Literature DB >> 22412539

(E)-1-(1,3-Benzodioxol-5-yl)-4,4-di-methyl-pent-1-en-3-one.

Hoong-Kun Fun, Ching Kheng Quah, Mohamed I Attia, Mohammed F El-Behairy, Omar A Al-Deeb.   

Abstract

In the mol-ecule of the title compound, C(14)H(16)O(3), all non-H atoms except for one methyl C atom lie on a crystallographic mirror plane. The conformation with respect to the C=C bond [1.3465 (12) Å] is trans. In the crystal, mol-ecules are linked via C-H⋯O hydrogen bonds into C(5) chains propagating along [100].

Entities:  

Year:  2012        PMID: 22412539      PMCID: PMC3295428          DOI: 10.1107/S1600536812004242

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the pharmacological activities of the title compound, see: Pessah et al. (2009 ▶); Jain (2005 ▶); Medina et al. (2005 ▶). For the preparation of the title compound, see: Aboul-Enein et al. (2012 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C14H16O3 M = 232.27 Monoclinic, a = 6.5305 (1) Å b = 6.6798 (1) Å c = 13.7264 (2) Å β = 96.676 (1)° V = 594.72 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.42 × 0.32 × 0.25 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.963, T max = 0.978 8645 measured reflections 2336 independent reflections 2117 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.110 S = 1.05 2336 reflections 138 parameters All H-atom parameters refined Δρmax = 0.48 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812004242/hb6621sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004242/hb6621Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812004242/hb6621Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H16O3F(000) = 248
Mr = 232.27Dx = 1.297 Mg m3
Monoclinic, P21/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybCell parameters from 4988 reflections
a = 6.5305 (1) Åθ = 3.0–32.7°
b = 6.6798 (1) ŵ = 0.09 mm1
c = 13.7264 (2) ÅT = 100 K
β = 96.676 (1)°Block, colourless
V = 594.72 (2) Å30.42 × 0.32 × 0.25 mm
Z = 2
Bruker SMART APEXII CCD diffractometer2336 independent reflections
Radiation source: fine-focus sealed tube2117 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
φ and ω scansθmax = 32.7°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.963, Tmax = 0.978k = −9→10
8645 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110All H-atom parameters refined
S = 1.05w = 1/[σ2(Fo2) + (0.0687P)2 + 0.0862P] where P = (Fo2 + 2Fc2)/3
2336 reflections(Δ/σ)max = 0.001
138 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.28 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.08309 (10)0.75000.73220 (5)0.01756 (15)
O20.23387 (11)0.75000.67099 (5)0.02109 (16)
O3−0.10343 (12)0.75000.11962 (5)0.0284 (2)
C1−0.27995 (14)0.75000.46990 (7)0.01734 (18)
C2−0.29527 (14)0.75000.57113 (7)0.01815 (18)
C3−0.11215 (14)0.75000.63184 (6)0.01431 (16)
C40.13580 (14)0.75000.75950 (6)0.01731 (17)
C50.07776 (13)0.75000.59505 (6)0.01401 (16)
C60.09473 (13)0.75000.49674 (6)0.01446 (16)
C7−0.08980 (13)0.75000.43188 (6)0.01338 (16)
C8−0.08717 (14)0.75000.32577 (6)0.01474 (16)
C90.08137 (14)0.75000.27781 (6)0.01558 (17)
C100.06467 (14)0.75000.16901 (6)0.01549 (17)
C110.26558 (13)0.75000.12174 (6)0.01458 (16)
C120.21897 (17)0.75000.01018 (7)0.0271 (2)
C130.39093 (12)0.56198 (11)0.15410 (6)0.02431 (16)
H1A−0.406 (3)0.75000.4256 (12)0.032 (4)*
H2A−0.424 (3)0.75000.5974 (12)0.031 (4)*
H4A0.1728 (15)0.6272 (15)0.7976 (7)0.018 (2)*
H6A0.239 (2)0.75000.4738 (11)0.025 (4)*
H8A−0.220 (3)0.75000.2883 (12)0.034 (4)*
H9A0.218 (3)0.75000.3117 (12)0.032 (4)*
H12A0.138 (2)0.631 (2)−0.0117 (9)0.041 (3)*
H12B0.350 (3)0.7500−0.0180 (12)0.030 (4)*
H13A0.4241 (18)0.5522 (18)0.2246 (9)0.034 (3)*
H13B0.3154 (19)0.4437 (18)0.1331 (8)0.033 (3)*
H13C0.5215 (17)0.5639 (16)0.1247 (8)0.026 (3)*
U11U22U33U12U13U23
O10.0164 (3)0.0258 (3)0.0112 (3)0.0000.0045 (2)0.000
O20.0137 (3)0.0385 (4)0.0113 (3)0.0000.0022 (2)0.000
O30.0141 (3)0.0557 (6)0.0153 (3)0.0000.0012 (2)0.000
C10.0124 (4)0.0258 (4)0.0141 (4)0.0000.0029 (3)0.000
C20.0133 (4)0.0272 (4)0.0149 (4)0.0000.0054 (3)0.000
C30.0147 (4)0.0167 (4)0.0122 (3)0.0000.0046 (3)0.000
C40.0173 (4)0.0231 (4)0.0119 (3)0.0000.0032 (3)0.000
C50.0123 (3)0.0173 (4)0.0127 (3)0.0000.0027 (3)0.000
C60.0127 (3)0.0187 (4)0.0126 (3)0.0000.0040 (3)0.000
C70.0127 (3)0.0157 (4)0.0123 (3)0.0000.0034 (3)0.000
C80.0142 (3)0.0180 (4)0.0123 (3)0.0000.0030 (3)0.000
C90.0142 (4)0.0210 (4)0.0119 (3)0.0000.0029 (3)0.000
C100.0136 (4)0.0206 (4)0.0127 (3)0.0000.0036 (3)0.000
C110.0137 (3)0.0178 (4)0.0130 (3)0.0000.0045 (3)0.000
C120.0222 (5)0.0465 (7)0.0136 (4)0.0000.0065 (3)0.000
C130.0235 (3)0.0215 (3)0.0302 (3)0.0061 (3)0.0129 (3)0.0056 (3)
O1—C31.3685 (10)C7—C81.4587 (12)
O1—C41.4350 (11)C8—C91.3465 (12)
O2—C51.3706 (11)C8—H8A0.956 (18)
O2—C41.4378 (11)C9—C101.4848 (12)
O3—C101.2214 (11)C9—H9A0.960 (17)
C1—C71.4018 (12)C10—C111.5298 (12)
C1—C21.4046 (12)C11—C121.5262 (13)
C1—H1A0.967 (17)C11—C13i1.5363 (9)
C2—C31.3758 (13)C11—C131.5363 (9)
C2—H2A0.952 (17)C12—H12A0.985 (13)
C3—C51.3924 (11)C12—H12B0.980 (17)
C4—H4A0.988 (10)C13—H13A0.969 (12)
C5—C61.3668 (11)C13—H13B0.958 (12)
C6—C71.4125 (12)C13—H13C0.985 (11)
C6—H6A1.026 (16)
C3—O1—C4106.27 (6)C9—C8—H8A118.6 (10)
C5—O2—C4106.12 (7)C7—C8—H8A115.0 (10)
C7—C1—C2122.43 (8)C8—C9—C10121.54 (8)
C7—C1—H1A119.6 (10)C8—C9—H9A122.2 (10)
C2—C1—H1A117.9 (10)C10—C9—H9A116.3 (10)
C3—C2—C1116.25 (8)O3—C10—C9120.97 (8)
C3—C2—H2A120.9 (10)O3—C10—C11121.63 (8)
C1—C2—H2A122.9 (10)C9—C10—C11117.40 (7)
O1—C3—C2128.23 (8)C12—C11—C10110.16 (8)
O1—C3—C5109.87 (8)C12—C11—C13i109.12 (5)
C2—C3—C5121.90 (8)C10—C11—C13i109.38 (5)
O1—C4—O2107.90 (7)C12—C11—C13109.12 (5)
O1—C4—H4A108.2 (6)C10—C11—C13109.38 (5)
O2—C4—H4A110.0 (6)C13i—C11—C13109.67 (8)
C6—C5—O2127.76 (8)C11—C12—H12A110.1 (7)
C6—C5—C3122.41 (8)C11—C12—H12B108.4 (10)
O2—C5—C3109.83 (7)H12A—C12—H12B110.1 (9)
C5—C6—C7117.46 (8)C11—C13—H13A113.2 (7)
C5—C6—H6A119.0 (9)C11—C13—H13B110.4 (7)
C7—C6—H6A123.5 (9)H13A—C13—H13B107.0 (10)
C1—C7—C6119.55 (8)C11—C13—H13C109.2 (6)
C1—C7—C8119.05 (8)H13A—C13—H13C107.8 (9)
C6—C7—C8121.41 (7)H13B—C13—H13C109.1 (9)
C9—C8—C7126.39 (8)
C7—C1—C2—C30.0C2—C1—C7—C60.0
C4—O1—C3—C2180.0C2—C1—C7—C8180.0
C4—O1—C3—C50.0C5—C6—C7—C10.0
C1—C2—C3—O1180.0C5—C6—C7—C8180.0
C1—C2—C3—C50.0C1—C7—C8—C9180.0
C3—O1—C4—O20.0C6—C7—C8—C90.0
C5—O2—C4—O10.0C7—C8—C9—C10180.0
C4—O2—C5—C6180.0C8—C9—C10—O30.0
C4—O2—C5—C30.0C8—C9—C10—C11180.0
O1—C3—C5—C6180.0O3—C10—C11—C120.0
C2—C3—C5—C60.0C9—C10—C11—C12180.0
O1—C3—C5—O20.0O3—C10—C11—C13i119.93 (5)
C2—C3—C5—O2180.0C9—C10—C11—C13i−60.07 (5)
O2—C5—C6—C7180.0O3—C10—C11—C13−119.93 (5)
C3—C5—C6—C70.0C9—C10—C11—C1360.07 (5)
D—H···AD—HH···AD···AD—H···A
C2—H2A···O2ii0.95 (2)2.56 (2)3.5092 (12)179 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯O2i0.95 (2)2.56 (2)3.5092 (12)179 (1)

Symmetry code: (i) .

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