Literature DB >> 22387842

The use of next generation sequencing technology to study the effect of radiation therapy on mitochondrial DNA mutation.

Yan Guo1, Qiuyin Cai, David C Samuels, Fei Ye, Jirong Long, Chung-I Li, Jeanette F Winther, E Janet Tawn, Marilyn Stovall, Päivi Lähteenmäki, Nea Malila, Shawn Levy, Christian Shaffer, Yu Shyr, Xiao-Ou Shu, John D Boice.   

Abstract

The human mitochondrial genome has an exclusively maternal mode of inheritance. Mitochondrial DNA (mtDNA) is particularly vulnerable to environmental insults due in part to an underdeveloped DNA repair system, limited to base excision and homologous recombination repair. Radiation exposure to the ovaries may cause mtDNA mutations in oocytes, which may in turn be transmitted to offspring. We hypothesized that the children of female cancer survivors who received radiation therapy may have an increased rate of mtDNA heteroplasmy mutations, which conceivably could increase their risk of developing cancer and other diseases. We evaluated 44 DNA blood samples from 17 Danish and 1 Finnish families (18 mothers and 26 children). All mothers had been treated for cancer as children and radiation doses to their ovaries were determined based on medical records and computational models. DNA samples were sequenced for the entire mitochondrial genome using the Illumina GAII system. Mother's age at sample collection was positively correlated with mtDNA heteroplasmy mutations. There was evidence of heteroplasmy inheritance in that 9 of the 18 families had at least one child who inherited at least one heteroplasmy site from his or her mother. No significant difference in single nucleotide polymorphisms between mother and offspring, however, was observed. Radiation therapy dose to ovaries also was not significantly associated with the heteroplasmy mutation rate among mothers and children. No evidence was found that radiotherapy for pediatric cancer is associated with the mitochondrial genome mutation rate in female cancer survivors and their children.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22387842      PMCID: PMC3354959          DOI: 10.1016/j.mrgentox.2012.02.006

Source DB:  PubMed          Journal:  Mutat Res        ISSN: 0027-5107            Impact factor:   2.433


  38 in total

1.  Detection of damage to the mitochondrial genome in the oncocytic cells of Warthin's tumour.

Authors:  P D Lewis; P Baxter; A Paul Griffiths; J M Parry; D O Skibinski
Journal:  J Pathol       Date:  2000-07       Impact factor: 7.996

2.  Natural radioactivity and human mitochondrial DNA mutations.

Authors:  Lucy Forster; Peter Forster; Sabine Lutz-Bonengel; Horst Willkomm; Bernd Brinkmann
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-07       Impact factor: 11.205

3.  Mutations in SDHD, a mitochondrial complex II gene, in hereditary paraganglioma.

Authors:  B E Baysal; R E Ferrell; J E Willett-Brozick; E C Lawrence; D Myssiorek; A Bosch; A van der Mey; P E Taschner; W S Rubinstein; E N Myers; C W Richard; C J Cornelisse; P Devilee; B Devlin
Journal:  Science       Date:  2000-02-04       Impact factor: 47.728

4.  Mitochondrial proteome: altered cytochrome c oxidase subunit levels in prostate cancer.

Authors:  Paul C Herrmann; John W Gillespie; Lu Charboneau; Verena E Bichsel; Cloud P Paweletz; Valerie S Calvert; Elise C Kohn; Michael R Emmert-Buck; Lance A Liotta; Emanuel F Petricoin
Journal:  Proteomics       Date:  2003-09       Impact factor: 3.984

5.  Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells.

Authors:  E D Robin; R Wong
Journal:  J Cell Physiol       Date:  1988-09       Impact factor: 6.384

6.  Early-onset renal cell carcinoma as a novel extraparaganglial component of SDHB-associated heritable paraganglioma.

Authors:  Sakari Vanharanta; Mary Buchta; Sarah R McWhinney; Sanna K Virta; Mariola Peçzkowska; Carl D Morrison; Rainer Lehtonen; Andrzej Januszewicz; Heikki Järvinen; Matti Juhola; Jukka-Pekka Mecklin; Eero Pukkala; Riitta Herva; Maija Kiuru; Nina N Nupponen; Lauri A Aaltonen; Hartmut P H Neumann; Charis Eng
Journal:  Am J Hum Genet       Date:  2003-12-18       Impact factor: 11.025

7.  Transition and transversion rate in the evolution of animal mitochondrial DNA.

Authors:  C Lanave; S Tommasi; G Preparata; C Saccone
Journal:  Biosystems       Date:  1986       Impact factor: 1.973

8.  A heteroplasmic, not homoplasmic, mitochondrial DNA mutation promotes tumorigenesis via alteration in reactive oxygen species generation and apoptosis.

Authors:  Jeong Soon Park; Lokendra Kumar Sharma; Hongzhi Li; Ruihua Xiang; Deborah Holstein; Jun Wu; James Lechleiter; Susan L Naylor; Janice J Deng; Jianxin Lu; Yidong Bai
Journal:  Hum Mol Genet       Date:  2009-02-10       Impact factor: 6.150

9.  Genetic effects of radiotherapy for childhood cancer: gonadal dose reconstruction.

Authors:  Marilyn Stovall; Sarah S Donaldson; Rita E Weathers; Leslie L Robison; Ann C Mertens; Jeanette Falck Winther; Jorgen H Olsen; John D Boice
Journal:  Int J Radiat Oncol Biol Phys       Date:  2004-10-01       Impact factor: 8.013

10.  Genetic effects of radiotherapy for childhood cancer.

Authors:  John D Boice; E Janet Tawn; Jeanette F Winther; Sarah S Donaldson; Daniel M Green; Ann C Mertens; John J Mulvihill; Jørgen H Olsen; Leslie L Robison; Marilyn Stovall
Journal:  Health Phys       Date:  2003-07       Impact factor: 2.922

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  19 in total

1.  Mitochondria sequence mapping strategies and practicability of mitochondria variant detection from exome and RNA sequencing data.

Authors:  Pan Zhang; David C Samuels; Brian Lehmann; Thomas Stricker; Jennifer Pietenpol; Yu Shyr; Yan Guo
Journal:  Brief Bioinform       Date:  2015-08-05       Impact factor: 11.622

Review 2.  Three-stage quality control strategies for DNA re-sequencing data.

Authors:  Yan Guo; Fei Ye; Quanghu Sheng; Travis Clark; David C Samuels
Journal:  Brief Bioinform       Date:  2013-09-24       Impact factor: 11.622

Review 3.  High-throughput sequencing in mitochondrial DNA research.

Authors:  Fei Ye; David C Samuels; Travis Clark; Yan Guo
Journal:  Mitochondrion       Date:  2014-05-20       Impact factor: 4.160

4.  MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis.

Authors:  Yan Guo; Jiang Li; Chung-I Li; Yu Shyr; David C Samuels
Journal:  Bioinformatics       Date:  2013-03-06       Impact factor: 6.937

5.  Genome measures used for quality control are dependent on gene function and ancestry.

Authors:  Jing Wang; Leon Raskin; David C Samuels; Yu Shyr; Yan Guo
Journal:  Bioinformatics       Date:  2014-10-08       Impact factor: 6.937

6.  A comprehensive analysis of mitochondrial genes variants and their association with antipsychotic-induced weight gain.

Authors:  Kirti Mittal; Vanessa F Gonçalves; Ricardo Harripaul; Ari B Cuperfain; Brandi Rollins; Arun K Tiwari; Clement C Zai; Malgorzata Maciukiewicz; Daniel J Müller; Marquis P Vawter; James L Kennedy
Journal:  Schizophr Res       Date:  2017-07-08       Impact factor: 4.939

Review 7.  Aging: A mitochondrial DNA perspective, critical analysis and an update.

Authors:  Inna N Shokolenko; Glenn L Wilson; Mikhail F Alexeyev
Journal:  World J Exp Med       Date:  2014-11-20

8.  Very low-level heteroplasmy mtDNA variations are inherited in humans.

Authors:  Yan Guo; Chung-I Li; Quanhu Sheng; Jeanette F Winther; Qiuyin Cai; John D Boice; Yu Shyr
Journal:  J Genet Genomics       Date:  2013-12-08       Impact factor: 4.275

Review 9.  Finding the lost treasures in exome sequencing data.

Authors:  David C Samuels; Leng Han; Jiang Li; Sheng Quanghu; Travis A Clark; Yu Shyr; Yan Guo
Journal:  Trends Genet       Date:  2013-08-22       Impact factor: 11.639

10.  The effect of strand bias in Illumina short-read sequencing data.

Authors:  Yan Guo; Jiang Li; Chung-I Li; Jirong Long; David C Samuels; Yu Shyr
Journal:  BMC Genomics       Date:  2012-11-24       Impact factor: 3.969

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