Literature DB >> 22388956

Further evidence that interfacial water is the main "driving force" of protein dynamics: a neutron scattering study on perdeuterated C-phycocyanin.

Sophie Combet1, Jean-Marc Zanotti.   

Abstract

The fundamental role of hydration water (also called interfacial water) is widely recognized in protein flexibility, especially in the existence of the so-called protein "dynamical transition" at around 220 K. In the present study, we take advantage of perdeuterated C-phycocyanin (CPC) and elastic incoherent neutron scattering (EINS) to distinguish between protein dynamics and interfacial water dynamics. Powders of hydrogenated (hCPC) and perdeuterated (dCPC) CPC protein have been hydrated, respectively, with D(2)O or H(2)O and measured by EINS to separately probe protein dynamics (hCPC/D(2)O) and water dynamics (dCPC/H(2)O) at different time- and length-scales. We find that "fast" (<20 ps) local mean-square displacements (MSD) of both protein and interfacial water coincide all along the temperature range, with the same dynamical transition temperature at ~220 K. On higher resolution (<400 ps), two different types of motions can be separated: (i) localized motions with the same amplitude for CPC and hydration water and two transitions at ~170 and ~240 K for both; (ii) large scale fluctuations exhibiting for both water molecules and CPC protein a single transition at ~240 K, with a significantly higher amplitude for the interfacial water than for CPC. Moreover, by comparing these motions with bulk water MSD measured under the same conditions, we show no coupling between bulk water dynamics and protein dynamics all along the temperature range. These results show that interfacial water is the main "driving force" governing both local and large scale motions in proteins.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22388956     DOI: 10.1039/c2cp23725c

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  7 in total

1.  Variability of the Cyclin-Dependent Kinase 2 Flexibility Without Significant Change in the Initial Conformation of the Protein or Its Environment; a Computational Study.

Authors:  Mohammad Taghizadeh; Bahram Goliaei; Armin Madadkar-Sobhani
Journal:  Iran J Biotechnol       Date:  2016-06       Impact factor: 1.671

2.  Dynamics Properties of Photosynthetic Microorganisms Probed by Incoherent Neutron Scattering.

Authors:  Daniela Russo; Maya Dimova Lambreva; Christiane Alba Simionesco; Pierre Sebban; Giuseppina Rea
Journal:  Biophys J       Date:  2019-04-02       Impact factor: 4.033

3.  Evidence of a low-temperature dynamical transition in concentrated microgels.

Authors:  Marco Zanatta; Letizia Tavagnacco; Elena Buratti; Monica Bertoldo; Francesca Natali; Ester Chiessi; Andrea Orecchini; Emanuela Zaccarelli
Journal:  Sci Adv       Date:  2018-09-28       Impact factor: 14.136

4.  The molecular dynamics of bacterial spore and the role of calcium dipicolinate in core properties at the sub-nanosecond time-scale.

Authors:  Alexandre Colas de la Noue; Francesca Natali; Fatima Fekraoui; Patrick Gervais; Nicolas Martinez; Jean-Marie Perrier-Cornet; Judith Peters
Journal:  Sci Rep       Date:  2020-05-19       Impact factor: 4.379

5.  Protein-Water and Water-Water Long-Time Relaxations in Protein Hydration Water upon Cooling-A Close Look through Density Correlation Functions.

Authors:  Lorenzo Tenuzzo; Gaia Camisasca; Paola Gallo
Journal:  Molecules       Date:  2020-10-07       Impact factor: 4.411

6.  Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures.

Authors:  Lada Biedermannová; Bohdan Schneider
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-10-27

7.  Interfacial Water Many-Body Effects Drive Structural Dynamics and Allosteric Interactions in SARS-CoV-2 Main Protease Dimerization Interface.

Authors:  Dina El Ahdab; Louis Lagardère; Théo Jaffrelot Inizan; Fréderic Célerse; Chengwen Liu; Olivier Adjoua; Luc-Henri Jolly; Nohad Gresh; Zeina Hobaika; Pengyu Ren; Richard G Maroun; Jean-Philip Piquemal
Journal:  J Phys Chem Lett       Date:  2021-07-01       Impact factor: 6.475

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.