Literature DB >> 22412576

(3,6-Dimethyl-1,2,4,5-tetra-zine-1,4-di-yl)bis-[(morpholin-4-yl)methanone].

Na-Bo Sun, Yan-Mei Guo, Guo-Wu Rao.   

Abstract

In the title mol-ecule, C(14)H(22)N(6)O(4), the amide-substituted N atoms of the tetra-zine ring deviate from the approximate plane of the four other atoms in the ring by 0.160 (2) and 0.243 (2) Å, forming a slight boat conformation. The morpholine rings are in chair conformations.

Entities:  

Year:  2012        PMID: 22412576      PMCID: PMC3295465          DOI: 10.1107/S1600536812004849

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For chemical reactions of 1,2,4,5-tetra­zine derivatives, see: Domingo et al. (2009 ▶); Lorincz et al. (2010 ▶). For their bio­logical activities, see: Devaraj et al. (2009 ▶); Eremeev et al. (1978 ▶, 1980 ▶); Han et al. (2010 ▶); Neunhoeffer (1984 ▶); Sauer (1996 ▶). For anti-n class="Disease">tumor activity of 1,2,4,5-tetra­zine derivatives, see: Hu et al. (2002 ▶, 2004 ▶); Rao & Hu, (2005 ▶, 2006 ▶). For details of the synthesis, see: Hu et al. (2004 ▶); Skorianetz & Kováts (1970 ▶, 1971 ▶); Sun et al. (2003 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C14H22N6O4 M = 338.38 Monoclinic, a = 15.285 (3) Å b = 6.5977 (14) Å c = 16.729 (4) Å β = 106.576 (3)° V = 1617.0 (6) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.55 × 0.42 × 0.28 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.944, T max = 0.971 9248 measured reflections 3714 independent reflections 2908 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.142 S = 1.03 3714 reflections 220 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812004849/lh5412sup1.cif Supplementary material file. DOI: 10.1107/S1600536812004849/lh5412Isup2.cdx Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004849/lh5412Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536812004849/lh5412Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H22N6O4F(000) = 720
Mr = 338.38Dx = 1.390 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6920 reflections
a = 15.285 (3) Åθ = 2.9–28.2°
b = 6.5977 (14) ŵ = 0.10 mm1
c = 16.729 (4) ÅT = 298 K
β = 106.576 (3)°Block, yellow
V = 1617.0 (6) Å30.55 × 0.42 × 0.28 mm
Z = 4
Bruker SMART CCD diffractometer3714 independent reflections
Radiation source: fine-focus sealed tube2908 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
φ and ω scansθmax = 28.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −15→20
Tmin = 0.944, Tmax = 0.971k = −8→8
9248 measured reflectionsl = −18→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.142w = 1/[σ2(Fo2) + (0.0823P)2 + 0.2523P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3714 reflectionsΔρmax = 0.27 e Å3
220 parametersΔρmin = −0.27 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.036 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N20.68618 (8)0.70860 (18)0.11259 (7)0.0374 (3)
N40.59388 (8)0.60296 (19)0.19430 (7)0.0409 (3)
N50.55633 (9)0.43942 (18)0.13981 (8)0.0450 (3)
N10.66936 (9)0.51243 (19)0.07644 (8)0.0456 (3)
O40.49306 (9)0.2853 (2)0.41742 (7)0.0586 (3)
O30.74085 (9)0.7091 (2)−0.18200 (7)0.0620 (4)
N60.53166 (9)0.5633 (2)0.30490 (8)0.0444 (3)
C60.59824 (9)0.3973 (2)0.08605 (8)0.0359 (3)
N30.75197 (8)0.57709 (19)−0.01932 (7)0.0416 (3)
O10.75909 (9)0.27148 (18)0.04345 (9)0.0643 (4)
C30.64652 (9)0.7449 (2)0.16842 (8)0.0333 (3)
O20.48046 (10)0.8161 (2)0.21322 (9)0.0764 (5)
C40.72971 (10)0.4435 (2)0.03193 (8)0.0397 (3)
C50.52962 (10)0.6716 (2)0.23773 (9)0.0415 (3)
C110.59485 (10)0.3983 (2)0.33971 (10)0.0461 (4)
H11A0.64050.44420.38950.055*
H11B0.62580.35490.29940.055*
C120.54193 (11)0.2249 (3)0.36082 (10)0.0492 (4)
H12A0.49940.17380.31010.059*
H12B0.58360.11610.38540.059*
C70.82145 (11)0.5206 (3)−0.06011 (10)0.0490 (4)
H7A0.84560.3874−0.04130.059*
H7B0.87140.6170−0.04550.059*
C100.70416 (11)0.7647 (2)−0.05175 (9)0.0461 (4)
H10A0.74530.8788−0.03500.055*
H10B0.65330.7839−0.02870.055*
C140.47410 (12)0.6227 (3)0.35760 (11)0.0531 (4)
H14A0.42790.71790.32780.064*
H14B0.51110.68890.40760.064*
C10.66582 (12)0.9416 (3)0.21394 (11)0.0535 (4)
H1A0.68750.91640.27280.080*
H1B0.61091.02080.20200.080*
H1C0.71151.01430.19630.080*
C130.42906 (12)0.4385 (3)0.38095 (11)0.0548 (4)
H13A0.39580.47740.42000.066*
H13B0.38540.38470.33150.066*
C20.56523 (12)0.2236 (3)0.02845 (12)0.0594 (5)
H2A0.55710.2667−0.02800.089*
H2B0.50810.17610.03450.089*
H2C0.60930.11590.04180.089*
C90.66960 (12)0.7561 (3)−0.14556 (10)0.0588 (5)
H9A0.62220.6540−0.16180.071*
H9B0.64290.8858−0.16660.071*
C80.77950 (13)0.5188 (3)−0.15316 (10)0.0581 (5)
H8A0.82590.4854−0.18030.070*
H8B0.73260.4153−0.16780.070*
U11U22U33U12U13U23
N20.0443 (6)0.0343 (6)0.0378 (6)−0.0095 (5)0.0183 (5)−0.0074 (5)
N40.0480 (7)0.0397 (7)0.0428 (6)−0.0052 (5)0.0255 (5)−0.0037 (5)
N50.0469 (7)0.0330 (6)0.0625 (8)−0.0085 (5)0.0278 (6)−0.0075 (5)
N10.0601 (8)0.0379 (7)0.0506 (7)−0.0152 (6)0.0346 (6)−0.0145 (5)
O40.0659 (7)0.0694 (8)0.0489 (6)0.0032 (6)0.0302 (6)0.0145 (6)
O30.0741 (8)0.0787 (9)0.0390 (6)0.0023 (7)0.0255 (6)0.0062 (6)
N60.0515 (7)0.0449 (7)0.0471 (7)0.0098 (6)0.0306 (6)0.0054 (5)
C60.0375 (7)0.0288 (7)0.0417 (7)−0.0002 (5)0.0119 (6)−0.0014 (5)
N30.0471 (7)0.0461 (7)0.0390 (6)0.0091 (5)0.0239 (5)0.0036 (5)
O10.0768 (8)0.0459 (7)0.0819 (9)0.0174 (6)0.0417 (7)0.0147 (6)
C30.0353 (6)0.0348 (7)0.0297 (6)−0.0013 (5)0.0089 (5)−0.0013 (5)
O20.0777 (9)0.0787 (9)0.0906 (10)0.0378 (8)0.0525 (8)0.0386 (8)
C40.0438 (7)0.0405 (8)0.0376 (7)0.0007 (6)0.0163 (6)−0.0037 (6)
C50.0431 (7)0.0416 (8)0.0456 (8)0.0033 (6)0.0221 (6)0.0017 (6)
C110.0434 (8)0.0514 (9)0.0468 (8)0.0064 (7)0.0182 (6)0.0062 (7)
C120.0541 (9)0.0496 (9)0.0457 (8)0.0062 (7)0.0173 (7)0.0079 (7)
C70.0487 (8)0.0588 (10)0.0483 (8)0.0086 (7)0.0278 (7)0.0008 (7)
C100.0564 (9)0.0445 (8)0.0424 (8)0.0095 (7)0.0223 (7)0.0053 (6)
C140.0653 (10)0.0531 (10)0.0544 (9)0.0064 (8)0.0386 (8)−0.0022 (7)
C10.0623 (10)0.0481 (9)0.0552 (9)−0.0113 (8)0.0248 (8)−0.0196 (7)
C130.0541 (9)0.0674 (11)0.0531 (9)0.0012 (8)0.0316 (8)0.0028 (8)
C20.0529 (9)0.0473 (9)0.0776 (12)−0.0106 (7)0.0179 (9)−0.0261 (8)
C90.0598 (10)0.0707 (12)0.0452 (9)0.0083 (9)0.0138 (8)0.0096 (8)
C80.0704 (11)0.0663 (11)0.0470 (9)−0.0035 (9)0.0318 (8)−0.0119 (8)
N2—C31.2730 (17)C11—H11B0.9700
N2—N11.4207 (16)C12—H12A0.9700
N4—C31.3821 (17)C12—H12B0.9700
N4—N51.4235 (17)C7—C81.505 (2)
N4—C51.4509 (17)C7—H7A0.9700
N5—C61.2748 (18)C7—H7B0.9700
N1—C61.3728 (17)C10—C91.507 (2)
N1—C41.4155 (17)C10—H10A0.9700
O4—C131.418 (2)C10—H10B0.9700
O4—C121.4201 (19)C14—C131.502 (2)
O3—C81.413 (2)C14—H14A0.9700
O3—C91.426 (2)C14—H14B0.9700
N6—C51.3245 (19)C1—H1A0.9600
N6—C111.4620 (19)C1—H1B0.9600
N6—C141.4653 (17)C1—H1C0.9600
C6—C21.490 (2)C13—H13A0.9700
N3—C41.3392 (18)C13—H13B0.9700
N3—C101.4609 (19)C2—H2A0.9600
N3—C71.4650 (17)C2—H2B0.9600
O1—C41.2158 (18)C2—H2C0.9600
C3—C11.4911 (19)C9—H9A0.9700
O2—C51.2104 (19)C9—H9B0.9700
C11—C121.500 (2)C8—H8A0.9700
C11—H11A0.9700C8—H8B0.9700
C3—N2—N1114.67 (11)C8—C7—H7B109.8
C3—N4—N5118.51 (11)H7A—C7—H7B108.2
C3—N4—C5118.88 (12)N3—C10—C9110.14 (13)
N5—N4—C5110.52 (11)N3—C10—H10A109.6
C6—N5—N4115.15 (11)C9—C10—H10A109.6
C6—N1—C4122.73 (12)N3—C10—H10B109.6
C6—N1—N2120.49 (11)C9—C10—H10B109.6
C4—N1—N2116.78 (11)H10A—C10—H10B108.1
C13—O4—C12110.04 (12)N6—C14—C13109.79 (13)
C8—O3—C9110.07 (13)N6—C14—H14A109.7
C5—N6—C11126.36 (12)C13—C14—H14A109.7
C5—N6—C14119.56 (13)N6—C14—H14B109.7
C11—N6—C14113.66 (12)C13—C14—H14B109.7
N5—C6—N1122.43 (12)H14A—C14—H14B108.2
N5—C6—C2118.58 (13)C3—C1—H1A109.5
N1—C6—C2118.90 (13)C3—C1—H1B109.5
C4—N3—C10127.14 (12)H1A—C1—H1B109.5
C4—N3—C7118.76 (13)C3—C1—H1C109.5
C10—N3—C7113.26 (12)H1A—C1—H1C109.5
N2—C3—N4122.96 (12)H1B—C1—H1C109.5
N2—C3—C1118.17 (12)O4—C13—C14112.17 (14)
N4—C3—C1118.54 (12)O4—C13—H13A109.2
O1—C4—N3124.47 (13)C14—C13—H13A109.2
O1—C4—N1118.89 (13)O4—C13—H13B109.2
N3—C4—N1116.62 (13)C14—C13—H13B109.2
O2—C5—N6125.04 (13)H13A—C13—H13B107.9
O2—C5—N4121.32 (13)C6—C2—H2A109.5
N6—C5—N4113.63 (12)C6—C2—H2B109.5
N6—C11—C12108.81 (12)H2A—C2—H2B109.5
N6—C11—H11A109.9C6—C2—H2C109.5
C12—C11—H11A109.9H2A—C2—H2C109.5
N6—C11—H11B109.9H2B—C2—H2C109.5
C12—C11—H11B109.9O3—C9—C10111.70 (14)
H11A—C11—H11B108.3O3—C9—H9A109.3
O4—C12—C11111.39 (14)C10—C9—H9A109.3
O4—C12—H12A109.4O3—C9—H9B109.3
C11—C12—H12A109.4C10—C9—H9B109.3
O4—C12—H12B109.4H9A—C9—H9B107.9
C11—C12—H12B109.4O3—C8—C7111.07 (14)
H12A—C12—H12B108.0O3—C8—H8A109.4
N3—C7—C8109.40 (13)C7—C8—H8A109.4
N3—C7—H7A109.8O3—C8—H8B109.4
C8—C7—H7A109.8C7—C8—H8B109.4
N3—C7—H7B109.8H8A—C8—H8B108.0
C3—N4—N5—C623.26 (19)C11—N6—C5—O2−174.99 (17)
C5—N4—N5—C6165.46 (12)C14—N6—C5—O2−2.9 (3)
C3—N2—N1—C616.02 (19)C11—N6—C5—N44.4 (2)
C3—N2—N1—C4−163.17 (13)C14—N6—C5—N4176.51 (13)
N4—N5—C6—N1−5.6 (2)C3—N4—C5—O244.9 (2)
N4—N5—C6—C2177.96 (14)N5—N4—C5—O2−97.15 (18)
C4—N1—C6—N5164.79 (14)C3—N4—C5—N6−134.55 (14)
N2—N1—C6—N5−14.4 (2)N5—N4—C5—N683.42 (15)
C4—N1—C6—C2−18.8 (2)C5—N6—C11—C12−134.69 (16)
N2—N1—C6—C2162.09 (14)C14—N6—C11—C1252.82 (18)
N1—N2—C3—N42.27 (19)C13—O4—C12—C1161.50 (17)
N1—N2—C3—C1175.66 (13)N6—C11—C12—O4−57.44 (17)
N5—N4—C3—N2−22.2 (2)C4—N3—C7—C8117.84 (16)
C5—N4—C3—N2−161.22 (13)C10—N3—C7—C8−52.37 (18)
N5—N4—C3—C1164.45 (13)C4—N3—C10—C9−118.42 (16)
C5—N4—C3—C125.42 (19)C7—N3—C10—C950.80 (18)
C10—N3—C4—O1163.86 (16)C5—N6—C14—C13135.96 (16)
C7—N3—C4—O1−4.8 (2)C11—N6—C14—C13−50.99 (19)
C10—N3—C4—N1−17.6 (2)C12—O4—C13—C14−59.39 (18)
C7—N3—C4—N1173.67 (13)N6—C14—C13—O453.49 (19)
C6—N1—C4—O1−44.3 (2)C8—O3—C9—C1059.94 (19)
N2—N1—C4—O1134.89 (16)N3—C10—C9—O3−53.83 (19)
C6—N1—C4—N3137.12 (15)C9—O3—C8—C7−61.71 (18)
N2—N1—C4—N3−43.71 (18)N3—C7—C8—O357.37 (19)
D—H···AD—HH···AD···AD—H···A
C14—H14A···O20.972.372.758 (2)103
C1—H1B···O20.962.462.949 (2)111
C2—H2C···O10.962.502.919 (2)106
C7—H7A···O10.972.332.748 (2)105
C10—H10B···N10.972.472.881 (2)105
C10—H10B···N20.972.332.8640 (19)114
C11—H11B···N40.972.352.7787 (19)106
  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Development of a bioorthogonal and highly efficient conjugation method for quantum dots using tetrazine-norbornene cycloaddition.

Authors:  Hee-Sun Han; Neal K Devaraj; Jungmin Lee; Scott A Hilderbrand; Ralph Weissleder; Moungi G Bawendi
Journal:  J Am Chem Soc       Date:  2010-06-16       Impact factor: 15.419

3.  Computational study on the reactivity of tetrazines toward organometallic reagents.

Authors:  Krisztián Lorincz; András Kotschy; Jaana Tammiku-Taul; Lauri Sikk; Peeter Burk
Journal:  J Org Chem       Date:  2010-09-17       Impact factor: 4.354

4.  Synthesis, X-ray crystallographic analysis, and antitumor activity of 1-acyl-3,6-disubstituted phenyl-1,4-dihydro-1,2,4,5-tetrazines.

Authors:  Guo-Wu Rao; Wei-Xiao Hu
Journal:  Bioorg Med Chem Lett       Date:  2005-06-15       Impact factor: 2.823

5.  Synthesis, structure analysis, and antitumor activity of 3,6-disubstituted-1,4-dihydro-1,2,4,5-tetrazine derivatives.

Authors:  Guo-Wu Rao; Wei-Xiao Hu
Journal:  Bioorg Med Chem Lett       Date:  2006-05-18       Impact factor: 2.823

6.  Fast and sensitive pretargeted labeling of cancer cells through a tetrazine/trans-cyclooctene cycloaddition.

Authors:  Neal K Devaraj; Rabi Upadhyay; Jered B Haun; Scott A Hilderbrand; Ralph Weissleder
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

7.  Toward an understanding of the unexpected regioselective hetero-Diels-Alder reactions of asymmetric tetrazines with electron-rich ethylenes: a DFT study.

Authors:  Luis R Domingo; M Teresa Picher; José A Sáez
Journal:  J Org Chem       Date:  2009-04-03       Impact factor: 4.354

8.  Synthesis and antitumor activity of s-tetrazine derivatives.

Authors:  Wei-Xiao Hu; Guo-Wu Rao; Ya-Quan Sun
Journal:  Bioorg Med Chem Lett       Date:  2004-03-08       Impact factor: 2.823

  8 in total

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