Literature DB >> 22412472

Bis[1-cyclo-propyl-6-fluoro-4-oxo-7-(1-piperazin-4-ium-1-yl)-1,4-dihydro-quinoline-3-carboxyl-ate-κO,O]bis-(nitrato-κO)copper(II).

Juan Yang1, Shi-Wei Yan, Zhong-Li Ye, Guang-Hua Xin, Suo-Cheng Chang.   

Abstract

In the title complex, [Cu(NO(3))(2)(C(17)H(18)FN(3)O(3))(2)], the Cu(II) ion is located on an inversion center. It exhibits a distorted octa-hedral geometry, being coordinated by six O atoms, four from two ciprofloxacin ligand mol-ecules (L), which act as bidentate ligands, and two from two nitrate anions. In the ligand, the piperazine ring has a chair conformation and the quinoline system is essentially planar [maximum deviation = 0.097 (2) Å]. One of the nitrate O atoms is disordered over two positions [occupancy ratio = 0.51 (6):0.49 (6)]. There is a C-H⋯F inter-action in the complex. In the crystal, mol-ecules are linked via N-H⋯O hydrogen bonds generating a two-dimensional network lying parallel to (111). The presence of C-H⋯O inter-actions leads to the formation of a three-dimensional structure. The title complex was prepared by hydro-thermal synthesis, and the hexa-hydrate form of this complex, synthesized by conventional methods, has been reported previously [Hernandez-Gil et al. (2009 ▶). Polyhedron, 28, 138-144].

Entities:  

Year:  2012        PMID: 22412472      PMCID: PMC3297282          DOI: 10.1107/S1600536812007830

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background on the use of quinolones in the treatment of infections, see: Barbas et al. (2006 ▶); Basavoju et al. (2006 ▶); Xiao et al. (2005 ▶). For the synthesis and crystal structure of the hexa­hydrate form of this complex, see: Hernandez-Gil et al. (2009 ▶).

Experimental

Crystal data

[Cu(NO3)2(C17H18FN3O3)2] M = 850.25 Triclinic, a = 8.8921 (18) Å b = 9.863 (2) Å c = 11.186 (2) Å α = 77.62 (3)° β = 81.95 (3)° γ = 64.15 (3)° V = 861.1 (3) Å3 Z = 1 Mo Kα radiation μ = 0.73 mm−1 T = 293 K 0.50 × 0.48 × 0.35 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.713, T max = 0.785 4702 measured reflections 2935 independent reflections 2766 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.136 S = 1.00 2935 reflections 269 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.34 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812007830/su2380sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007830/su2380Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(NO3)2(C17H18FN3O3)2]Z = 1
Mr = 850.25F(000) = 439
Triclinic, P1Dx = 1.640 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.8921 (18) ÅCell parameters from 4702 reflections
b = 9.863 (2) Åθ = 1.9–25.0°
c = 11.186 (2) ŵ = 0.73 mm1
α = 77.62 (3)°T = 293 K
β = 81.95 (3)°Block, blue
γ = 64.15 (3)°0.50 × 0.48 × 0.35 mm
V = 861.1 (3) Å3
Bruker APEX CCD area-detector diffractometer2935 independent reflections
Radiation source: fine-focus sealed tube2766 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
phi and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.713, Tmax = 0.785k = −11→11
4702 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.124P)2] where P = (Fo2 + 2Fc2)/3
2935 reflections(Δ/σ)max = 0.010
269 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.000000.000000.000000.0353 (2)
F1−0.35238 (18)0.05781 (15)0.56641 (12)0.0421 (4)
O10.0564 (2)−0.19893 (19)−0.03746 (15)0.0468 (5)
O20.13735 (19)−0.44723 (18)0.00732 (14)0.0393 (5)
O3−0.12571 (19)−0.03396 (17)0.14953 (13)0.0363 (5)
O40.471 (2)−0.314 (4)0.2079 (17)0.121 (5)0.51 (6)
O50.2223 (3)−0.2423 (4)0.2922 (2)0.1016 (12)
O60.2794 (3)−0.1278 (3)0.1173 (2)0.0720 (8)
N1−0.14125 (19)−0.43566 (19)0.32933 (15)0.0255 (5)
N2−0.3720 (2)−0.2050 (2)0.69774 (16)0.0292 (5)
N3−0.4207 (3)−0.2834 (2)0.95656 (17)0.0443 (6)
N40.3188 (3)−0.2350 (3)0.20525 (19)0.0497 (8)
C10.0559 (2)−0.3170 (2)0.03294 (18)0.0302 (6)
C2−0.0471 (2)−0.3005 (2)0.15213 (18)0.0267 (6)
C3−0.1197 (2)−0.1630 (2)0.20359 (18)0.0276 (6)
C4−0.1884 (2)−0.1755 (2)0.32806 (17)0.0264 (6)
C5−0.2417 (3)−0.0520 (2)0.39143 (19)0.0315 (6)
C6−0.2984 (3)−0.0651 (2)0.51032 (19)0.0304 (6)
C7−0.3090 (2)−0.2001 (2)0.57654 (18)0.0271 (6)
C8−0.2596 (2)−0.3220 (2)0.51328 (17)0.0267 (5)
C9−0.1994 (2)−0.3108 (2)0.39076 (17)0.0237 (5)
C10−0.0668 (2)−0.4268 (2)0.21705 (17)0.0271 (6)
C11−0.1454 (2)−0.5794 (2)0.39316 (18)0.0283 (6)
C12−0.1739 (3)−0.6783 (3)0.3222 (2)0.0432 (8)
C13−0.3071 (3)−0.5953 (3)0.4123 (2)0.0376 (7)
C14−0.4089 (3)−0.3377 (3)0.75118 (19)0.0328 (7)
C15−0.5121 (3)−0.3117 (3)0.8697 (2)0.0410 (7)
C16−0.3878 (3)−0.1462 (3)0.9029 (2)0.0420 (7)
C17−0.2872 (3)−0.1690 (3)0.78328 (19)0.0347 (6)
O4A0.449 (3)−0.3490 (11)0.1929 (13)0.089 (5)0.49 (6)
H3B−0.48200−0.268601.027600.0530*
H5A−0.238000.039500.351300.0380*
H3A−0.32310−0.365600.972400.0530*
H10A−0.02510−0.513200.180300.0330*
H11A−0.06810−0.634300.459400.0340*
H12A−0.11320−0.788300.344300.0520*
H12B−0.19280−0.641200.235600.0520*
H13A−0.40620−0.508300.379900.0450*
H13B−0.32660−0.655400.488600.0450*
H14A−0.30510−0.428500.766100.0390*
H14B−0.46950−0.354000.694000.0390*
H15A−0.61880−0.224400.854300.0490*
H15B−0.53360−0.400800.905300.0490*
H16A−0.32700−0.129300.959600.0500*
H16B−0.49310−0.056700.889600.0500*
H17A−0.27240−0.076800.746700.0420*
H17B−0.17730−0.251900.798000.0420*
H8A−0.26680−0.412000.553300.0320*
U11U22U33U12U13U23
Cu10.0494 (3)0.0258 (3)0.0272 (3)−0.0183 (2)0.0170 (2)−0.0044 (2)
F10.0648 (8)0.0285 (7)0.0343 (7)−0.0209 (6)0.0109 (6)−0.0136 (5)
O10.0742 (11)0.0322 (9)0.0315 (8)−0.0263 (9)0.0212 (8)−0.0074 (7)
O20.0513 (9)0.0299 (8)0.0326 (8)−0.0148 (7)0.0116 (7)−0.0113 (6)
O30.0487 (8)0.0213 (8)0.0304 (8)−0.0131 (7)0.0152 (6)−0.0018 (6)
O40.064 (5)0.163 (13)0.055 (4)0.015 (7)0.000 (3)0.005 (8)
O50.0879 (17)0.178 (3)0.0495 (13)−0.0775 (19)0.0127 (12)−0.0038 (16)
O60.0717 (13)0.0698 (15)0.0623 (13)−0.0261 (12)0.0013 (11)0.0021 (11)
N10.0326 (8)0.0233 (9)0.0226 (8)−0.0148 (7)0.0013 (6)−0.0028 (6)
N20.0388 (9)0.0288 (9)0.0221 (8)−0.0178 (8)0.0051 (7)−0.0053 (7)
N30.0597 (12)0.0404 (11)0.0237 (9)−0.0153 (10)0.0072 (8)−0.0059 (8)
N40.0666 (14)0.0604 (16)0.0317 (11)−0.0352 (13)−0.0028 (10)−0.0082 (10)
C10.0362 (10)0.0317 (11)0.0246 (10)−0.0165 (9)0.0020 (8)−0.0059 (8)
C20.0314 (9)0.0259 (10)0.0228 (10)−0.0133 (8)0.0009 (7)−0.0029 (7)
C30.0300 (9)0.0243 (10)0.0260 (10)−0.0110 (8)0.0014 (8)−0.0018 (8)
C40.0304 (9)0.0223 (10)0.0250 (10)−0.0116 (8)0.0017 (8)−0.0019 (8)
C50.0417 (10)0.0237 (10)0.0302 (10)−0.0177 (9)0.0027 (8)−0.0008 (8)
C60.0389 (10)0.0258 (11)0.0279 (10)−0.0148 (9)0.0029 (8)−0.0077 (8)
C70.0286 (9)0.0301 (11)0.0237 (10)−0.0137 (9)0.0020 (7)−0.0059 (8)
C80.0327 (9)0.0270 (10)0.0220 (9)−0.0160 (9)−0.0004 (7)−0.0004 (7)
C90.0268 (9)0.0224 (10)0.0228 (9)−0.0119 (8)−0.0009 (7)−0.0028 (7)
C100.0311 (9)0.0258 (10)0.0247 (10)−0.0123 (8)0.0022 (8)−0.0064 (8)
C110.0353 (10)0.0239 (11)0.0279 (10)−0.0156 (9)0.0010 (8)−0.0038 (8)
C120.0637 (14)0.0417 (13)0.0394 (12)−0.0367 (12)0.0117 (11)−0.0148 (10)
C130.0439 (12)0.0423 (13)0.0343 (11)−0.0290 (11)0.0060 (9)−0.0033 (9)
C140.0410 (11)0.0338 (12)0.0267 (11)−0.0208 (10)0.0035 (8)−0.0036 (9)
C150.0488 (12)0.0411 (13)0.0314 (11)−0.0231 (11)0.0090 (10)−0.0006 (9)
C160.0591 (13)0.0348 (12)0.0294 (11)−0.0160 (11)0.0017 (10)−0.0107 (9)
C170.0457 (11)0.0331 (11)0.0279 (10)−0.0177 (10)0.0016 (9)−0.0101 (8)
O4A0.132 (11)0.040 (7)0.050 (5)−0.006 (4)0.011 (5)0.004 (3)
Cu1—O11.9267 (18)C4—C51.408 (3)
Cu1—O31.9293 (16)C4—C91.406 (3)
Cu1—O62.637 (3)C5—C61.355 (3)
Cu1—O1i1.9267 (18)C6—C71.413 (3)
Cu1—O3i1.9293 (16)C7—C81.399 (3)
Cu1—O6i2.637 (3)C8—C91.399 (3)
F1—C61.352 (2)C11—C131.495 (4)
O1—C11.260 (3)C11—C121.500 (3)
O2—C11.243 (2)C12—C131.504 (4)
O3—C31.268 (2)C14—C151.505 (3)
O4—N41.23 (3)C16—C171.503 (3)
O4A—N41.229 (17)C5—H5A0.9300
O5—N41.216 (4)C8—H8A0.9300
O6—N41.239 (3)C10—H10A0.9300
N1—C91.402 (3)C11—H11A0.9800
N1—C111.458 (3)C12—H12A0.9700
N1—C101.339 (3)C12—H12B0.9700
N2—C71.392 (3)C13—H13A0.9700
N2—C141.470 (3)C13—H13B0.9700
N2—C171.480 (3)C14—H14A0.9700
N3—C151.489 (4)C14—H14B0.9700
N3—C161.492 (3)C15—H15A0.9700
N3—H3A0.9000C15—H15B0.9700
N3—H3B0.9000C16—H16A0.9700
C1—C21.505 (3)C16—H16B0.9700
C2—C101.370 (3)C17—H17A0.9700
C2—C31.433 (3)C17—H17B0.9700
C3—C41.443 (3)
O1—Cu1—O393.27 (8)C7—C8—C9121.13 (17)
O1—Cu1—O686.89 (9)N1—C9—C4118.31 (17)
O1—Cu1—O1i180.00C4—C9—C8120.46 (17)
O1—Cu1—O3i86.74 (8)N1—C9—C8121.16 (17)
O1—Cu1—O6i93.11 (9)N1—C10—C2125.14 (18)
O3—Cu1—O690.88 (8)N1—C11—C13119.88 (18)
O1i—Cu1—O386.74 (8)N1—C11—C12119.26 (17)
O3—Cu1—O3i180.00C12—C11—C1360.31 (16)
O3—Cu1—O6i89.12 (8)C11—C12—C1359.67 (17)
O1i—Cu1—O693.11 (9)C11—C13—C1260.02 (17)
O3i—Cu1—O689.12 (8)N2—C14—C15110.3 (2)
O6—Cu1—O6i180.00N3—C15—C14109.6 (2)
O1i—Cu1—O3i93.27 (8)N3—C16—C17110.1 (2)
O1i—Cu1—O6i86.89 (9)N2—C17—C16110.8 (2)
O3i—Cu1—O6i90.88 (8)C4—C5—H5A120.00
Cu1—O1—C1129.10 (15)C6—C5—H5A120.00
Cu1—O3—C3125.15 (14)C7—C8—H8A119.00
Cu1—O6—N4127.7 (2)C9—C8—H8A119.00
C9—N1—C10119.56 (17)N1—C10—H10A117.00
C9—N1—C11119.69 (16)C2—C10—H10A117.00
C10—N1—C11120.40 (16)N1—C11—H11A115.00
C7—N2—C14115.73 (17)C12—C11—H11A115.00
C7—N2—C17116.41 (19)C13—C11—H11A115.00
C14—N2—C17112.28 (18)C11—C12—H12A118.00
C15—N3—C16110.14 (18)C11—C12—H12B118.00
O4—N4—O5122.7 (10)C13—C12—H12A118.00
O4—N4—O6113.2 (11)C13—C12—H12B118.00
O5—N4—O6122.6 (3)H12A—C12—H12B115.00
O4A—N4—O5118.8 (8)C11—C13—H13A118.00
O4A—N4—O6117.4 (7)C11—C13—H13B118.00
C15—N3—H3B110.00C12—C13—H13A118.00
C16—N3—H3A110.00C12—C13—H13B118.00
C15—N3—H3A110.00H13A—C13—H13B115.00
H3A—N3—H3B108.00N2—C14—H14A110.00
C16—N3—H3B110.00N2—C14—H14B110.00
O1—C1—C2119.11 (17)C15—C14—H14A110.00
O1—C1—O2122.29 (19)C15—C14—H14B110.00
O2—C1—C2118.60 (17)H14A—C14—H14B108.00
C3—C2—C10118.39 (18)N3—C15—H15A110.00
C1—C2—C3123.98 (17)N3—C15—H15B110.00
C1—C2—C10117.58 (17)C14—C15—H15A110.00
C2—C3—C4116.32 (17)C14—C15—H15B110.00
O3—C3—C2125.45 (18)H15A—C15—H15B108.00
O3—C3—C4118.23 (17)N3—C16—H16A110.00
C3—C4—C9121.71 (17)N3—C16—H16B110.00
C3—C4—C5120.11 (18)C17—C16—H16A110.00
C5—C4—C9118.15 (18)C17—C16—H16B110.00
C4—C5—C6120.65 (19)H16A—C16—H16B108.00
F1—C6—C5118.54 (18)N2—C17—H17A110.00
C5—C6—C7122.64 (18)N2—C17—H17B110.00
F1—C6—C7118.78 (18)C16—C17—H17A109.00
N2—C7—C8123.21 (18)C16—C17—H17B110.00
N2—C7—C6119.81 (17)H17A—C17—H17B108.00
C6—C7—C8116.94 (18)
O3—Cu1—O1—C1−20.0 (2)C16—N3—C15—C1459.7 (3)
O6—Cu1—O1—C170.7 (2)C15—N3—C16—C17−58.6 (3)
O3i—Cu1—O1—C1160.0 (2)O1—C1—C2—C3−12.9 (3)
O6i—Cu1—O1—C1−109.3 (2)O1—C1—C2—C10169.7 (2)
O1—Cu1—O3—C315.06 (19)O2—C1—C2—C3167.3 (2)
O6—Cu1—O3—C3−71.87 (18)O2—C1—C2—C10−10.1 (3)
O1i—Cu1—O3—C3−164.94 (19)C1—C2—C3—O39.7 (3)
O6i—Cu1—O3—C3108.13 (18)C1—C2—C3—C4−169.18 (18)
O1—Cu1—O6—N4−59.5 (2)C10—C2—C3—O3−172.9 (2)
O3—Cu1—O6—N433.7 (2)C10—C2—C3—C48.3 (3)
O1i—Cu1—O6—N4120.5 (2)C1—C2—C10—N1173.62 (19)
O3i—Cu1—O6—N4−146.3 (2)C3—C2—C10—N1−4.0 (3)
Cu1—O1—C1—O2−159.28 (17)O3—C3—C4—C5−7.5 (3)
Cu1—O1—C1—C220.9 (3)O3—C3—C4—C9174.55 (19)
Cu1—O3—C3—C2−13.6 (3)C2—C3—C4—C5171.5 (2)
Cu1—O3—C3—C4165.31 (14)C2—C3—C4—C9−6.5 (3)
Cu1—O6—N4—O4149.8 (15)C3—C4—C5—C6−176.6 (2)
Cu1—O6—N4—O5−44.3 (4)C9—C4—C5—C61.4 (4)
C10—N1—C9—C44.7 (3)C3—C4—C9—N10.1 (3)
C10—N1—C9—C8−172.32 (19)C3—C4—C9—C8177.10 (19)
C11—N1—C9—C4177.84 (18)C5—C4—C9—N1−177.9 (2)
C11—N1—C9—C80.9 (3)C5—C4—C9—C8−0.9 (3)
C9—N1—C10—C2−2.8 (3)C4—C5—C6—F1−178.3 (2)
C11—N1—C10—C2−175.92 (19)C4—C5—C6—C7−0.6 (4)
C9—N1—C11—C12147.5 (2)F1—C6—C7—N2−0.9 (3)
C9—N1—C11—C1376.9 (2)F1—C6—C7—C8176.9 (2)
C10—N1—C11—C12−39.4 (3)C5—C6—C7—N2−178.5 (2)
C10—N1—C11—C13−110.0 (2)C5—C6—C7—C8−0.7 (4)
C14—N2—C7—C6168.5 (2)N2—C7—C8—C9178.99 (19)
C14—N2—C7—C8−9.2 (3)C6—C7—C8—C91.3 (3)
C17—N2—C7—C6−56.3 (3)C7—C8—C9—N1176.45 (19)
C17—N2—C7—C8126.0 (2)C7—C8—C9—C4−0.5 (3)
C7—N2—C14—C15−166.8 (2)N1—C11—C12—C13−109.8 (2)
C17—N2—C14—C1556.3 (3)N1—C11—C13—C12108.7 (2)
C7—N2—C17—C16168.18 (19)N2—C14—C15—N3−58.1 (3)
C14—N2—C17—C16−55.2 (3)N3—C16—C17—N255.6 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O2ii0.901.862.749 (3)170
N3—H3B···O4iii0.902.002.838 (19)155
N3—H3B···O6iii0.902.212.995 (3)146
C13—H13A···O4iv0.972.403.25 (3)147
C13—H13B···O5ii0.972.583.382 (3)140
C15—H15A···O3v0.972.573.514 (3)165
C17—H17A···F10.972.182.857 (3)125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯O2i0.901.862.749 (3)170
N3—H3B⋯O4ii0.902.002.838 (19)155
N3—H3B⋯O6ii0.902.212.995 (3)146
C13—H13A⋯O4iii0.972.403.25 (3)147
C13—H13B⋯O5i0.972.583.382 (3)140
C15—H15A⋯O3iv0.972.573.514 (3)165
C17—H17A⋯F10.972.182.857 (3)125

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Rationally designed, polymeric, extended metal-ciprofloxacin complexes.

Authors:  Dong-Rong Xiao; En-Bo Wang; Hai-Yan An; Zhong-Min Su; Yang-Guang Li; Lei Gao; Chun-Yan Sun; Lin Xu
Journal:  Chemistry       Date:  2005-11-04       Impact factor: 5.236

  2 in total

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