7—C827.4 (4)C24—C25—C26—O2660.9 (4)
C16—C6—C7—C8−92.7 (4)O25—C25—C26—C29−53.9 (4)
C5—C6—C7—C8145.5 (3)C24—C25—C26—C29178.8 (3)
C6—C7—C8—C9−165.1 (3)C5—O5—C30—O30−74.8 (3)
C6—C7—C8—C1770.7 (5)C5—O5—C30—C34166.8 (2)
C17—C8—C9—O99.0 (5)C31—O30—C30—O5−176.7 (3)
C7—C8—C9—O9−115.9 (4)C31—O30—C30—C34−61.7 (3)
C17—C8—C9—C10−171.5 (3)C30—O30—C31—C35−176.0 (3)
C7—C8—C9—C1063.6 (4)C30—O30—C31—C3261.3 (4)
O9—C9—C10—C11−134.4 (4)O30—C31—C32—C33−55.0 (4)
C8—C9—C10—C1146.0 (4)C35—C31—C32—C33−174.2 (3)
O9—C9—C10—C18−6.9 (5)C37—N33—C33—C3458.7 (4)
C8—C9—C10—C18173.5 (3)C36—N33—C33—C34−175.7 (3)
C9—C10—C11—O1153.6 (4)C37—N33—C33—C32−67.3 (4)
C18—C10—C11—O11−70.9 (4)C36—N33—C33—C3258.3 (4)
C9—C10—C11—C12178.6 (3)C31—C32—C33—N33176.4 (3)
C18—C10—C11—C1254.2 (4)C31—C32—C33—C3450.4 (4)
O11—C11—C12—O1240.4 (4)N33—C33—C34—O3457.6 (3)
C10—C11—C12—O12−84.3 (4)C32—C33—C34—O34−173.3 (3)
O11—C11—C12—C19164.5 (3)N33—C33—C34—C30−179.0 (3)
C10—C11—C12—C1939.9 (4)C32—C33—C34—C30−49.9 (4)
O11—C11—C12—C13−71.4 (3)O5—C30—C34—O34−65.0 (3)
C10—C11—C12—C13163.9 (3)O30—C30—C34—O34177.9 (2)
C1—O13—C13—C20−117.1 (3)O5—C30—C34—C33173.0 (3)
C1—O13—C13—C12118.3 (3)O30—C30—C34—C3355.8 (3)
O12—C12—C13—O13172.3 (3)
D—H···AD—HH···AD···AD—H···A
O6—H6A···O7Wi0.822.002.810 (4)170
O7W—H7C···O26ii0.85 (1)2.07 (2)2.888 (4)163 (4)
O7W—H7D···N330.84 (1)2.04 (2)2.863 (4)166 (5)
O11—H11B···O120.822.072.575 (4)120
O12—H12A···O150.821.852.602 (8)152
O12—H12A···O15′0.822.042.667 (7)134
O25—H25B···O11iii0.822.042.838 (4)166
O34—H34B···O140.821.942.747 (4)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H6A⋯O7Wi0.822.002.810 (4)170
O7W—H7C⋯O26ii0.85 (1)2.07 (2)2.888 (4)163 (4)
O7W—H7D⋯N330.84 (1)2.04 (2)2.863 (4)166 (5)
O11—H11B⋯O120.822.072.575 (4)120
O12—H12A⋯O150.821.852.602 (8)152
O12—H12A⋯O15′0.822.042.667 (7)134
O25—H25B⋯O11iii0.822.042.838 (4)166
O34—H34B⋯O140.821.942.747 (4)170

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Solid-state investigations of erythromycin A dihydrate: structure, NMR spectroscopy, and hygroscopicity.

Authors:  G A Stephenson; J G Stowell; P H Toma; R R Pfeiffer; S R Byrn
Journal:  J Pharm Sci       Date:  1997-11       Impact factor: 3.534

3.  Influence of solvents on the variety of crystalline forms of erythromycin.

Authors:  Sabiruddin Mirza; Inna Miroshnyk; Jyrki Heinämäki; Leena Christiansen; Milja Karjalainen; Jouko Yliruusi
Journal:  AAPS PharmSci       Date:  2003

4.  Free transport of water and CO2 in nonporous hydrophobic clarithromycin form II crystals.

Authors:  Jian Tian; Praveen K Thallapally; Scott J Dalgarno; Jerry L Atwood
Journal:  J Am Chem Soc       Date:  2009-09-23       Impact factor: 15.419

5.  Crystallographic characterization of several erythromycin A solvates: the environment of the solvent molecules in the crystal lattice.

Authors:  Rodger Henry; Geoff G Z Zhang
Journal:  J Pharm Sci       Date:  2007-05       Impact factor: 3.534

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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