| Literature DB >> 22412589 |
Augusto Rivera, Derly Marcela González, Jaime Ríos-Motta, Karla Fejfarová, Michal Dušek.
Abstract
In the mol-ecule of the title compound, C(20)H(26)N(2)O(2), the 1,3-diazinane ring adopts a slightly distorted chair conformation and the hy-droxy-benzyl substituents occupy equatorial positions on theEntities:
Year: 2012 PMID: 22412589 PMCID: PMC3295478 DOI: 10.1107/S1600536812005284
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H26N2O2 | |
| Monoclinic, | Cu |
| Hall symbol: -C 2yc | Cell parameters from 10886 reflections |
| θ = 3.0–67.0° | |
| µ = 0.62 mm−1 | |
| β = 107.936 (2)° | Prism, colourless |
| 0.3 × 0.14 × 0.07 mm | |
| Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector | 3210 independent reflections |
| Radiation source: Enhance Ultra (Cu) X-ray Source | 2750 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.3784 pixels mm-1 | θmax = 67.1°, θmin = 3.0° |
| Rotation method data acquisition using ω scans | |
| Absorption correction: multi-scan ( | |
| 20724 measured reflections |
| Refinement on | H atoms treated by a mixture of independent and constrained refinement |
| Weighting scheme based on measured s.u.'s | |
| (Δ/σ)max = 0.003 | |
| Δρmax = 0.15 e Å−3 | |
| 3210 reflections | Δρmin = −0.14 e Å−3 |
| 224 parameters | Extinction correction: B–C type 1 Lorentzian isotropic (Becker & Coppens, 1974) |
| 0 restraints | Extinction coefficient: 900 (300) |
| 98 constraints |
| Experimental. CrysAlis PRO (Agilent Technologies, 2010) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Refinement. The refinement was carried out against all reflections. The conventional
|
| O1 | 0.06464 (3) | 0.07051 (9) | 0.66310 (8) | 0.0302 (3) | |
| O2 | 0.22184 (3) | −0.05521 (9) | 0.85547 (8) | 0.0307 (3) | |
| N1 | 0.09336 (3) | −0.12594 (9) | 0.55120 (8) | 0.0253 (3) | |
| N2 | 0.17352 (3) | −0.14744 (9) | 0.63781 (8) | 0.0243 (3) | |
| C1 | 0.13773 (4) | −0.09468 (12) | 0.54144 (10) | 0.0246 (4) | |
| C2 | 0.08708 (4) | −0.27558 (12) | 0.55476 (12) | 0.0312 (4) | |
| C3 | 0.12437 (4) | −0.33754 (12) | 0.65145 (12) | 0.0325 (4) | |
| C4 | 0.17000 (4) | −0.29827 (12) | 0.64228 (11) | 0.0287 (4) | |
| C5 | 0.05832 (4) | −0.06437 (12) | 0.45500 (11) | 0.0277 (4) | |
| C6 | 0.05613 (4) | 0.08973 (12) | 0.46498 (10) | 0.0251 (4) | |
| C7 | 0.05753 (4) | 0.14970 (12) | 0.56815 (10) | 0.0247 (4) | |
| C8 | 0.05113 (4) | 0.29077 (12) | 0.57775 (11) | 0.0285 (4) | |
| C9 | 0.04476 (4) | 0.37139 (13) | 0.48171 (12) | 0.0329 (4) | |
| C10 | 0.04482 (4) | 0.31518 (13) | 0.37985 (12) | 0.0347 (4) | |
| C11 | 0.05025 (4) | 0.17415 (13) | 0.37139 (11) | 0.0307 (4) | |
| C12 | 0.05171 (5) | 0.35190 (14) | 0.68853 (13) | 0.0404 (5) | |
| C13 | 0.21697 (4) | −0.10533 (12) | 0.62478 (10) | 0.0274 (4) | |
| C14 | 0.25656 (4) | −0.14837 (11) | 0.72318 (10) | 0.0244 (4) | |
| C15 | 0.25775 (4) | −0.11617 (11) | 0.83352 (10) | 0.0239 (4) | |
| C16 | 0.29572 (4) | −0.14483 (11) | 0.92540 (10) | 0.0254 (4) | |
| C17 | 0.33194 (4) | −0.20947 (11) | 0.90430 (11) | 0.0272 (4) | |
| C18 | 0.33074 (4) | −0.24696 (13) | 0.79600 (11) | 0.0291 (4) | |
| C19 | 0.29302 (4) | −0.21597 (12) | 0.70615 (11) | 0.0278 (4) | |
| C20 | 0.29665 (5) | −0.10650 (14) | 1.04259 (11) | 0.0353 (5) | |
| H1a | 0.140383 | −0.134347 | 0.473167 | 0.0295* | |
| H1b | 0.14095 | 0.003083 | 0.536267 | 0.0295* | |
| H2a | 0.087705 | −0.315591 | 0.484768 | 0.0374* | |
| H2b | 0.058548 | −0.294608 | 0.565453 | 0.0374* | |
| H3a | 0.121489 | −0.435894 | 0.64972 | 0.039* | |
| H3b | 0.121758 | −0.30502 | 0.72196 | 0.039* | |
| H4a | 0.193116 | −0.33274 | 0.70673 | 0.0345* | |
| H4b | 0.173643 | −0.337606 | 0.574906 | 0.0345* | |
| H5a | 0.029635 | −0.103489 | 0.45048 | 0.0332* | |
| H5b | 0.064148 | −0.087548 | 0.385863 | 0.0332* | |
| H9 | 0.040193 | 0.468584 | 0.48637 | 0.0395* | |
| H10 | 0.04114 | 0.37325 | 0.315261 | 0.0416* | |
| H11 | 0.049941 | 0.134735 | 0.30046 | 0.0368* | |
| H12a | 0.033234 | 0.297621 | 0.721132 | 0.0605* | |
| H12b | 0.081968 | 0.353116 | 0.73863 | 0.0605* | |
| H12c | 0.040286 | 0.44419 | 0.676862 | 0.0605* | |
| H13a | 0.217355 | −0.007301 | 0.6158 | 0.0329* | |
| H13b | 0.219925 | −0.143722 | 0.556384 | 0.0329* | |
| H17 | 0.358424 | −0.228617 | 0.966195 | 0.0327* | |
| H18 | 0.355763 | −0.293886 | 0.783351 | 0.0349* | |
| H19 | 0.292099 | −0.241654 | 0.631023 | 0.0334* | |
| H20a | 0.272699 | −0.152761 | 1.060976 | 0.053* | |
| H20b | 0.324928 | −0.133316 | 1.095101 | 0.053* | |
| H20c | 0.29292 | −0.008831 | 1.046816 | 0.053* | |
| H1 | 0.0756 (5) | −0.0090 (18) | 0.6433 (14) | 0.0454* | |
| H2 | 0.1987 (6) | −0.0618 (17) | 0.7916 (16) | 0.0461* |
| O1 | 0.0322 (5) | 0.0307 (5) | 0.0310 (5) | −0.0004 (3) | 0.0144 (4) | 0.0017 (3) |
| O2 | 0.0253 (4) | 0.0363 (5) | 0.0309 (5) | 0.0075 (3) | 0.0093 (4) | −0.0010 (4) |
| N1 | 0.0202 (5) | 0.0235 (5) | 0.0300 (6) | −0.0009 (4) | 0.0046 (4) | 0.0006 (4) |
| N2 | 0.0197 (5) | 0.0255 (5) | 0.0262 (5) | 0.0013 (3) | 0.0051 (4) | 0.0026 (4) |
| C1 | 0.0215 (6) | 0.0258 (6) | 0.0251 (6) | 0.0006 (4) | 0.0051 (5) | 0.0010 (4) |
| C2 | 0.0264 (6) | 0.0243 (6) | 0.0404 (7) | −0.0037 (4) | 0.0068 (5) | −0.0013 (5) |
| C3 | 0.0314 (7) | 0.0241 (6) | 0.0399 (8) | −0.0020 (5) | 0.0080 (5) | 0.0042 (5) |
| C4 | 0.0288 (6) | 0.0253 (6) | 0.0298 (7) | 0.0035 (4) | 0.0057 (5) | 0.0017 (5) |
| C5 | 0.0206 (6) | 0.0274 (6) | 0.0314 (7) | −0.0003 (4) | 0.0025 (5) | −0.0023 (5) |
| C6 | 0.0145 (5) | 0.0290 (6) | 0.0287 (6) | −0.0006 (4) | 0.0022 (4) | −0.0007 (5) |
| C7 | 0.0157 (5) | 0.0287 (6) | 0.0295 (7) | −0.0018 (4) | 0.0066 (5) | 0.0017 (5) |
| C8 | 0.0178 (6) | 0.0294 (6) | 0.0386 (7) | −0.0017 (4) | 0.0089 (5) | −0.0040 (5) |
| C9 | 0.0226 (6) | 0.0255 (6) | 0.0467 (8) | 0.0003 (4) | 0.0048 (5) | 0.0013 (5) |
| C10 | 0.0296 (7) | 0.0341 (7) | 0.0348 (7) | 0.0005 (5) | 0.0017 (5) | 0.0087 (5) |
| C11 | 0.0252 (6) | 0.0355 (7) | 0.0268 (7) | 0.0007 (5) | 0.0016 (5) | 0.0012 (5) |
| C12 | 0.0392 (8) | 0.0369 (7) | 0.0498 (9) | 0.0007 (5) | 0.0210 (6) | −0.0090 (6) |
| C13 | 0.0225 (6) | 0.0332 (6) | 0.0265 (6) | 0.0010 (5) | 0.0075 (5) | 0.0032 (5) |
| C14 | 0.0204 (6) | 0.0258 (6) | 0.0267 (6) | −0.0002 (4) | 0.0068 (5) | 0.0021 (4) |
| C15 | 0.0221 (6) | 0.0217 (5) | 0.0291 (6) | 0.0008 (4) | 0.0097 (5) | 0.0010 (4) |
| C16 | 0.0251 (6) | 0.0226 (6) | 0.0278 (6) | −0.0018 (4) | 0.0070 (5) | 0.0010 (4) |
| C17 | 0.0222 (6) | 0.0265 (6) | 0.0300 (7) | 0.0002 (4) | 0.0037 (5) | 0.0030 (5) |
| C18 | 0.0222 (6) | 0.0304 (6) | 0.0350 (7) | 0.0038 (5) | 0.0093 (5) | 0.0003 (5) |
| C19 | 0.0257 (6) | 0.0306 (6) | 0.0285 (7) | 0.0009 (4) | 0.0101 (5) | −0.0006 (5) |
| C20 | 0.0334 (7) | 0.0427 (7) | 0.0278 (7) | 0.0019 (5) | 0.0061 (5) | −0.0009 (5) |
| O1—C7 | 1.3704 (15) | C8—C9 | 1.3918 (19) |
| O1—H1 | 0.910 (18) | C8—C12 | 1.497 (2) |
| O2—C15 | 1.3701 (16) | C9—C10 | 1.382 (2) |
| O2—H2 | 0.898 (16) | C9—H9 | 0.96 |
| N1—C1 | 1.4619 (16) | C10—C11 | 1.3895 (18) |
| N1—C2 | 1.4703 (15) | C10—H10 | 0.96 |
| N1—C5 | 1.4784 (14) | C11—H11 | 0.96 |
| N2—C1 | 1.4591 (13) | C12—H12a | 0.96 |
| N2—C4 | 1.4727 (15) | C12—H12b | 0.96 |
| N2—C13 | 1.4753 (16) | C12—H12c | 0.96 |
| C1—H1a | 0.96 | C13—C14 | 1.5084 (14) |
| C1—H1b | 0.96 | C13—H13a | 0.96 |
| C2—C3 | 1.5191 (16) | C13—H13b | 0.96 |
| C2—H2a | 0.96 | C14—C15 | 1.3983 (18) |
| C2—H2b | 0.96 | C14—C19 | 1.3879 (18) |
| C3—C4 | 1.515 (2) | C15—C16 | 1.4000 (14) |
| C3—H3a | 0.96 | C16—C17 | 1.3894 (18) |
| C3—H3b | 0.96 | C16—C20 | 1.4976 (19) |
| C4—H4a | 0.96 | C17—C18 | 1.3861 (19) |
| C4—H4b | 0.96 | C17—H17 | 0.96 |
| C5—C6 | 1.5066 (16) | C18—C19 | 1.3861 (15) |
| C5—H5a | 0.96 | C18—H18 | 0.96 |
| C5—H5b | 0.96 | C19—H19 | 0.96 |
| C6—C7 | 1.3990 (18) | C20—H20a | 0.96 |
| C6—C11 | 1.3903 (18) | C20—H20b | 0.96 |
| C7—C8 | 1.3964 (16) | C20—H20c | 0.96 |
| C7—O1—H1 | 102.6 (11) | C9—C8—C12 | 121.73 (11) |
| C15—O2—H2 | 106.3 (13) | C8—C9—C10 | 121.71 (12) |
| C1—N1—C2 | 110.32 (9) | C8—C9—H9 | 119.1442 |
| C1—N1—C5 | 109.53 (10) | C10—C9—H9 | 119.1447 |
| C2—N1—C5 | 110.63 (8) | C9—C10—C11 | 119.64 (13) |
| C1—N2—C4 | 109.49 (8) | C9—C10—H10 | 120.1785 |
| C1—N2—C13 | 108.15 (9) | C11—C10—H10 | 120.1783 |
| C4—N2—C13 | 111.25 (9) | C6—C11—C10 | 120.44 (13) |
| N1—C1—N2 | 111.48 (10) | C6—C11—H11 | 119.78 |
| N1—C1—H1a | 109.4714 | C10—C11—H11 | 119.7804 |
| N1—C1—H1b | 109.4721 | C8—C12—H12a | 109.4711 |
| N2—C1—H1a | 109.4702 | C8—C12—H12b | 109.4722 |
| N2—C1—H1b | 109.4711 | C8—C12—H12c | 109.4711 |
| H1a—C1—H1b | 107.3846 | H12a—C12—H12b | 109.4712 |
| N1—C2—C3 | 109.82 (9) | H12a—C12—H12c | 109.471 |
| N1—C2—H2a | 109.471 | H12b—C12—H12c | 109.4707 |
| N1—C2—H2b | 109.4726 | N2—C13—C14 | 112.79 (10) |
| C3—C2—H2a | 109.4711 | N2—C13—H13a | 109.4717 |
| C3—C2—H2b | 109.4718 | N2—C13—H13b | 109.4711 |
| H2a—C2—H2b | 109.1181 | C14—C13—H13a | 109.4713 |
| C2—C3—C4 | 110.58 (11) | C14—C13—H13b | 109.4711 |
| C2—C3—H3a | 109.4709 | H13a—C13—H13b | 105.9345 |
| C2—C3—H3b | 109.4706 | C13—C14—C15 | 120.18 (11) |
| C4—C3—H3a | 109.4712 | C13—C14—C19 | 121.00 (11) |
| C4—C3—H3b | 109.4715 | C15—C14—C19 | 118.79 (10) |
| H3a—C3—H3b | 108.3382 | O2—C15—C14 | 121.16 (9) |
| N2—C4—C3 | 109.68 (10) | O2—C15—C16 | 117.68 (11) |
| N2—C4—H4a | 109.4709 | C14—C15—C16 | 121.16 (11) |
| N2—C4—H4b | 109.4709 | C15—C16—C17 | 118.13 (12) |
| C3—C4—H4a | 109.4718 | C15—C16—C20 | 120.24 (11) |
| C3—C4—H4b | 109.4711 | C17—C16—C20 | 121.63 (10) |
| H4a—C4—H4b | 109.2658 | C16—C17—C18 | 121.56 (10) |
| N1—C5—C6 | 112.15 (9) | C16—C17—H17 | 119.2196 |
| N1—C5—H5a | 109.4713 | C18—C17—H17 | 119.2211 |
| N1—C5—H5b | 109.4705 | C17—C18—C19 | 119.30 (12) |
| C6—C5—H5a | 109.4715 | C17—C18—H18 | 120.3511 |
| C6—C5—H5b | 109.4715 | C19—C18—H18 | 120.3499 |
| H5a—C5—H5b | 106.6581 | C14—C19—C18 | 120.99 (12) |
| C5—C6—C7 | 120.05 (11) | C14—C19—H19 | 119.5056 |
| C5—C6—C11 | 121.03 (11) | C18—C19—H19 | 119.5079 |
| C7—C6—C11 | 118.83 (11) | C16—C20—H20a | 109.4711 |
| O1—C7—C6 | 120.60 (10) | C16—C20—H20b | 109.4716 |
| O1—C7—C8 | 117.86 (11) | C16—C20—H20c | 109.4707 |
| C6—C7—C8 | 121.54 (11) | H20a—C20—H20b | 109.4715 |
| C7—C8—C9 | 117.77 (12) | H20a—C20—H20c | 109.4703 |
| C7—C8—C12 | 120.50 (12) | H20b—C20—H20c | 109.4722 |
| H··· | ||||
| O1—H1···N1 | 0.910 (18) | 1.818 (19) | 2.6771 (14) | 156.3 (16) |
| O2—H2···N2 | 0.898 (16) | 2.013 (18) | 2.8123 (12) | 147.6 (17) |
| C17—H17··· | 0.96 | 2.73 | 3.5577 (14) | 144 |
Hydrogen-bond geometry (Å, °)
Cg2 is the centroid of the C6–C11 aromatic ring.
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯N1 | 0.910 (18) | 1.818 (19) | 2.6771 (14) | 156.3 (16) |
| O2—H2⋯N2 | 0.898 (16) | 2.013 (18) | 2.8123 (12) | 147.6 (17) |
| C17—H17⋯ | 0.96 | 2.73 | 3.5577 (14) | 144 |
Symmetry code: (i) .