Literature DB >> 22412435

Poly[[tetra-aqua-di-μ(4)-oxalato-μ(2)-oxalato-dineo-dymium(III)] dihydrate].

Gao-Juan Cao, Cheng Rong, Qing-Lu Li, Wen-Jing Jiang.   

Abstract

The title compound, {[Nd(2)(C(2)O(4))(3)(H(2)O)(4)]·2H(2)O}(n), was synthesized hydro-thermally in the presence of bis-(carb-oxy-ethyl-germanium) sesquioxide. It is isostructural with the corresponding Pr compound [Yang et al. (2009). Acta Cryst. E65, m1152-m1153]. The Nd(3+) cation is nine-coordinated and its coordination polyhedron can be described as a distorted tricapped trigonal prism. Two Nd(3+) ions are connected by two O atoms from two oxalate ions to give a dinuclear Nd(2) unit. The unit is further linked to four others via four oxalate ions yielding a layerparallel to (0-11). The linkages between the layers by neighbouring oxalate anions lead to a three-dimensional framework with channels along the c axis. The coordinating and free water mol-ecules are located in the channels and make contact with each other and the host framework by weak O-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22412435      PMCID: PMC3297245          DOI: 10.1107/S1600536812005016

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the application of lanthanide compounds, see: Kido & Okamoto (2002 ▶). For background to lanthanide oxalates, see: Kahwa et al. (1984 ▶); Trombe & Jaud (2003 ▶); Wang et al. (2008 ▶). For the isostructural Pr compound, see: Yang et al. (2009 ▶).

Experimental

Crystal data

[Nd2(C2O4)3(H2O)4]·2H2O M = 660.64 Triclinic, a = 6.036 (3) Å b = 7.603 (3) Å c = 8.906 (4) Å α = 98.386 (6)° β = 99.742 (3)° γ = 96.802 (5)° V = 394.2 (3) Å3 Z = 1 Mo Kα radiation μ = 6.61 mm−1 T = 293 K 0.05 × 0.05 × 0.05 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.758, T max = 1.000 2997 measured reflections 1721 independent reflections 1600 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.045 S = 1.04 1721 reflections 137 parameters 9 restraints All H-atom parameters refined Δρmax = 1.01 e Å−3 Δρmin = −1.06 e Å−3 Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005016/fi2122sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005016/fi2122Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Nd2(C2O4)3(H2O)4]·2H2OZ = 1
Mr = 660.64F(000) = 312
Triclinic, P1Dx = 2.783 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.036 (3) ÅCell parameters from 1101 reflections
b = 7.603 (3) Åθ = 2.4–27.5°
c = 8.906 (4) ŵ = 6.61 mm1
α = 98.386 (6)°T = 293 K
β = 99.742 (3)°Prism, pink
γ = 96.802 (5)°0.05 × 0.05 × 0.05 mm
V = 394.2 (3) Å3
Rigaku SCXmini diffractometer1721 independent reflections
Radiation source: fine-focus sealed tube1600 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
ω scansθmax = 27.5°, θmin = 3.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −7→7
Tmin = 0.758, Tmax = 1.000k = −9→9
2997 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.019All H-atom parameters refined
wR(F2) = 0.045w = 1/[σ2(Fo2) + (0.0267P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
1721 reflectionsΔρmax = 1.01 e Å3
137 parametersΔρmin = −1.06 e Å3
9 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0250 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Nd0.50918 (3)0.80732 (2)0.795455 (19)0.01243 (9)
O10.3007 (4)0.6414 (3)0.9553 (3)0.0197 (5)
O20.2687 (4)1.0032 (3)0.9482 (3)0.0159 (5)
O30.6296 (4)0.7244 (3)0.5432 (3)0.0194 (5)
O40.7188 (4)0.5888 (3)0.9155 (3)0.0218 (5)
O50.9212 (4)0.8988 (3)0.8085 (3)0.0210 (5)
O60.3574 (5)0.4917 (3)0.6531 (3)0.0227 (5)
C10.3797 (6)0.5159 (4)1.0114 (4)0.0160 (7)
C20.0540 (5)0.9720 (4)0.9295 (4)0.0138 (6)
C30.5789 (6)0.5661 (4)0.4686 (4)0.0163 (7)
O1W0.1774 (4)0.8272 (4)0.5951 (3)0.0303 (7)
H10.052 (5)0.846 (6)0.618 (5)0.045*
H20.145 (7)0.765 (6)0.509 (3)0.045*
O2W0.5617 (5)1.0983 (4)0.7077 (3)0.0283 (6)
H30.461 (5)1.144 (6)0.658 (5)0.042*
H40.680 (4)1.171 (5)0.722 (6)0.042*
O3W0.0780 (5)0.6307 (4)0.2901 (4)0.0390 (8)
H50.105 (8)0.550 (6)0.226 (5)0.059*
H6−0.065 (3)0.620 (7)0.277 (6)0.059*
U11U22U33U12U13U23
Nd0.01250 (11)0.01253 (11)0.01129 (11)−0.00015 (6)0.00267 (6)−0.00003 (6)
O10.0213 (13)0.0226 (13)0.0199 (12)0.0078 (10)0.0081 (10)0.0099 (10)
O20.0100 (11)0.0192 (12)0.0172 (11)0.0004 (9)0.0032 (9)−0.0006 (9)
O30.0231 (13)0.0158 (12)0.0170 (12)−0.0022 (10)0.0058 (10)−0.0027 (10)
O40.0176 (13)0.0249 (13)0.0272 (13)0.0047 (10)0.0086 (10)0.0123 (11)
O50.0137 (11)0.0311 (14)0.0140 (11)−0.0038 (10)0.0023 (9)−0.0034 (10)
O60.0303 (14)0.0191 (12)0.0172 (12)−0.0045 (10)0.0128 (10)−0.0047 (10)
C10.0177 (17)0.0169 (16)0.0125 (15)0.0023 (13)0.0028 (13)−0.0001 (13)
C20.0131 (15)0.0123 (14)0.0153 (16)0.0008 (12)0.0025 (12)0.0014 (13)
C30.0155 (16)0.0179 (17)0.0135 (15)0.0021 (13)0.0000 (12)0.0000 (13)
O1W0.0161 (13)0.0518 (19)0.0197 (13)0.0077 (12)0.0025 (10)−0.0053 (13)
O2W0.0261 (15)0.0227 (14)0.0342 (16)−0.0029 (11)−0.0005 (12)0.0112 (12)
O3W0.0284 (16)0.0440 (18)0.0356 (17)−0.0137 (14)0.0118 (13)−0.0141 (14)
Nd—O12.441 (3)O5—C2iii1.241 (4)
Nd—O2W2.455 (3)O6—C3iv1.248 (4)
Nd—O42.462 (3)C1—O4ii1.258 (5)
Nd—O52.480 (3)C1—C1ii1.542 (7)
Nd—O1W2.481 (3)C2—O5v1.241 (4)
Nd—O32.494 (3)C2—C2vi1.539 (6)
Nd—O62.530 (3)C3—O6iv1.248 (4)
Nd—O2i2.576 (2)C3—C3iv1.532 (7)
Nd—O22.601 (2)O1W—H10.839 (19)
O1—C11.246 (4)O1W—H20.823 (19)
O2—C21.267 (4)O2W—H30.830 (18)
O2—Ndi2.576 (2)O2W—H40.827 (19)
O3—C31.263 (4)O3W—H50.824 (19)
O4—C1ii1.258 (5)O3W—H60.845 (19)
O1—Nd—O2W142.79 (9)O4—Nd—O2120.99 (8)
O1—Nd—O466.13 (8)O5—Nd—O2122.26 (8)
O2W—Nd—O4142.62 (9)O1W—Nd—O276.88 (8)
O1—Nd—O5132.18 (8)O3—Nd—O2146.24 (8)
O2W—Nd—O571.58 (9)O6—Nd—O2122.82 (8)
O4—Nd—O571.43 (9)O2i—Nd—O265.42 (9)
O1—Nd—O1W97.08 (10)C1—O1—Nd120.1 (2)
O2W—Nd—O1W70.46 (10)C2—O2—Ndi118.3 (2)
O4—Nd—O1W142.10 (10)C2—O2—Nd123.74 (19)
O5—Nd—O1W130.44 (10)Ndi—O2—Nd114.58 (8)
O1—Nd—O3134.13 (8)C3—O3—Nd121.0 (2)
O2W—Nd—O377.81 (9)C1ii—O4—Nd119.4 (2)
O4—Nd—O392.73 (9)C2iii—O5—Nd123.2 (2)
O5—Nd—O367.13 (8)C3iv—O6—Nd120.3 (2)
O1W—Nd—O374.66 (9)O1—C1—O4ii126.2 (3)
O1—Nd—O670.15 (8)O1—C1—C1ii117.3 (4)
O2W—Nd—O6132.48 (9)O4ii—C1—C1ii116.5 (4)
O4—Nd—O669.77 (9)O5v—C2—O2126.3 (3)
O5—Nd—O6114.40 (8)O5v—C2—C2vi116.4 (4)
O1W—Nd—O672.59 (10)O2—C2—C2vi117.2 (3)
O3—Nd—O664.28 (8)O6iv—C3—O3125.9 (3)
O1—Nd—O2i85.95 (9)O6iv—C3—C3iv117.0 (4)
O2W—Nd—O2i81.77 (9)O3—C3—C3iv117.1 (4)
O4—Nd—O2i77.35 (8)Nd—O1W—H1122 (3)
O5—Nd—O2i63.77 (7)Nd—O1W—H2124 (3)
O1W—Nd—O2i137.60 (8)H1—O1W—H2105 (3)
O3—Nd—O2i130.55 (8)Nd—O2W—H3126 (3)
O6—Nd—O2i144.97 (8)Nd—O2W—H4128 (3)
O1—Nd—O267.11 (8)H3—O2W—H4106 (3)
O2W—Nd—O275.84 (10)H5—O3W—H6105 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1···O5v0.84 (2)2.00 (3)2.681 (4)138 (4)
O1W—H1···O3v0.84 (2)2.55 (3)3.244 (4)141 (4)
O1W—H2···O3W0.82 (2)2.01 (2)2.833 (4)175 (5)
O2W—H3···O3vii0.83 (2)2.20 (3)2.919 (4)145 (4)
O2W—H4···O3Wvii0.83 (2)2.00 (2)2.809 (4)165 (4)
O3W—H5···O4iv0.82 (2)2.04 (2)2.827 (4)159 (5)
O3W—H6···O6viii0.85 (2)2.10 (4)2.835 (4)146 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1⋯O5i0.84 (2)2.00 (3)2.681 (4)138 (4)
O1W—H1⋯O3i0.84 (2)2.55 (3)3.244 (4)141 (4)
O1W—H2⋯O3W0.82 (2)2.01 (2)2.833 (4)175 (5)
O2W—H3⋯O3ii0.83 (2)2.20 (3)2.919 (4)145 (4)
O2W—H4⋯O3Wii0.83 (2)2.00 (2)2.809 (4)165 (4)
O3W—H5⋯O4iii0.82 (2)2.04 (2)2.827 (4)159 (5)
O3W—H6⋯O6iv0.85 (2)2.10 (4)2.835 (4)146 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  Organo lanthanide metal complexes for electroluminescent materials.

Authors:  Junji Kido; Yoshi Okamoto
Journal:  Chem Rev       Date:  2002-06       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Poly[[diaqua-hemi-μ(4)-oxalato-μ(2)-oxalato-praseodymium(III)] monohydrate].

Authors:  Ting-Hai Yang; Qiang Chen; Wei Zhuang; Zhe Wang; Bang-Yi Yue
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-29
  3 in total

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