| Literature DB >> 22389666 |
Yongyi Yuan1, Xun Zhang, Shasha Huang, Lujie Zuo, Guozheng Zhang, Yueshuai Song, Guojian Wang, Hongtian Wang, Deliang Huang, Dongyi Han, Pu Dai.
Abstract
BACKGROUND: Thirty thousand infants are born every year with congenital hearing impairment in mainland China. Racial and regional factors are important in clinical diagnosis of genetic deafness. However, molecular etiology of hearing impairment in the Tibetan Chinese population living in the Tibetan Plateau has not been investigated. To provide appropriate genetic testing and counseling to Tibetan families, we investigated molecular etiology of nonsyndromic deafness in this population.Entities:
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Year: 2012 PMID: 22389666 PMCID: PMC3289614 DOI: 10.1371/journal.pone.0030720
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Genotypes of GJB2 gene in Tibetan patients with hearing loss and Tibetan controls.
| Allele 1 | Allele 2 | numbers found in patients | numbers found in controls | ||||
| Nucleotide Change | Consequence or amino acid change | Category | Nucleotide change | Consequence or amino acid Change | Category | ||
| c.235delC | Frameshift TM2 | Pathogenic | 1 | 0 | |||
| c.299_300delAT | Frameshift IC2 | Pathogenic | 1 | 0 | |||
| c.341A>G | p.E114G IC2 | Polymorphism | c.79G>A, c.341A>G | p.V27I,p.E114G | Polymorphism | 1 | 0 |
| c.79G>A | p.V27I | Polymorphism | c.79G>A, c.341A>G | p.V27I,p.E114G | Polymorphism | 3 | 1 |
| c.79G>A, c.341A>G | p.V27I,p.E114G | Polymorphism | - | 15 | 24 | ||
| c.79G>A, c.341A>G | p.V27I,p.E114G | Polymorphism | c.79G>A, c.341A>G | p.V27I,p.E114G | Polymorphism | 2 | 1 |
| c.341A>G | p.E114G | Polymorphism | 1 | 0 | |||
| c.79G>A | p.V27I TM1 | Polymorphism | 15 | 16 | |||
| c.79G>A | p.V27I | Polymorphism | c.79G>A | p.V27I | Polymorphism | 1 | 3 |
| c.79G>A | p.V27I | Polymorphism | c.380G>A | p.R127H | Pathogenic | 3 | 0 |
| c.79G>A | p.V27I | Polymorphism | c.368C>A | p.T123N IC2 | Polymorphism | 0 | 2 |
| c.380G>A | p.R127H IC2 | Pathogenic | c.79G>A, c.341A>G | p.V27I,p.E114G | Polymorphism | 6 | 0 |
| c.380G>A | p.R127H | Pathogenic | c.457G>A | p.V153I TM3 | Polymorphism | 1 | 0 |
| c.380G>A | p.R127H | Pathogenic | 5 | 0 | |||
| c.109G>A | cp.V37I, TM1 | cSee note | 1 | 0 | |||
| c.109G>A | cp.V37I | cSee note | c.380G>A | p.R127H | Pathogenic | 1 | 0 |
| c.608T>C | p.I203T TM4 | Polymorphism | 1 | 2 | |||
| c.95G>A | p.R32H TM1 | Pathogenic | 0 | 1 | |||
| c.438C>T | p.F146F TM3 | Polymorphism | 2 | 1 |
TM, transmembrane domain; EC, extracellular domain; IC, intracellular domain.
Note: p.V37I is controversy variant, see the discussion.
Genotypes and phenotype of SLC26A4 gene in Tibetan patients with hearing loss.
| Allele 1 | Allele 2 | numbers found in patients | Tempornal bone CT scan phenotype | ||||
| Nucleotide Change | Amino acid change | Category | Nucleotide change | Amino acid change | Category | ||
| c. 1826T>G | p.V609G | Polymorphism | intron18-56delCAAA | intron variant | 1 | hypoplastic cochlea, enlargement of IAC | |
| c. 1826T>G | p.V609G | Polymorphism | intron18-56delCAAA | intron variant | 3 | nl | |
| c.273A>T | p.G91G | Silent variant | . | 1 | Stenosis of IAC | ||
| c.753C>T | p.L251L | Silent variant | 1 | nl | |||
| c.757A>G | p.I253V | Polymorphism | 1 | hypoplastic cochleavestibular and semicircular canals | |||
| c.1522A>G | p.T508A | Less likely be Pathogenic or exon variant | 1 | nl | |||
| IVS13+9C>T | aberrant splicing | intron variant | 1 | nl |
nl, normal; EVA, enlarged vestibular aqueduct; IVS7, intravening sequence 7 (intron 7); IVS13, intravening sequence 13 (intron 13);IVS15, intravening sequence 15 (intron 15);IVS18, intravening sequence 18 (intron 18);IAC,internal auditory canal.
Temporal bone CT Scan Phenotype in Chinese Tibetan patients with hearing loss.
| Phenotype | numbers found in patients | Numbers of ears found in patients | |
| a | incomplete partition type I | 1 | 1 |
| b | common cavity deforrmity | c1 | 1 |
| c | malformation of inner ears including cochlea,vestibular and semicircular canals | 10 | 18 |
| d | malformation of cochlea and enlargement of internal auditory canals | 1 | 2 |
| e | narrow internal auditory canal | 3 | 6 |
| f | malformation of vestibular and semicircular canals | 5 | 6 |
| g | malformation of semicircular canals | 1 | 1 |
| h | malformation of cochlea | 1 | 1 |
| i | ossification of the inner ear | 1 | 1 |
| j | enlarged vestibular aqueduct | 0 | 0 |
Note:One patient shows common cavity deforrmity in the right ear and incomplete partition type I in the left ear.
Figure 1CT images of inner ear malformation in Tibetan patients with hearing impairment.
a. incomplete partition type I b. common cavity deforrmity c. malformation of inner ears including cochlea,vestibular and semicircular canals d. malformation of cochlea and enlargement of internal auditory canals e. narrow internal auditory canal f. malformation of vestibular and semicircular canals g. malformation of semicircular canals h. malformation of cochlea i. ossification of the inner ear.