Literature DB >> 22412549

rac-3-[(3-Chloro-anilino)(4-chloro-phenyl)meth-yl]thian-4-one.

Klaus Harms, M Saeed Abaee, Mohammad M Mojtahedi, A Wahid Mesbah.   

Abstract

In the title compound, C(18)H(17)Cl(2)NOS, the thio-pyran-one ring adopts a chair conformation, with the substituent in the axial position. The dihedral angle between the two benzene rings is 89.43 (1)°. In the crystal, mol-ecules form inversion dimers through inter-molecular N-H⋯O hydrogen bonds [graph set R(2) (2)(8)].

Entities:  

Year:  2012        PMID: 22412549      PMCID: PMC3295438          DOI: 10.1107/S1600536812004680

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation and spectroscopic characterization of a series of related compounds and the crystal structure of 3-[(phenyl­amino)(p-tol­yl)methly]dihydro-2H-thio­pyran-4(3H)-one, see: Abaee et al. (2012 ▶). For the crystal structures of related compounds, see: Guo et al. (2007 ▶); Fun et al. (2009 ▶); Harms et al. (2012 ▶). For patterns in hydrogen bonding, see: Bernstein et al. (1995 ▶). For defining the relative configuration of diastereomers, see: IUPAC (2012 ▶).

Experimental

Crystal data

C18H17Cl2NOS M = 366.29 Monoclinic, a = 11.2611 (8) Å b = 8.6686 (7) Å c = 18.0976 (12) Å β = 105.266 (8)° V = 1704.3 (2) Å3 Z = 4 Mo Kα radiation μ = 0.51 mm−1 T = 193 K 0.29 × 0.24 × 0.05 mm

Data collection

Stoe IPDS-1 image-plate diffractometer Absorption correction: integration X-RED32 (Stoe & Cie, 2006 ▶) T min = 0.890, T max = 0.978 15404 measured reflections 3134 independent reflections 1867 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.048 S = 0.64 3134 reflections 212 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.15 e Å−3 Data collection: EXPOSE (Stoe & Cie, 1994 ▶); cell refinement: CELL (Stoe & Cie, 1994 ▶); data reduction: X-RED32 (Stoe & Cie, 2006 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2007 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶), PLATON (Spek, 2009 ▶) and WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812004680/zs2176sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004680/zs2176Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812004680/zs2176Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H17Cl2NOSF(000) = 760
Mr = 366.29Dx = 1.428 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8000 reflections
a = 11.2611 (8) Åθ = 1.9–25°
b = 8.6686 (7) ŵ = 0.51 mm1
c = 18.0976 (12) ÅT = 193 K
β = 105.266 (8)°Plate, colourless
V = 1704.3 (2) Å30.29 × 0.24 × 0.05 mm
Z = 4
Stoe IPDS-1 image-plate diffractometer3134 independent reflections
Radiation source: fine-focus sealed tube1867 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
Detector resolution: 6.67 pixels mm-1θmax = 25.4°, θmin = 1.9°
ω scansh = −13→13
Absorption correction: integration X-RED32 (Stoe & Cie, 2006)k = −10→10
Tmin = 0.890, Tmax = 0.978l = −21→21
15404 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.048H atoms treated by a mixture of independent and constrained refinement
S = 0.64w = 1/[σ2(Fo2) + (0.0127P)2] where P = (Fo2 + 2Fc2)/3
3134 reflections(Δ/σ)max = 0.001
212 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.31042 (19)0.2357 (2)0.53806 (11)0.0272 (5)
H2A0.38600.29560.53990.033*
H2B0.27970.19390.48560.033*
C30.21227 (18)0.3451 (2)0.55471 (10)0.0238 (5)
H30.19460.42650.51410.029*
C40.09371 (19)0.2559 (2)0.54853 (11)0.0260 (5)
C50.10024 (19)0.1153 (2)0.59821 (11)0.0282 (5)
H5A0.01840.06530.58640.034*
H5B0.12180.14720.65270.034*
C60.19574 (19)−0.0013 (2)0.58604 (12)0.0308 (5)
H6A0.1703−0.03870.53250.037*
H6B0.1970−0.09100.62010.037*
C70.25464 (16)0.4273 (2)0.63362 (10)0.0213 (4)
H70.25990.34780.67440.026*
C90.15786 (17)0.6196 (2)0.70276 (11)0.0221 (4)
C100.23976 (18)0.5889 (2)0.77388 (11)0.0251 (4)
H100.30200.51290.77830.030*
C110.2297 (2)0.6703 (2)0.83810 (11)0.0288 (5)
C120.1428 (2)0.7834 (3)0.83454 (13)0.0365 (6)
H120.13730.83740.87920.044*
C130.06325 (19)0.8161 (3)0.76353 (13)0.0353 (5)
H130.00320.89480.75940.042*
C140.07008 (18)0.7357 (2)0.69860 (12)0.0277 (5)
H140.01450.75980.65070.033*
C150.38184 (17)0.4989 (2)0.64544 (10)0.0215 (4)
C160.48456 (17)0.4248 (2)0.69185 (10)0.0240 (4)
H160.47380.33330.71820.029*
C170.60194 (19)0.4826 (2)0.70002 (11)0.0266 (5)
H170.67140.43050.73120.032*
C180.61680 (18)0.6159 (2)0.66259 (10)0.0242 (4)
C190.51657 (18)0.6941 (2)0.61697 (11)0.0278 (5)
H190.52780.78720.59190.033*
C200.39949 (18)0.6339 (2)0.60864 (11)0.0266 (5)
H200.33030.68610.57720.032*
N80.15854 (16)0.5356 (2)0.63804 (10)0.0260 (4)
O1−0.00210 (14)0.29351 (18)0.50276 (9)0.0404 (4)
S10.34870 (5)0.07723 (6)0.60476 (3)0.02864 (13)
Cl10.33192 (6)0.62648 (7)0.92643 (3)0.04561 (17)
Cl20.76515 (5)0.68900 (7)0.67408 (3)0.03580 (14)
H80.1180 (19)0.569 (2)0.5974 (11)0.027 (6)*
U11U22U33U12U13U23
C20.0317 (12)0.0281 (12)0.0222 (10)−0.0019 (10)0.0076 (9)−0.0037 (9)
C30.0298 (11)0.0228 (11)0.0172 (10)0.0003 (9)0.0031 (9)0.0016 (8)
C40.0279 (12)0.0285 (12)0.0185 (10)0.0027 (9)0.0009 (9)−0.0070 (9)
C50.0262 (11)0.0277 (12)0.0297 (11)−0.0043 (10)0.0058 (9)0.0001 (10)
C60.0331 (12)0.0244 (11)0.0335 (12)−0.0026 (10)0.0061 (10)−0.0013 (10)
C70.0233 (10)0.0211 (10)0.0184 (9)0.0029 (9)0.0035 (8)0.0015 (9)
C90.0196 (10)0.0201 (11)0.0283 (10)−0.0057 (9)0.0095 (9)−0.0017 (9)
C100.0255 (11)0.0216 (11)0.0307 (11)−0.0034 (9)0.0116 (9)−0.0013 (9)
C110.0309 (12)0.0298 (13)0.0284 (11)−0.0103 (10)0.0125 (10)−0.0022 (10)
C120.0368 (13)0.0357 (14)0.0444 (14)−0.0102 (11)0.0239 (11)−0.0131 (11)
C130.0263 (12)0.0308 (13)0.0533 (14)0.0015 (11)0.0186 (11)−0.0070 (11)
C140.0209 (11)0.0262 (12)0.0369 (12)−0.0015 (9)0.0095 (9)0.0000 (10)
C150.0255 (11)0.0220 (10)0.0166 (10)0.0021 (9)0.0045 (8)−0.0024 (9)
C160.0281 (11)0.0220 (11)0.0199 (9)0.0000 (10)0.0026 (8)0.0017 (9)
C170.0262 (11)0.0270 (12)0.0243 (10)0.0033 (10)0.0026 (9)−0.0021 (9)
C180.0241 (11)0.0244 (11)0.0245 (10)−0.0013 (9)0.0072 (8)−0.0060 (9)
C190.0314 (12)0.0210 (11)0.0319 (11)0.0001 (10)0.0101 (10)0.0048 (10)
C200.0240 (11)0.0234 (11)0.0312 (11)0.0061 (9)0.0053 (9)0.0052 (10)
N80.0254 (10)0.0282 (11)0.0222 (9)0.0053 (8)0.0025 (8)−0.0009 (8)
O10.0317 (8)0.0408 (9)0.0384 (8)0.0017 (8)−0.0090 (7)0.0025 (8)
S10.0268 (3)0.0258 (3)0.0316 (3)0.0030 (3)0.0046 (2)0.0003 (2)
Cl10.0576 (4)0.0523 (4)0.0252 (3)−0.0036 (3)0.0077 (3)−0.0042 (3)
Cl20.0269 (3)0.0373 (3)0.0424 (3)−0.0062 (3)0.0076 (2)−0.0012 (3)
C2—C31.545 (3)C10—C111.389 (3)
C2—S11.804 (2)C10—H100.9500
C2—H2A0.9900C11—C121.375 (3)
C2—H2B0.9900C11—Cl11.748 (2)
C3—C41.521 (3)C12—C131.388 (3)
C3—C71.555 (2)C12—H120.9500
C3—H31.0000C13—C141.385 (3)
C4—O11.219 (2)C13—H130.9500
C4—C51.505 (3)C14—H140.9500
C5—C61.533 (3)C15—C201.386 (3)
C5—H5A0.9900C15—C161.395 (3)
C5—H5B0.9900C16—C171.385 (3)
C6—S11.799 (2)C16—H160.9500
C6—H6A0.9900C17—C181.372 (3)
C6—H6B0.9900C17—H170.9500
C7—N81.451 (2)C18—C191.388 (3)
C7—C151.524 (3)C18—Cl21.747 (2)
C7—H71.0000C19—C201.389 (3)
C9—N81.381 (2)C19—H190.9500
C9—C101.397 (3)C20—H200.9500
C9—C141.399 (3)N8—H80.81 (2)
C3—C2—S1113.20 (13)C11—C10—H10120.2
C3—C2—H2A108.9C9—C10—H10120.2
S1—C2—H2A108.9C12—C11—C10122.5 (2)
C3—C2—H2B108.9C12—C11—Cl1119.15 (16)
S1—C2—H2B108.9C10—C11—Cl1118.39 (17)
H2A—C2—H2B107.8C11—C12—C13117.82 (19)
C4—C3—C2109.45 (16)C11—C12—H12121.1
C4—C3—C7110.60 (15)C13—C12—H12121.1
C2—C3—C7113.47 (15)C14—C13—C12121.1 (2)
C4—C3—H3107.7C14—C13—H13119.5
C2—C3—H3107.7C12—C13—H13119.5
C7—C3—H3107.7C13—C14—C9120.82 (19)
O1—C4—C5121.19 (19)C13—C14—H14119.6
O1—C4—C3121.12 (19)C9—C14—H14119.6
C5—C4—C3117.63 (17)C20—C15—C16118.50 (18)
C4—C5—C6111.94 (16)C20—C15—C7121.65 (17)
C4—C5—H5A109.2C16—C15—C7119.80 (17)
C6—C5—H5A109.2C17—C16—C15120.98 (19)
C4—C5—H5B109.2C17—C16—H16119.5
C6—C5—H5B109.2C15—C16—H16119.5
H5A—C5—H5B107.9C18—C17—C16119.29 (19)
C5—C6—S1113.37 (15)C18—C17—H17120.4
C5—C6—H6A108.9C16—C17—H17120.4
S1—C6—H6A108.9C17—C18—C19121.32 (19)
C5—C6—H6B108.9C17—C18—Cl2118.95 (16)
S1—C6—H6B108.9C19—C18—Cl2119.73 (16)
H6A—C6—H6B107.7C18—C19—C20118.74 (19)
N8—C7—C15114.59 (17)C18—C19—H19120.6
N8—C7—C3107.13 (14)C20—C19—H19120.6
C15—C7—C3111.44 (14)C15—C20—C19121.15 (19)
N8—C7—H7107.8C15—C20—H20119.4
C15—C7—H7107.8C19—C20—H20119.4
C3—C7—H7107.8C9—N8—C7123.97 (17)
N8—C9—C10122.09 (18)C9—N8—H8116.9 (15)
N8—C9—C14119.70 (18)C7—N8—H8115.6 (14)
C10—C9—C14118.17 (18)C6—S1—C296.53 (10)
C11—C10—C9119.63 (19)
S1—C2—C3—C4−61.14 (18)C10—C9—C14—C13−1.2 (3)
S1—C2—C3—C762.93 (19)N8—C7—C15—C20−46.3 (2)
C2—C3—C4—O1−120.6 (2)C3—C7—C15—C2075.5 (2)
C7—C3—C4—O1113.7 (2)N8—C7—C15—C16136.32 (18)
C2—C3—C4—C556.6 (2)C3—C7—C15—C16−101.83 (19)
C7—C3—C4—C5−69.1 (2)C20—C15—C16—C17−1.2 (3)
O1—C4—C5—C6121.5 (2)C7—C15—C16—C17176.23 (17)
C3—C4—C5—C6−55.7 (2)C15—C16—C17—C180.8 (3)
C4—C5—C6—S158.2 (2)C16—C17—C18—C190.3 (3)
C4—C3—C7—N8−61.7 (2)C16—C17—C18—Cl2179.32 (15)
C2—C3—C7—N8174.84 (16)C17—C18—C19—C20−0.9 (3)
C4—C3—C7—C15172.20 (16)Cl2—C18—C19—C20180.00 (15)
C2—C3—C7—C1548.8 (2)C16—C15—C20—C190.5 (3)
N8—C9—C10—C11−175.75 (18)C7—C15—C20—C19−176.88 (18)
C14—C9—C10—C111.9 (3)C18—C19—C20—C150.5 (3)
C9—C10—C11—C12−1.3 (3)C10—C9—N8—C7−10.8 (3)
C9—C10—C11—Cl1178.88 (15)C14—C9—N8—C7171.62 (18)
C10—C11—C12—C13−0.2 (3)C15—C7—N8—C9−62.2 (2)
Cl1—C11—C12—C13179.69 (16)C3—C7—N8—C9173.59 (17)
C11—C12—C13—C140.9 (3)C5—C6—S1—C2−56.47 (16)
C12—C13—C14—C9−0.3 (3)C3—C2—S1—C658.68 (16)
N8—C9—C14—C13176.54 (18)
D—H···AD—HH···AD···AD—H···A
N8—H8···O1i0.81 (2)2.27 (2)3.070 (2)168 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N8—H8⋯O1i0.81 (2)2.27 (2)3.070 (2)168 (2)

Symmetry code: (i) .

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4.  rac-3-[(Anilino)(naphthalen-2-yl)-methyl]thian-4-one.

Authors:  Klaus Harms; M Saeed Abaee; Mohammad M Mojtahedi; A Wahid Mesbah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-17

5.  Structure validation in chemical crystallography.

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1.  rac-3-[(Anilino)(naphthalen-2-yl)-methyl]thian-4-one.

Authors:  Klaus Harms; M Saeed Abaee; Mohammad M Mojtahedi; A Wahid Mesbah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-17
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