Literature DB >> 22412498

Methyl N-({[2-(2-meth-oxy-acetamido)-4-(phenyl-sulfan-yl)phen-yl]amino}[(meth-oxy-carbonyl)imino]methyl)carbamate.

Hoong-Kun Fun, Madhukar Hemamalini, K Divya, B Narayana, B K Sarojini.   

Abstract

In the title compound, C(20)H(22)N(4)O(6)S, the phenyl and benzene rings form a dihedral angle of 58.75 (5)°. Intra-molecular N-H⋯O and N-H⋯N hydrogen bonds generate two S(6) and one S(7) ring motif, respectively. In the crystal, mol-ecules are linked via N-H⋯O, N-H⋯N, C-H⋯S and C-H⋯O hydrogen bonds, forming two-dimensional networks parallel to the bc plane.

Entities:  

Year:  2012        PMID: 22412498      PMCID: PMC3297308          DOI: 10.1107/S1600536812002760

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological properties of febantel, see: Wollweber et al. (1978 ▶); Delatour et al. (1982 ▶); Su et al. (2004 ▶). For a related structure, see: Yıldırım et al. (2007 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C20H22N4O6S M = 446.48 Monoclinic, a = 10.6975 (7) Å b = 10.6921 (7) Å c = 18.3732 (13) Å β = 91.068 (1)° V = 2101.1 (2) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 296 K 0.54 × 0.34 × 0.29 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.900, T max = 0.945 22847 measured reflections 6133 independent reflections 5455 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.097 S = 1.05 6133 reflections 295 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812002760/rz2701sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812002760/rz2701Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812002760/rz2701Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H22N4O6SF(000) = 936
Mr = 446.48Dx = 1.411 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9985 reflections
a = 10.6975 (7) Åθ = 2.7–30.1°
b = 10.6921 (7) ŵ = 0.20 mm1
c = 18.3732 (13) ÅT = 296 K
β = 91.068 (1)°Block, colourless
V = 2101.1 (2) Å30.54 × 0.34 × 0.29 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer6133 independent reflections
Radiation source: fine-focus sealed tube5455 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
φ and ω scansθmax = 30.1°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −15→15
Tmin = 0.900, Tmax = 0.945k = −14→15
22847 measured reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0543P)2 + 0.5625P] where P = (Fo2 + 2Fc2)/3
6133 reflections(Δ/σ)max = 0.001
295 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.42127 (3)0.88419 (2)0.249402 (14)0.02036 (7)
O10.77450 (7)1.22767 (7)0.60941 (4)0.02052 (16)
O20.91564 (7)1.16372 (8)0.69502 (4)0.02151 (16)
O31.02647 (7)0.84660 (8)0.59724 (4)0.02269 (16)
O40.99201 (7)0.71932 (7)0.50204 (4)0.01985 (15)
O50.42655 (7)0.70638 (7)0.50505 (4)0.01913 (15)
O60.72299 (7)0.63922 (7)0.58737 (4)0.02042 (16)
N10.72953 (7)1.04818 (8)0.50714 (4)0.01405 (15)
N20.88185 (8)1.04196 (8)0.59968 (5)0.01607 (16)
N30.86819 (7)0.88433 (8)0.50935 (5)0.01461 (16)
N40.61754 (8)0.80419 (8)0.50169 (5)0.01422 (16)
C10.59824 (8)0.88924 (9)0.44371 (5)0.01307 (17)
C20.52211 (9)0.85788 (9)0.38387 (5)0.01432 (17)
H2A0.47860.78260.38350.017*
C30.51118 (9)0.93868 (9)0.32487 (5)0.01544 (18)
C40.57771 (9)1.05126 (10)0.32423 (5)0.01744 (19)
H4A0.57251.10400.28400.021*
C50.65156 (9)1.08331 (9)0.38420 (5)0.01613 (18)
H5A0.69491.15870.38430.019*
C60.66180 (8)1.00409 (9)0.44448 (5)0.01342 (17)
C70.82806 (8)0.99016 (9)0.53816 (5)0.01355 (17)
C80.84971 (9)1.15290 (10)0.63288 (5)0.01655 (18)
C90.89359 (11)1.27827 (12)0.73505 (7)0.0272 (2)
H9A0.93101.27180.78280.041*
H9B0.80521.29140.73920.041*
H9C0.92991.34740.70970.041*
C100.96600 (9)0.82134 (9)0.54164 (5)0.01516 (18)
C111.09167 (10)0.64191 (10)0.53104 (6)0.0216 (2)
H11A1.09890.56780.50190.032*
H11B1.07350.61890.58020.032*
H11C1.16890.68750.53030.032*
C120.53768 (9)0.71360 (9)0.52285 (5)0.01480 (17)
C130.59492 (9)0.61584 (10)0.57286 (6)0.0188 (2)
H13A0.55030.61500.61830.023*
H13B0.58570.53400.55060.023*
C140.77597 (11)0.54161 (11)0.63081 (6)0.0246 (2)
H14A0.86360.55700.63840.037*
H14B0.76460.46300.60630.037*
H14C0.73530.53900.67690.037*
C150.33882 (9)1.01680 (9)0.21622 (5)0.01638 (18)
C160.29868 (10)1.11434 (11)0.26040 (6)0.0221 (2)
H16A0.31881.11470.30990.026*
C170.22839 (11)1.21108 (11)0.22990 (7)0.0276 (2)
H17A0.20221.27650.25930.033*
C180.19673 (10)1.21137 (11)0.15617 (7)0.0252 (2)
H18A0.15021.27680.13620.030*
C190.23499 (9)1.11348 (10)0.11272 (6)0.0201 (2)
H19A0.21271.11240.06360.024*
C200.30667 (9)1.01637 (10)0.14207 (5)0.01720 (18)
H20A0.33310.95140.11240.021*
H1N40.6939 (14)0.7947 (14)0.5174 (8)0.026 (4)*
H1N10.7094 (14)1.1187 (15)0.5245 (8)0.024 (4)*
H1N20.9432 (15)0.9972 (16)0.6171 (9)0.032 (4)*
U11U22U33U12U13U23
S10.03029 (14)0.01510 (12)0.01531 (13)−0.00098 (9)−0.00951 (9)0.00060 (9)
O10.0204 (3)0.0201 (4)0.0209 (4)0.0025 (3)−0.0047 (3)−0.0038 (3)
O20.0242 (4)0.0229 (4)0.0172 (4)0.0013 (3)−0.0074 (3)−0.0051 (3)
O30.0247 (4)0.0224 (4)0.0206 (4)0.0052 (3)−0.0102 (3)−0.0019 (3)
O40.0179 (3)0.0178 (3)0.0236 (4)0.0047 (3)−0.0061 (3)−0.0035 (3)
O50.0155 (3)0.0220 (4)0.0199 (4)−0.0032 (3)−0.0014 (3)0.0031 (3)
O60.0190 (3)0.0193 (4)0.0227 (4)−0.0005 (3)−0.0054 (3)0.0077 (3)
N10.0145 (3)0.0132 (4)0.0144 (4)0.0004 (3)−0.0033 (3)−0.0013 (3)
N20.0169 (4)0.0161 (4)0.0150 (4)0.0008 (3)−0.0050 (3)−0.0008 (3)
N30.0136 (3)0.0148 (4)0.0153 (4)0.0004 (3)−0.0029 (3)0.0000 (3)
N40.0137 (3)0.0146 (4)0.0142 (4)−0.0011 (3)−0.0032 (3)0.0035 (3)
C10.0130 (4)0.0134 (4)0.0127 (4)0.0007 (3)−0.0009 (3)0.0016 (3)
C20.0150 (4)0.0139 (4)0.0140 (4)−0.0010 (3)−0.0017 (3)0.0003 (3)
C30.0174 (4)0.0157 (4)0.0131 (4)0.0002 (3)−0.0031 (3)−0.0003 (3)
C40.0214 (4)0.0167 (4)0.0141 (4)−0.0013 (3)−0.0031 (3)0.0034 (3)
C50.0177 (4)0.0139 (4)0.0167 (4)−0.0017 (3)−0.0020 (3)0.0015 (3)
C60.0127 (4)0.0140 (4)0.0134 (4)0.0008 (3)−0.0020 (3)−0.0004 (3)
C70.0131 (4)0.0145 (4)0.0130 (4)−0.0024 (3)−0.0011 (3)0.0018 (3)
C80.0159 (4)0.0187 (4)0.0150 (4)−0.0031 (3)−0.0018 (3)−0.0013 (4)
C90.0285 (5)0.0294 (6)0.0234 (5)0.0021 (4)−0.0071 (4)−0.0124 (5)
C100.0141 (4)0.0151 (4)0.0162 (4)−0.0011 (3)−0.0011 (3)0.0015 (3)
C110.0178 (4)0.0182 (5)0.0287 (6)0.0046 (4)−0.0034 (4)0.0016 (4)
C120.0178 (4)0.0139 (4)0.0127 (4)−0.0013 (3)−0.0003 (3)0.0005 (3)
C130.0197 (4)0.0176 (5)0.0189 (5)−0.0037 (3)−0.0035 (3)0.0052 (4)
C140.0290 (5)0.0211 (5)0.0236 (5)0.0070 (4)−0.0038 (4)0.0050 (4)
C150.0159 (4)0.0175 (4)0.0156 (4)−0.0018 (3)−0.0024 (3)0.0016 (3)
C160.0223 (5)0.0263 (5)0.0176 (5)−0.0002 (4)−0.0012 (4)−0.0036 (4)
C170.0246 (5)0.0254 (5)0.0328 (6)0.0050 (4)−0.0005 (4)−0.0077 (5)
C180.0192 (5)0.0223 (5)0.0338 (6)0.0023 (4)−0.0049 (4)0.0036 (4)
C190.0171 (4)0.0236 (5)0.0195 (5)−0.0022 (4)−0.0049 (3)0.0055 (4)
C200.0166 (4)0.0194 (5)0.0156 (4)−0.0014 (3)−0.0024 (3)0.0004 (4)
S1—C31.7712 (10)C4—C51.3868 (14)
S1—C151.7720 (10)C4—H4A0.9300
O1—C81.2081 (13)C5—C61.3971 (13)
O2—C81.3357 (12)C5—H5A0.9300
O2—C91.4502 (14)C9—H9A0.9600
O3—C101.2289 (12)C9—H9B0.9600
O4—C101.3433 (12)C9—H9C0.9600
O4—C111.4438 (12)C11—H11A0.9600
O5—C121.2296 (12)C11—H11B0.9600
O6—C131.4132 (12)C11—H11C0.9600
O6—C141.4249 (13)C12—C131.5136 (14)
N1—C71.3410 (12)C13—H13A0.9700
N1—C61.4288 (12)C13—H13B0.9700
N1—H1N10.848 (16)C14—H14A0.9600
N2—C71.3752 (12)C14—H14B0.9600
N2—C81.3803 (13)C14—H14C0.9600
N2—H1N20.868 (17)C15—C161.3943 (15)
N3—C71.3241 (12)C15—C201.3989 (14)
N3—C101.3702 (12)C16—C171.3905 (16)
N4—C121.3533 (12)C16—H16A0.9300
N4—C11.4129 (12)C17—C181.3903 (17)
N4—H1N40.867 (15)C17—H17A0.9300
C1—C21.3968 (13)C18—C191.3830 (17)
C1—C61.4036 (13)C18—H18A0.9300
C2—C31.3894 (13)C19—C201.3933 (14)
C2—H2A0.9300C19—H19A0.9300
C3—C41.3986 (14)C20—H20A0.9300
C3—S1—C15105.41 (5)H9B—C9—H9C109.5
C8—O2—C9114.73 (9)O3—C10—O4121.17 (9)
C10—O4—C11115.12 (8)O3—C10—N3129.63 (9)
C13—O6—C14110.50 (8)O4—C10—N3109.19 (8)
C7—N1—C6124.93 (8)O4—C11—H11A109.5
C7—N1—H1N1117.1 (10)O4—C11—H11B109.5
C6—N1—H1N1117.9 (10)H11A—C11—H11B109.5
C7—N2—C8127.26 (9)O4—C11—H11C109.5
C7—N2—H1N2112.4 (11)H11A—C11—H11C109.5
C8—N2—H1N2120.3 (11)H11B—C11—H11C109.5
C7—N3—C10119.84 (8)O5—C12—N4125.52 (9)
C12—N4—C1126.38 (8)O5—C12—C13119.76 (9)
C12—N4—H1N4114.6 (10)N4—C12—C13114.73 (8)
C1—N4—H1N4116.7 (10)O6—C13—C12111.85 (8)
C2—C1—C6119.55 (9)O6—C13—H13A109.2
C2—C1—N4120.92 (8)C12—C13—H13A109.2
C6—C1—N4119.44 (8)O6—C13—H13B109.2
C3—C2—C1120.28 (9)C12—C13—H13B109.2
C3—C2—H2A119.9H13A—C13—H13B107.9
C1—C2—H2A119.9O6—C14—H14A109.5
C2—C3—C4120.42 (9)O6—C14—H14B109.5
C2—C3—S1116.29 (7)H14A—C14—H14B109.5
C4—C3—S1123.06 (8)O6—C14—H14C109.5
C5—C4—C3119.24 (9)H14A—C14—H14C109.5
C5—C4—H4A120.4H14B—C14—H14C109.5
C3—C4—H4A120.4C16—C15—C20119.78 (9)
C4—C5—C6121.01 (9)C16—C15—S1123.70 (8)
C4—C5—H5A119.5C20—C15—S1116.38 (8)
C6—C5—H5A119.5C17—C16—C15119.46 (10)
C5—C6—C1119.45 (9)C17—C16—H16A120.3
C5—C6—N1118.02 (8)C15—C16—H16A120.3
C1—C6—N1122.35 (9)C18—C17—C16120.96 (11)
N3—C7—N1118.91 (9)C18—C17—H17A119.5
N3—C7—N2122.61 (9)C16—C17—H17A119.5
N1—C7—N2118.46 (9)C19—C18—C17119.43 (10)
O1—C8—O2125.82 (10)C19—C18—H18A120.3
O1—C8—N2125.50 (9)C17—C18—H18A120.3
O2—C8—N2108.68 (9)C18—C19—C20120.48 (10)
O2—C9—H9A109.5C18—C19—H19A119.8
O2—C9—H9B109.5C20—C19—H19A119.8
H9A—C9—H9B109.5C19—C20—C15119.87 (10)
O2—C9—H9C109.5C19—C20—H20A120.1
H9A—C9—H9C109.5C15—C20—H20A120.1
C12—N4—C1—C2−27.56 (14)C8—N2—C7—N1−3.23 (15)
C12—N4—C1—C6155.89 (9)C9—O2—C8—O1−1.40 (15)
C6—C1—C2—C31.22 (14)C9—O2—C8—N2178.50 (9)
N4—C1—C2—C3−175.32 (9)C7—N2—C8—O1−6.22 (17)
C1—C2—C3—C41.01 (15)C7—N2—C8—O2173.88 (9)
C1—C2—C3—S1175.56 (7)C11—O4—C10—O31.94 (14)
C15—S1—C3—C2142.14 (8)C11—O4—C10—N3−178.42 (8)
C15—S1—C3—C4−43.47 (10)C7—N3—C10—O31.18 (16)
C2—C3—C4—C5−2.11 (15)C7—N3—C10—O4−178.42 (8)
S1—C3—C4—C5−176.27 (8)C1—N4—C12—O5−15.45 (16)
C3—C4—C5—C60.98 (15)C1—N4—C12—C13164.86 (9)
C4—C5—C6—C11.23 (14)C14—O6—C13—C12−176.40 (9)
C4—C5—C6—N1−174.02 (9)O5—C12—C13—O6−179.96 (9)
C2—C1—C6—C5−2.32 (14)N4—C12—C13—O6−0.25 (13)
N4—C1—C6—C5174.27 (9)C3—S1—C15—C16−31.93 (10)
C2—C1—C6—N1172.71 (8)C3—S1—C15—C20152.41 (8)
N4—C1—C6—N1−10.69 (13)C20—C15—C16—C17−0.84 (16)
C7—N1—C6—C5−123.35 (10)S1—C15—C16—C17−176.36 (9)
C7—N1—C6—C161.54 (13)C15—C16—C17—C180.54 (17)
C10—N3—C7—N1−177.78 (8)C16—C17—C18—C190.49 (18)
C10—N3—C7—N20.88 (14)C17—C18—C19—C20−1.21 (16)
C6—N1—C7—N30.55 (14)C18—C19—C20—C150.90 (15)
C6—N1—C7—N2−178.17 (8)C16—C15—C20—C190.14 (15)
C8—N2—C7—N3178.10 (9)S1—C15—C20—C19175.98 (8)
D—H···AD—HH···AD···AD—H···A
N4—H1N4···N30.867 (15)2.104 (15)2.8159 (12)138.9 (13)
N1—H1N1···O10.848 (16)2.058 (15)2.7224 (11)134.7 (13)
N1—H1N1···O5i0.848 (16)2.425 (16)3.1162 (11)139.2 (13)
N2—H1N2···O30.869 (16)1.879 (17)2.6002 (12)139.3 (15)
C9—H9A···O3ii0.962.383.2652 (15)153
C13—H13A···S1iii0.972.803.7678 (11)179
C14—H14B···O1iv0.962.523.3796 (14)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H1N4⋯N30.867 (15)2.104 (15)2.8159 (12)138.9 (13)
N1—H1N1⋯O10.848 (16)2.058 (15)2.7224 (11)134.7 (13)
N1—H1N1⋯O5i0.848 (16)2.425 (16)3.1162 (11)139.2 (13)
N2—H1N2⋯O30.869 (16)1.879 (17)2.6002 (12)139.3 (15)
C9—H9A⋯O3ii0.962.383.2652 (15)153
C13—H13A⋯S1iii0.972.803.7678 (11)179
C14—H14B⋯O1iv0.962.523.3796 (14)149

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Febantel, a new broad-spectrum anthelminthic.

Authors:  H Wollweber; H Kölling; A Widdig; H Thomas; H P Schulz; P Mürmann
Journal:  Arzneimittelforschung       Date:  1978

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.