Literature DB >> 22412543

(6Z)-3,5-Bis(4-fluoro-phen-yl)-6-(1-hy-droxy-ethyl-idene)cyclo-hex-2-en-1-one.

Jerry P Jasinski, James A Golen, S Samshuddin, B Narayana, H S Yathirajan.   

Abstract

In the title compound, C(20)H(16)F(2)O(2), the cyclo-hex-2-en-1-one ring adopts a distorted envelope conformation and the dihedral angles between its six-atom mean plane and the fluorophenyl rings are 38.9(8) and 82.3(1)°. The two fluoro-phenyl rings are oriented at an angle of 77.3 (3)°. The long hy-droxy O-H bond length of 1.22 (3) and the H⋯O distance of 1.28 (3) Å, together with a longer than expected C=O bond length [1.290 (2) Å] in the hy-droxy(en-1-one) group, indicate sharing of the H atom as O⋯H⋯O between the two O atoms and the influence of electron delocalization. Weak C-H⋯O inter-molecular inter-actions form an infinite two-dimensional network in (011).

Entities:  

Year:  2012        PMID: 22412543      PMCID: PMC3295432          DOI: 10.1107/S1600536812003078

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological applications of some cyclo­hexenones, see: Eddington et al. (2000 ▶); Kolesnick & Golde (1994 ▶). For background to the applications of cyclo­hexenones, see: Padmavathi et al. (1999 ▶, 2000 ▶); Padmavathi, Sharmila, Somashekara Reddy & Bhaskar Reddy (2001 ▶); Padmavathi, Sharmila, Balaiah et al. (2001 ▶). For related structures, see: Fischer et al. (2008 ▶); Li et al. (2009 ▶); Dutkiewicz et al. (2011 ▶). For the various derivatives of 4,4-difluoro­chalcone, see: Fun et al. (2010 ▶); Jasinski et al. (2010 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H16F2O2 M = 326.33 Monoclinic, a = 17.663 (2) Å b = 6.2371 (6) Å c = 15.2357 (16) Å β = 107.717 (13)° V = 1598.9 (3) Å3 Z = 4 Cu Kα radiation μ = 0.85 mm−1 T = 173 K 0.35 × 0.20 × 0.18 mm

Data collection

Oxford Diffraction Xcalibur Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.754, T max = 0.862 5441 measured reflections 3023 independent reflections 2154 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.147 S = 1.02 3023 reflections 222 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812003078/gg2071sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812003078/gg2071Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812003078/gg2071Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16F2O2F(000) = 680
Mr = 326.33Dx = 1.356 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 1763 reflections
a = 17.663 (2) Åθ = 3.4–70.8°
b = 6.2371 (6) ŵ = 0.85 mm1
c = 15.2357 (16) ÅT = 173 K
β = 107.717 (13)°Block, yellow
V = 1598.9 (3) Å30.35 × 0.20 × 0.18 mm
Z = 4
Oxford Diffraction Xcalibur Gemini diffractometer3023 independent reflections
Radiation source: Enhance (Cu) X-ray Source2154 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
Detector resolution: 16.1500 pixels mm-1θmax = 70.7°, θmin = 5.3°
ω scansh = −21→8
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −7→7
Tmin = 0.754, Tmax = 0.862l = −18→18
5441 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.147w = 1/[σ2(Fo2) + (0.0646P)2 + 0.2155P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3023 reflectionsΔρmax = 0.17 e Å3
222 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0017 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.55493 (10)0.1856 (4)0.43446 (11)0.1300 (7)
F20.01595 (9)0.2581 (3)0.48620 (11)0.0984 (5)
O10.26793 (10)0.4978 (3)−0.05192 (11)0.0813 (5)
H10.2297 (15)0.605 (5)−0.0137 (19)0.098*
O20.19432 (10)0.6694 (2)0.04310 (11)0.0785 (5)
C10.32971 (15)0.1596 (5)−0.01899 (18)0.0895 (8)
H1A0.33180.1788−0.08200.134*
H1B0.30590.0201−0.01370.134*
H1C0.38370.16570.02410.134*
C20.28083 (13)0.3328 (4)0.00327 (15)0.0666 (6)
C30.25062 (12)0.3242 (3)0.07759 (13)0.0585 (5)
C40.20637 (13)0.4997 (3)0.09387 (14)0.0610 (5)
C50.17204 (13)0.4938 (3)0.16889 (15)0.0622 (5)
H5A0.15390.62350.18820.075*
C60.16517 (11)0.3107 (3)0.21179 (14)0.0552 (5)
C70.19511 (12)0.1060 (3)0.18191 (16)0.0610 (5)
H7A0.15110.03750.13360.073*
H7B0.21120.00690.23510.073*
C80.26582 (12)0.1378 (3)0.14426 (14)0.0591 (5)
H8A0.26990.00580.10870.071*
C90.34407 (12)0.1584 (3)0.22286 (14)0.0598 (5)
C100.37064 (15)−0.0158 (4)0.28156 (16)0.0741 (6)
H10A0.3398−0.14340.27220.089*
C110.44143 (16)−0.0060 (5)0.35355 (18)0.0892 (8)
H11A0.4591−0.12470.39370.107*
C120.48489 (16)0.1786 (6)0.36503 (17)0.0879 (8)
C130.46193 (14)0.3517 (5)0.31003 (16)0.0805 (7)
H13A0.49360.47780.31980.097*
C140.39064 (13)0.3403 (4)0.23873 (15)0.0692 (6)
H14A0.37360.46140.19990.083*
C150.12484 (11)0.2989 (3)0.28353 (13)0.0544 (5)
C160.08461 (12)0.1136 (4)0.29494 (15)0.0623 (5)
H16A0.0831−0.00580.25570.075*
C170.04699 (12)0.1000 (4)0.36192 (16)0.0674 (6)
H17A0.0191−0.02620.36860.081*
C180.05082 (13)0.2727 (4)0.41839 (15)0.0680 (6)
C190.08926 (13)0.4591 (4)0.41012 (15)0.0679 (6)
H19A0.09060.57690.45010.081*
C200.12583 (12)0.4709 (3)0.34258 (14)0.0616 (5)
H20A0.15250.59940.33590.074*
U11U22U33U12U13U23
F10.0915 (11)0.195 (2)0.0799 (10)0.0137 (13)−0.0091 (9)0.0144 (12)
F20.1129 (12)0.1062 (11)0.0963 (10)−0.0046 (9)0.0622 (9)−0.0015 (9)
O10.0858 (11)0.0952 (12)0.0606 (9)−0.0078 (10)0.0188 (8)0.0136 (9)
O20.0991 (12)0.0610 (9)0.0726 (10)0.0020 (8)0.0222 (9)0.0133 (8)
C10.0811 (16)0.114 (2)0.0818 (16)0.0050 (16)0.0377 (14)0.0018 (16)
C20.0587 (12)0.0782 (15)0.0583 (12)−0.0082 (11)0.0110 (10)−0.0009 (11)
C30.0593 (11)0.0602 (12)0.0532 (11)−0.0066 (9)0.0130 (9)−0.0014 (9)
C40.0672 (12)0.0521 (11)0.0569 (11)−0.0050 (10)0.0087 (10)0.0021 (9)
C50.0696 (13)0.0493 (11)0.0672 (12)0.0017 (10)0.0200 (11)−0.0023 (10)
C60.0528 (10)0.0474 (10)0.0614 (11)−0.0019 (8)0.0113 (9)−0.0038 (9)
C70.0647 (12)0.0495 (11)0.0703 (13)−0.0029 (9)0.0225 (10)−0.0011 (10)
C80.0645 (12)0.0528 (11)0.0621 (11)0.0017 (9)0.0225 (10)−0.0034 (9)
C90.0639 (12)0.0647 (12)0.0561 (11)0.0101 (10)0.0263 (10)0.0025 (10)
C100.0818 (16)0.0723 (15)0.0732 (14)0.0130 (12)0.0310 (13)0.0104 (12)
C110.0948 (19)0.105 (2)0.0696 (15)0.0321 (17)0.0283 (15)0.0231 (15)
C120.0720 (15)0.130 (2)0.0589 (13)0.0129 (17)0.0151 (12)0.0062 (16)
C130.0727 (14)0.103 (2)0.0624 (13)−0.0063 (14)0.0154 (12)0.0002 (14)
C140.0668 (13)0.0773 (15)0.0614 (12)−0.0020 (12)0.0163 (11)0.0054 (11)
C150.0495 (10)0.0526 (11)0.0579 (11)0.0015 (8)0.0116 (9)0.0009 (9)
C160.0587 (11)0.0585 (12)0.0675 (12)−0.0046 (10)0.0162 (10)−0.0061 (10)
C170.0566 (12)0.0648 (13)0.0809 (14)−0.0065 (10)0.0211 (11)0.0025 (12)
C180.0630 (13)0.0781 (15)0.0647 (13)0.0053 (11)0.0220 (11)0.0033 (12)
C190.0740 (14)0.0657 (13)0.0635 (12)−0.0004 (11)0.0202 (11)−0.0071 (11)
C200.0633 (12)0.0546 (11)0.0626 (12)−0.0031 (9)0.0125 (10)−0.0026 (10)
F1—C121.362 (3)C8—H8A1.0000
F2—C181.357 (2)C9—C141.379 (3)
O1—C21.304 (3)C9—C101.394 (3)
O1—H11.22 (3)C10—C111.391 (3)
O2—C41.290 (2)C10—H10A0.9500
O2—H11.28 (3)C11—C121.365 (4)
C1—C21.485 (3)C11—H11A0.9500
C1—H1A0.9800C12—C131.351 (4)
C1—H1B0.9800C13—C141.392 (3)
C1—H1C0.9800C13—H13A0.9500
C2—C31.392 (3)C14—H14A0.9500
C3—C41.410 (3)C15—C161.395 (3)
C3—C81.513 (3)C15—C201.397 (3)
C4—C51.448 (3)C16—C171.380 (3)
C5—C61.339 (3)C16—H16A0.9500
C5—H5A0.9500C17—C181.367 (3)
C6—C151.477 (3)C17—H17A0.9500
C6—C71.505 (3)C18—C191.371 (3)
C7—C81.538 (3)C19—C201.373 (3)
C7—H7A0.9900C19—H19A0.9500
C7—H7B0.9900C20—H20A0.9500
C8—C91.534 (3)
C2—O1—H198.0 (12)C14—C9—C8123.59 (19)
C4—O2—H197.0 (12)C10—C9—C8118.9 (2)
C2—C1—H1A109.5C11—C10—C9121.2 (2)
C2—C1—H1B109.5C11—C10—H10A119.4
H1A—C1—H1B109.5C9—C10—H10A119.4
C2—C1—H1C109.5C12—C11—C10118.3 (2)
H1A—C1—H1C109.5C12—C11—H11A120.9
H1B—C1—H1C109.5C10—C11—H11A120.9
O1—C2—C3121.3 (2)C13—C12—F1119.1 (3)
O1—C2—C1115.2 (2)C13—C12—C11122.9 (3)
C3—C2—C1123.4 (2)F1—C12—C11118.0 (3)
C2—C3—C4118.9 (2)C12—C13—C14118.2 (3)
C2—C3—C8122.8 (2)C12—C13—H13A120.9
C4—C3—C8118.23 (18)C14—C13—H13A120.9
O2—C4—C3122.1 (2)C9—C14—C13121.9 (2)
O2—C4—C5117.5 (2)C9—C14—H14A119.1
C3—C4—C5120.43 (19)C13—C14—H14A119.1
C6—C5—C4121.92 (19)C16—C15—C20117.58 (19)
C6—C5—H5A119.0C16—C15—C6120.81 (18)
C4—C5—H5A119.0C20—C15—C6121.61 (18)
C5—C6—C15122.64 (18)C17—C16—C15121.4 (2)
C5—C6—C7118.91 (19)C17—C16—H16A119.3
C15—C6—C7118.34 (17)C15—C16—H16A119.3
C6—C7—C8113.80 (17)C18—C17—C16118.3 (2)
C6—C7—H7A108.8C18—C17—H17A120.9
C8—C7—H7A108.8C16—C17—H17A120.9
C6—C7—H7B108.8F2—C18—C17118.6 (2)
C8—C7—H7B108.8F2—C18—C19118.6 (2)
H7A—C7—H7B107.7C17—C18—C19122.8 (2)
C3—C8—C9113.18 (17)C18—C19—C20118.3 (2)
C3—C8—C7110.55 (17)C18—C19—H19A120.9
C9—C8—C7111.15 (17)C20—C19—H19A120.9
C3—C8—H8A107.2C19—C20—C15121.6 (2)
C9—C8—H8A107.2C19—C20—H20A119.2
C7—C8—H8A107.2C15—C20—H20A119.2
C14—C9—C10117.5 (2)
O1—C2—C3—C4−1.1 (3)C14—C9—C10—C110.1 (3)
C1—C2—C3—C4178.5 (2)C8—C9—C10—C11179.6 (2)
O1—C2—C3—C8−178.63 (18)C9—C10—C11—C12−0.5 (4)
C1—C2—C3—C81.0 (3)C10—C11—C12—C130.4 (4)
C2—C3—C4—O2−1.3 (3)C10—C11—C12—F1−178.7 (2)
C8—C3—C4—O2176.34 (18)F1—C12—C13—C14179.2 (2)
C2—C3—C4—C5178.17 (19)C11—C12—C13—C140.1 (4)
C8—C3—C4—C5−4.2 (3)C10—C9—C14—C130.4 (3)
O2—C4—C5—C6164.4 (2)C8—C9—C14—C13−179.0 (2)
C3—C4—C5—C6−15.1 (3)C12—C13—C14—C9−0.5 (4)
C4—C5—C6—C15−175.21 (18)C5—C6—C15—C16148.4 (2)
C4—C5—C6—C70.9 (3)C7—C6—C15—C16−27.7 (3)
C5—C6—C7—C830.3 (3)C5—C6—C15—C20−32.0 (3)
C15—C6—C7—C8−153.45 (17)C7—C6—C15—C20151.90 (19)
C2—C3—C8—C985.6 (2)C20—C15—C16—C170.1 (3)
C4—C3—C8—C9−91.9 (2)C6—C15—C16—C17179.70 (18)
C2—C3—C8—C7−148.96 (19)C15—C16—C17—C18−0.9 (3)
C4—C3—C8—C733.5 (2)C16—C17—C18—F2−178.07 (18)
C6—C7—C8—C3−45.8 (2)C16—C17—C18—C191.1 (3)
C6—C7—C8—C980.8 (2)F2—C18—C19—C20178.66 (19)
C3—C8—C9—C148.3 (3)C17—C18—C19—C20−0.5 (3)
C7—C8—C9—C14−116.8 (2)C18—C19—C20—C15−0.3 (3)
C3—C8—C9—C10−171.12 (18)C16—C15—C20—C190.5 (3)
C7—C8—C9—C1063.8 (2)C6—C15—C20—C19−179.09 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1···O21.22 (3)1.28 (3)2.465 (2)163 (2)
C8—H8A···O2i1.002.523.365 (3)142
C19—H19A···O2ii0.952.513.260 (3)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1⋯H1⋯O21.22 (3)1.28 (3)2.465 (2)163 (2)
C8—H8A⋯O2i1.002.523.365 (3)142
C19—H19A⋯O2ii0.952.513.260 (3)136

Symmetry codes: (i) ; (ii) .

  8 in total

Review 1.  Enaminones-versatile therapeutic pharmacophores. Further advances.

Authors:  N D Eddington; D S Cox; R R Roberts; J P Stables; C B Powell; K R Scott
Journal:  Curr Med Chem       Date:  2000-04       Impact factor: 4.530

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  The sphingomyelin pathway in tumor necrosis factor and interleukin-1 signaling.

Authors:  R Kolesnick; D W Golde
Journal:  Cell       Date:  1994-05-06       Impact factor: 41.582

4.  Methyl 4,6-bis-(4-fluoro-phen-yl)-2-oxo-cyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; S Samshuddin; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-17

5.  Ethyl 6-(6-meth-oxy-2-naphth-yl)-2-oxo-4-(2-thien-yl)cyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Hongqi Li; Anil N Mayekar; B Narayana; H S Yathirajan; W T A Harrison
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-10

6.  rac-Ethyl 3-(3-bromo-2-thien-yl)-2-oxo-6-(4-propoxyphen-yl)cyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Andreas Fischer; M T Swamy; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-22

7.  (1RS,6SR)-Ethyl 4-(2,4-dichloro-phen-yl)-6-(4-fluoro-phen-yl)-2-oxocyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Grzegorz Dutkiewicz; B Narayana; K Veena; H S Yathirajan; Maciej Kubicki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-22

8.  2,3-Dibromo-1,3-bis-(4-fluoro-phen-yl)propan-1-one.

Authors:  Jerry P Jasinski; Curtis J Guild; S Samshuddin; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-14
  8 in total

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