Literature DB >> 22411954

RNAimmuno: a database of the nonspecific immunological effects of RNA interference and microRNA reagents.

Marta Olejniczak1, Paulina Galka-Marciniak, Katarzyna Polak, Andrzej Fligier, Wlodzimierz J Krzyzosiak.   

Abstract

The RNAimmuno database was created to provide easy access to information regarding the nonspecific effects generated in cells by RNA interference triggers and microRNA regulators. Various RNAi and microRNA reagents, which differ in length and structure, often cause non-sequence-specific immune responses, in addition to triggering the intended sequence-specific effects. The activation of the cellular sensors of foreign RNA or DNA may lead to the induction of type I interferon and proinflammatory cytokine release. Subsequent changes in the cellular transcriptome and proteome may result in adverse effects, including cell death during therapeutic treatments or the misinterpretation of experimental results in research applications. The manually curated RNAimmuno database gathers the majority of the published data regarding the immunological side effects that are caused in investigated cell lines, tissues, and model organisms by different reagents. The database is accessible at http://rnaimmuno.ibch.poznan.pl and may be helpful in the further application and development of RNAi- and microRNA-based technologies.

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Year:  2012        PMID: 22411954      PMCID: PMC3334701          DOI: 10.1261/rna.025627.110

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  44 in total

1.  Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells.

Authors:  Patrick J Paddison; Amy A Caudy; Emily Bernstein; Gregory J Hannon; Douglas S Conklin
Journal:  Genes Dev       Date:  2002-04-15       Impact factor: 11.361

2.  Specific double-stranded RNA interference in undifferentiated mouse embryonic stem cells.

Authors:  S Yang; S Tutton; E Pierce; K Yoon
Journal:  Mol Cell Biol       Date:  2001-11       Impact factor: 4.272

3.  Both natural and designed micro RNAs can inhibit the expression of cognate mRNAs when expressed in human cells.

Authors:  Yan Zeng; Eric J Wagner; Bryan R Cullen
Journal:  Mol Cell       Date:  2002-06       Impact factor: 17.970

4.  Gene silencing using micro-RNA designed hairpins.

Authors:  Michael T McManus; Christian P Petersen; Brian B Haines; Jianzhu Chen; Phillip A Sharp
Journal:  RNA       Date:  2002-06       Impact factor: 4.942

5.  Expression profiling reveals off-target gene regulation by RNAi.

Authors:  Aimee L Jackson; Steven R Bartz; Janell Schelter; Sumire V Kobayashi; Julja Burchard; Mao Mao; Bin Li; Guy Cavet; Peter S Linsley
Journal:  Nat Biotechnol       Date:  2003-05-18       Impact factor: 54.908

Review 6.  MicroRNA sponges: progress and possibilities.

Authors:  Margaret S Ebert; Phillip A Sharp
Journal:  RNA       Date:  2010-09-20       Impact factor: 4.942

7.  mda-5: An interferon-inducible putative RNA helicase with double-stranded RNA-dependent ATPase activity and melanoma growth-suppressive properties.

Authors:  Dong-chul Kang; Rahul V Gopalkrishnan; Qingping Wu; Eckhard Jankowsky; Anna Marie Pyle; Paul B Fisher
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

8.  Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells.

Authors:  S M Elbashir; J Harborth; W Lendeckel; A Yalcin; K Weber; T Tuschl
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

9.  Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems.

Authors:  N J Caplen; S Parrish; F Imani; A Fire; R A Morgan
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

10.  Recognition of double-stranded RNA and activation of NF-kappaB by Toll-like receptor 3.

Authors:  L Alexopoulou; A C Holt; R Medzhitov; R A Flavell
Journal:  Nature       Date:  2001-10-18       Impact factor: 49.962

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  16 in total

1.  Liposome delivery of microRNA-145 to mesenchymal stem cells leads to immunological off-target effects mediated by RIG-I.

Authors:  Tommy A Karlsen; Jan E Brinchmann
Journal:  Mol Ther       Date:  2013-04-09       Impact factor: 11.454

2.  Serum-stabilized naked caspase-3 siRNA protects autotransplant kidneys in a porcine model.

Authors:  Cheng Yang; Tian Zhao; Zitong Zhao; Yichen Jia; Long Li; Yufang Zhang; Mangen Song; Ruiming Rong; Ming Xu; Michael L Nicholson; Tongyu Zhu; Bin Yang
Journal:  Mol Ther       Date:  2014-06-16       Impact factor: 11.454

Review 3.  Evaluation and control of miRNA-like off-target repression for RNA interference.

Authors:  Heeyoung Seok; Haejeong Lee; Eun-Sook Jang; Sung Wook Chi
Journal:  Cell Mol Life Sci       Date:  2017-09-13       Impact factor: 9.261

Review 4.  The role of the immune system in triplet repeat expansion diseases.

Authors:  Marta Olejniczak; Martyna O Urbanek; Wlodzimierz J Krzyzosiak
Journal:  Mediators Inflamm       Date:  2015-03-22       Impact factor: 4.711

5.  Sequence-specific inhibition of microRNA via CRISPR/CRISPRi system.

Authors:  Yicheng Zhao; Zhen Dai; Yang Liang; Ming Yin; Kuiying Ma; Mei He; Hongsheng Ouyang; Chun-Bo Teng
Journal:  Sci Rep       Date:  2014-02-03       Impact factor: 4.379

Review 6.  Oligonucleotide-based strategies to combat polyglutamine diseases.

Authors:  Agnieszka Fiszer; Wlodzimierz J Krzyzosiak
Journal:  Nucleic Acids Res       Date:  2014-05-21       Impact factor: 16.971

7.  Antitumor and Antimetastatic Effect of Small Immunostimulatory RNA against B16 Melanoma in Mice.

Authors:  Tatyana O Kabilova; Aleksandra V Sen'kova; Valeriy P Nikolin; Nelly A Popova; Marina A Zenkova; Valentin V Vlassov; Elena L Chernolovskaya
Journal:  PLoS One       Date:  2016-03-16       Impact factor: 3.240

8.  Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants.

Authors:  Kumardeep Chaudhary; Gandharva Nagpal; Sandeep Kumar Dhanda; Gajendra P S Raghava
Journal:  Sci Rep       Date:  2016-02-10       Impact factor: 4.379

9.  RNAi induces innate immunity through multiple cellular signaling pathways.

Authors:  Zhongji Meng; Xiaoyong Zhang; Jun Wu; Rongjuan Pei; Yang Xu; Dongliang Yang; Michael Roggendorf; Mengji Lu
Journal:  PLoS One       Date:  2013-05-20       Impact factor: 3.240

10.  Immunotherapy of hepatocellular carcinoma with small double-stranded RNA.

Authors:  Tatyana O Kabilova; Larisa V Kovtonyuk; Evgeniy V Zonov; Elena I Ryabchikova; Nelly A Popova; Valeriy P Nikolin; Vasiliy I Kaledin; Marina A Zenkova; Valentin V Vlassov; Elena L Chernolovskaya
Journal:  BMC Cancer       Date:  2014-05-18       Impact factor: 4.430

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