Literature DB >> 22408576

Where to Publish and Find Ontologies? A Survey of Ontology Libraries.

Mathieu d'Aquin1, Natalya F Noy.   

Abstract

One of the key promises of the Semantic Web is its potential to enable and facilitate data interoperability. The ability of data providers and application developers to share and reuse ontologies is a critical component of this data interoperability: if different applications and data sources use the same set of well defined terms for describing their domain and data, it will be much easier for them to "talk" to one another. Ontology libraries are the systems that collect ontologies from different sources and facilitate the tasks of finding, exploring, and using these ontologies. Thus ontology libraries can serve as a link in enabling diverse users and applications to discover, evaluate, use, and publish ontologies. In this paper, we provide a survey of the growing-and surprisingly diverse-landscape of ontology libraries. We highlight how the varying scope and intended use of the libraries a ects their features, content, and potential exploitation in applications. From reviewing eleven ontology libraries, we identify a core set of questions that ontology practitioners and users should consider in choosing an ontology library for finding ontologies or publishing their own. We also discuss the research challenges that emerge from this survey, for the developers of ontology libraries to address.

Entities:  

Year:  2012        PMID: 22408576      PMCID: PMC3293483          DOI: 10.1016/j.websem.2011.08.005

Source DB:  PubMed          Journal:  Web Semant        ISSN: 1570-8268            Impact factor:   1.897


  6 in total

1.  The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Authors:  Barry Smith; Michael Ashburner; Cornelius Rosse; Jonathan Bard; William Bug; Werner Ceusters; Louis J Goldberg; Karen Eilbeck; Amelia Ireland; Christopher J Mungall; Neocles Leontis; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; Richard H Scheuermann; Nigam Shah; Patricia L Whetzel; Suzanna Lewis
Journal:  Nat Biotechnol       Date:  2007-11       Impact factor: 54.908

Review 2.  Biomedical ontologies: a functional perspective.

Authors:  Daniel L Rubin; Nigam H Shah; Natalya F Noy
Journal:  Brief Bioinform       Date:  2007-12-12       Impact factor: 11.622

3.  LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime.

Authors:  Jyotishman Pathak; Harold R Solbrig; James D Buntrock; Thomas M Johnson; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2009-03-04       Impact factor: 4.497

4.  Generating application ontologies from reference ontologies.

Authors:  Marianne Shaw; Landon T Detwiler; James F Brinkley; Dan Suciu
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

5.  BioPortal: ontologies and integrated data resources at the click of a mouse.

Authors:  Natalya F Noy; Nigam H Shah; Patricia L Whetzel; Benjamin Dai; Michael Dorf; Nicholas Griffith; Clement Jonquet; Daniel L Rubin; Margaret-Anne Storey; Christopher G Chute; Mark A Musen
Journal:  Nucleic Acids Res       Date:  2009-05-29       Impact factor: 16.971

6.  The Ontology Lookup Service: more data and better tools for controlled vocabulary queries.

Authors:  Richard G Côté; Philip Jones; Lennart Martens; Rolf Apweiler; Henning Hermjakob
Journal:  Nucleic Acids Res       Date:  2008-05-08       Impact factor: 16.971

  6 in total
  3 in total

1.  An Ontology to Standardize Research Output of Nutritional Epidemiology: From Paper-Based Standards to Linked Content.

Authors:  Chen Yang; Henry Ambayo; Bernard De Baets; Patrick Kolsteren; Nattapon Thanintorn; Dana Hawwash; Jildau Bouwman; Antoon Bronselaer; Filip Pattyn; Carl Lachat
Journal:  Nutrients       Date:  2019-06-08       Impact factor: 5.717

2.  Effects of guideline-based training on the quality of formal ontologies: a randomized controlled trial.

Authors:  Martin Boeker; Ludger Jansen; Niels Grewe; Johannes Röhl; Daniel Schober; Djamila Seddig-Raufie; Stefan Schulz
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

3.  Activities of Daily Living Ontology for Ubiquitous Systems: Development and Evaluation.

Authors:  Przemysław R Woznowski; Emma L Tonkin; Peter A Flach
Journal:  Sensors (Basel)       Date:  2018-07-20       Impact factor: 3.576

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.