Literature DB >> 22407016

Diverse HIV viruses are targeted by a conformationally dynamic antiviral.

Matthew E C Caines1, Katsiaryna Bichel, Amanda J Price, William A McEwan, Greg J Towers, Brian J Willett, Stefan M V Freund, Leo C James.   

Abstract

Rhesus macaque TRIMCyp (RhTC) is a potent primate antiviral host protein that inhibits the replication of diverse HIV viruses. Here we show that it has acquired the ability to target multiple viruses by evolving an active site that interconverts between multiple conformations. Mutations that have relieved active site constraints allow RhTC to dynamically sample conformational space, including radically different conformers that target both HIV-1 and HIV-2 viruses. Introduction of a reversible constraint into RhTC allows specificity to be switched between a single conformation specific for HIV-1 and a dynamic ensemble that targets multiple viruses. These results show that conformational diversity can be used to expand the target diversity of innate immune receptors by supplementing their limited genetic variability with variability in protein structure.

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Year:  2012        PMID: 22407016      PMCID: PMC3407371          DOI: 10.1038/nsmb.2253

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  28 in total

1.  Hexagonal assembly of a restricting TRIM5alpha protein.

Authors:  Barbie K Ganser-Pornillos; Viswanathan Chandrasekaran; Owen Pornillos; Joseph G Sodroski; Wesley I Sundquist; Mark Yeager
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

2.  Structural insights into the catalytic mechanism of cyclophilin A.

Authors:  Bruce R Howard; Felix F Vajdos; Su Li; Wesley I Sundquist; Christopher P Hill
Journal:  Nat Struct Biol       Date:  2003-06

3.  Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1.

Authors:  David M Sayah; Elena Sokolskaja; Lionel Berthoux; Jeremy Luban
Journal:  Nature       Date:  2004-07-07       Impact factor: 49.962

4.  Retrovirus resistance factors Ref1 and Lv1 are species-specific variants of TRIM5alpha.

Authors:  Theodora Hatziioannou; David Perez-Caballero; Annie Yang; Simone Cowan; Paul D Bieniasz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-12       Impact factor: 11.205

5.  The human and African green monkey TRIM5alpha genes encode Ref1 and Lv1 retroviral restriction factor activities.

Authors:  Zuzana Keckesova; Laura M J Ylinen; Greg J Towers
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-12       Impact factor: 11.205

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  A lion lentivirus related to feline immunodeficiency virus: epidemiologic and phylogenetic aspects.

Authors:  E W Brown; N Yuhki; C Packer; S J O'Brien
Journal:  J Virol       Date:  1994-09       Impact factor: 5.103

8.  Restriction of foamy viruses by primate Trim5alpha.

Authors:  Melvyn W Yap; Dirk Lindemann; Nicole Stanke; Juliane Reh; Dana Westphal; Helmut Hanenberg; Sadayuki Ohkura; Jonathan P Stoye
Journal:  J Virol       Date:  2008-03-26       Impact factor: 5.103

9.  Similarities and differences between human cyclophilin A and other beta-barrel structures. Structural refinement at 1.63 A resolution.

Authors:  H Ke
Journal:  J Mol Biol       Date:  1992-11-20       Impact factor: 5.469

10.  Automated NMR relaxation dispersion data analysis using NESSY.

Authors:  Michael Bieri; Paul R Gooley
Journal:  BMC Bioinformatics       Date:  2011-10-27       Impact factor: 3.169

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  14 in total

1.  General Model for Retroviral Capsid Pattern Recognition by TRIM5 Proteins.

Authors:  Jonathan M Wagner; Devin E Christensen; Akash Bhattacharya; Daria M Dawidziak; Marcin D Roganowicz; Yueping Wan; Ruth A Pumroy; Borries Demeler; Dmitri N Ivanov; Barbie K Ganser-Pornillos; Wesley I Sundquist; Owen Pornillos
Journal:  J Virol       Date:  2018-01-30       Impact factor: 5.103

2.  Biophysics of protein evolution and evolutionary protein biophysics.

Authors:  Tobias Sikosek; Hue Sun Chan
Journal:  J R Soc Interface       Date:  2014-11-06       Impact factor: 4.118

Review 3.  The innate immune roles of host factors TRIM5α and Cyclophilin A on HIV-1 replication.

Authors:  Yi-Qun Kuang; Hong-Liang Liu; Yong-Tang Zheng
Journal:  Med Microbiol Immunol       Date:  2015-04-19       Impact factor: 3.402

4.  Modular HIV-1 Capsid Assemblies Reveal Diverse Host-Capsid Recognition Mechanisms.

Authors:  Brady J Summers; Katherine M Digianantonio; Sarah S Smaga; Pei-Tzu Huang; Kaifeng Zhou; Eva E Gerber; Wei Wang; Yong Xiong
Journal:  Cell Host Microbe       Date:  2019-08-14       Impact factor: 21.023

Review 5.  Restriction of HIV-1 and other retroviruses by TRIM5.

Authors:  Barbie K Ganser-Pornillos; Owen Pornillos
Journal:  Nat Rev Microbiol       Date:  2019-07-16       Impact factor: 60.633

6.  Evolutionary dynamics on protein bi-stability landscapes can potentially resolve adaptive conflicts.

Authors:  Tobias Sikosek; Erich Bornberg-Bauer; Hue Sun Chan
Journal:  PLoS Comput Biol       Date:  2012-09-13       Impact factor: 4.475

Review 7.  An evolutionary perspective on the broad antiviral specificity of MxA.

Authors:  Patrick S Mitchell; Michael Emerman; Harmit S Malik
Journal:  Curr Opin Microbiol       Date:  2013-05-28       Impact factor: 7.934

8.  Primate TRIM5 proteins form hexagonal nets on HIV-1 capsids.

Authors:  Yen-Li Li; Viswanathan Chandrasekaran; Stephen D Carter; Cora L Woodward; Devin E Christensen; Kelly A Dryden; Owen Pornillos; Mark Yeager; Barbie K Ganser-Pornillos; Grant J Jensen; Wesley I Sundquist
Journal:  Elife       Date:  2016-06-02       Impact factor: 8.140

Review 9.  Are Evolution and the Intracellular Innate Immune System Key Determinants in HIV Transmission?

Authors:  Rebecca P Sumner; Lucy G Thorne; Doug L Fink; Hataf Khan; Richard S Milne; Greg J Towers
Journal:  Front Immunol       Date:  2017-10-06       Impact factor: 7.561

Review 10.  Cellular self-defense: how cell-autonomous immunity protects against pathogens.

Authors:  Felix Randow; John D MacMicking; Leo C James
Journal:  Science       Date:  2013-05-10       Impact factor: 47.728

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