| Literature DB >> 22384061 |
Julie Henriques1, Mar Pujades-Rodriguez, Megan McGuire, Elisabeth Szumilin, Jean Iwaz, Jean-François Etard, René Ecochard.
Abstract
OBJECTIVE: The evaluation of HIV treatment programs is generally based on an estimation of survival among patients receiving antiretroviral treatment (ART). In large HIV programs, loss to follow-up (LFU) rates remain high despite active patient tracing, which is likely to bias survival estimates and survival regression analyses.Entities:
Mesh:
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Year: 2012 PMID: 22384061 PMCID: PMC3285641 DOI: 10.1371/journal.pone.0031706
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Flow chart of the study cohort.
Methods to correct survival estimates.
| Method | Presentation | |
| 1 | Updated dataset | The information obtained on the subset of LFU patients who were traced and whose vital status was ascertained was used to update the dataset. |
| 2 | Stratified Kaplan-Meier | First, the death rates were calculated separately for non-LFU and for LFU patients who were traced and whose vital status was ascertained. These death rates were then combined to yield a weighted average. The weights used were the proportions of LFU and non-LFU patients at the end of the study. |
| 3 | Nomogram | See reference 12 |
| 4 | Time-dependant stratified Kaplan-Meier | The death rates were first separately calculated for non-LFU and for LFU patients who were traced and whose vital status was ascertained at each event-time. These death rates were then combined to yield a weighted average. The weights used were the proportions of LFU and non-LFU patients at each event-time. |
| 5 | Time- and frailty-dependent stratified Kaplan-Meier | Step 1: A Cox proportional hazards model was used to identify factors predictive of LFU. The linear predictor of this model was calculated. Quintiles of this linear predictor were used to create strata of subject having the same propensity to be lost-to-follow-up. Step 2: Within each stratum, the death rates of non-LFU and traced LFU patients were computed. A global death rate was finally obtained combining all strata estimators. |
| 6 | Regression analysis | Step 1: A weighted logistic regression was applied to a dataset limited to dead patients using both the first-phase and the second-phase sample. This logistic regression predicted the probability of a death to be reported as a function of the covariates. This predicted probability was considered as a sensitivity. Step 2: The follow-up of each patient was split into successive time periods of one month each. Step 3: A Poisson regression model was used to estimate the death rate within each month period, the logarithm of the sensitivity being included in a standard Poisson regression model as an offset. Thus, the number of observed deaths was supposed to follow a Poisson distribution having as mean the product: number of patients at risk×rate of death×sensitivity. NB. The weight used in step 1 was 1 for patients whose death was identified in the first sample. The weight given to patients in the second-phase sample was used to take into account that only a subset of LFU patients were traced and had their vital status ascertained |
| +wt1 | Weight = 1; i.e., ignores that only a subset of LFU patients were traced and had their vital status ascertained. | |
| +wt2 | Weight = the inverse of the proportion of patients traced and who had their vital status ascertained (see method 2) | |
| +wt3 | Weight = the inverse of the proportion of patients traced and who had their vital status ascertained, at each time band (see method 4) | |
Conditions to be fulfilled to obtain unbiased estimates.
| Condition | |||||
| Method | Patients traced and who had their vital status ascertained are representative of LFU patients | The death rate among LFU equals that of non-LFU | No change in the probability of being LFU over time | The probability of LFU does not depend on the covariates | |
| 1 | Updated dataset | ✓ | ✓ | ✓ | ✓ |
| 2 | Stratified Kaplan-Meier | ✓ | ✓ | ✓ | |
| 3 | Nomogram | ✓ | ✓ | ✓ | |
| 4 | Time-dependent stratified Kaplan-Meier | ✓ | ✓ | ||
| 5 | Time and frailty dependent stratified Kaplan-Meier | ✓ | |||
| 6 | Regression analysis | ||||
| +wt1 | ✓ | ✓ | ✓ | ✓ | |
| +wt2 | ✓ | ✓ | ✓ | ||
| +wt3 | ✓ | ✓ | |||
Patient characteristics and mortality among lost to follow-up and non-lost-to-follow-up patients.
| Characteristics | Cohort | Non-LFU | LFU | p-value |
| Number | 6,727 | 6,144 | 583 | |
| Women | 4,372 (65.0%) | 4,055 (66.0%) | 317 (54.4%) | 0.0001 |
| Age at ART start | 35.2 [30.0;43.0] | 35.2 [30.0;43.1] | 34.3 [29.0;42.2] | 0.0138 |
| Tuberculosis at ART start | 349 (5.2%) | 302 (4.9%) | 47 (8.1%) | 0.001 |
| Kaposi sarcoma at ART start | 315 (4.7%) | 244 (4.0%) | 71 (12.2%) | 0.0001 |
| Year of ART initiation | 0.0001 | |||
| 2004–2005 | 2,455 (36.5%) | 2,170 (35.3%) | 285 (48.9%) | |
| 2006–2007 | 4,272 (63.5%) | 3,974 (64.7%) | 298 (51.1%) | |
| First CD4 cell count | 0.0001 | |||
| <150 cells/mm3 | 1,673 (24.9%) | 1,573 (25.6%) | 100 (17.1%) | |
| ≥150 cells/mm3 | 1,598 (23.7%) | 1,530 (24.9%) | 68 (11.7%) | |
| Missing | 3,456 (51.4%) | 3,041 (49.5%) | 415 (71.2%) | |
| Patients with known vital status | 6,346 | 6,144 | 202 | |
| Deaths among patients with known vital status in the first year of ART | 731 (10.9%) | 610 (9.9%) | 120 (20.6%) | 0.0001 |
All values are expressed as number (percentage) but “Age at ART initiation” expressed as Median [Interquartile range].
*Pearson chi-square test was used for binary covariates and Student t-test for continuous covariates.
Figure 2Patient survival in men and women.
The upper and lower packs of line identifiers correspond respectively to the visibly grouped graphs or methods. SKM = stratified Kaplan-Meier method, wt = weight.
Relative mortality estimated with Poisson regression on uncorrected or corrected data.
| Characteristics at ART initiation | Uncorrected | Weight 1 | Weight 2 | Weight 3 |
| Duration of follow-up (months) | 0.80 [0.77–0.82] | 0.85 [0.82–0.87] | 0.87 [0.84–0.90] | 0.86 [0.93–0.89] |
| Sex (women vs. men) | 0.62 [0.53–0.73] | 0.67 [0.57–0.79] | 0.69 [0.58–0.81] | 0.67 [0.57–0.79] |
| CD4 cell count (vs. <150 cells/mm3) | ||||
| ≥150 cells/mm3 | 0.64 [0.48–0.86] | 0.69 [0.51–0.92] | 0.67 [0.51–0.90] | 0.66 [0.49–0.87] |
| Missing | 1.51 [1.23–1.86] | 1.33 [1.07–1.64] | 1.41 [1.14–1.74] | 1.43 [1.16–1.77] |
| Tuberculosis (Yes vs. no) | 1.07 [0.76–1.50] | 2.28 [1.62–3.22] | 2.27 [1.61–3.21] | 2.06 [1.46–2.90] |
| Kaposi sarcoma (Yes vs. no) | 2.11 [1.61–2.76] | 2.96 [2.25–3.89] | 3.09 [2.35–4.06] | 2.64 [2.01–3.48] |
| Year of ART start (2006–07 vs. 2004–05) | 1.40 [1.17–1.66] | 1.34 [1.12–1.60] | 1.33 [1.11–1.59] | 1.29 [1.08–1.54] |
Three different weightings were considered for correction: Weight 1 = 1, Weight 2 = the inverse of the proportion of LFU patients who were traced and had their vital status ascertained, Weight 3 = the inverse of the time-specific proportion of them.
All the values are expressed as mortality ratios [95% confidence interval].