Literature DB >> 22390940

CentiLib: comprehensive analysis and exploration of network centralities.

Johannes Gräßler1, Dirk Koschützki, Falk Schreiber.   

Abstract

UNLABELLED: CentiLib is a library and plug-in for the comprehensive analysis and exploration of network centralities. It provides 17 different node centrality and four graph centrality measures in a user-friendly interface and supports the exploration of analysis results within the networks. Its architecture allows for easy adaption to Java-based network analysis, simulation and visualization tools, which is demonstrated by providing the plug-in for two popular network analysis tools-Cytoscape and Vanted. With the ability to quantitatively analyze biological networks in an interactive and visual manner, CentiLib supports a better understanding of complex biological networks and processes.
AVAILABILITY AND IMPLEMENTATION: Software with manual and tutorials is freely available at http://centilib.ipk-gatersleben.de/.

Mesh:

Year:  2012        PMID: 22390940     DOI: 10.1093/bioinformatics/bts106

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  8 in total

1.  A methodology and theoretical taxonomy for centrality measures: What are the best centrality indicators for student networks?

Authors:  Kristel Vignery; Wim Laurier
Journal:  PLoS One       Date:  2020-12-30       Impact factor: 3.240

Review 2.  Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Authors:  Peter Csermely; Tamás Korcsmáros; Huba J M Kiss; Gábor London; Ruth Nussinov
Journal:  Pharmacol Ther       Date:  2013-02-04       Impact factor: 12.310

3.  VANTED v2: a framework for systems biology applications.

Authors:  Hendrik Rohn; Astrid Junker; Anja Hartmann; Eva Grafahrend-Belau; Hendrik Treutler; Matthias Klapperstück; Tobias Czauderna; Christian Klukas; Falk Schreiber
Journal:  BMC Syst Biol       Date:  2012-11-10

Review 4.  Integrated network analysis and effective tools in plant systems biology.

Authors:  Atsushi Fukushima; Shigehiko Kanaya; Kozo Nishida
Journal:  Front Plant Sci       Date:  2014-11-04       Impact factor: 5.753

5.  A systematic survey of centrality measures for protein-protein interaction networks.

Authors:  Minoo Ashtiani; Ali Salehzadeh-Yazdi; Zahra Razaghi-Moghadam; Holger Hennig; Olaf Wolkenhauer; Mehdi Mirzaie; Mohieddin Jafari
Journal:  BMC Syst Biol       Date:  2018-07-31

6.  Mental-Map Preserving Visualisation of Partitioned Networks in Vanted.

Authors:  Dimitar Garkov; Karsten Klein; Christian Klukas; Falk Schreiber
Journal:  J Integr Bioinform       Date:  2019-06-14

7.  A rice protein interaction network reveals high centrality nodes and candidate pathogen effector targets.

Authors:  Bharat Mishra; Nilesh Kumar; M Shahid Mukhtar
Journal:  Comput Struct Biotechnol J       Date:  2022-04-21       Impact factor: 6.155

8.  CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis.

Authors:  Mahdi Jalili; Ali Salehzadeh-Yazdi; Yazdan Asgari; Seyed Shahriar Arab; Marjan Yaghmaie; Ardeshir Ghavamzadeh; Kamran Alimoghaddam
Journal:  PLoS One       Date:  2015-11-16       Impact factor: 3.240

  8 in total

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