Literature DB >> 22376111

RNA G-quadruplexes: G-quadruplexes with "U" turns.

Tani Agarwal1, Gopal Jayaraj, Satya Prakash Pandey, Prachi Agarwala, Souvik Maiti.   

Abstract

G-quadruplexes are non canonical secondary structures held together by Hoogsteen bonded planar guanine quartets formed in G-rich sequences in DNA and RNA. Considerable research over the past three decades has contributed to a great deal of understanding of these unusual structures in DNA. Various factors governing the stability of DNA quadruplexes coupled with their in vivo existence have been well documented. RNA has emerged as a key regulatory player in the functioning of the cell shifting the focus to RNA G-quadruplexes which were discovered recently. RNA G-quadruplexes demonstrate immense potential for in vivo existence and function due to their inherent chemistry. We have highlighted the major findings of the field and compared them to structural aspects of DNA quadruplexes. Further, the plausible functions of RNA G-quadruplexes such as translational suppression, splicing etc. are discussed in brief, suggesting scope for an extensive role of these structures in biological systems. As the field is growing, we endeavor to review the current knowledge and evaluate the various attributes of RNA G- quadruplex structure, stability, function and applications. We have also attempted to evaluate the physical and physiological role and relevance of these motifs.

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Year:  2012        PMID: 22376111     DOI: 10.2174/138161212799958468

Source DB:  PubMed          Journal:  Curr Pharm Des        ISSN: 1381-6128            Impact factor:   3.116


  7 in total

1.  De novo tertiary structure prediction using RNA123--benchmarking and application to Macugen.

Authors:  Emma S E Eriksson; Lokesh Joshi; Martin Billeter; Leif A Eriksson
Journal:  J Mol Model       Date:  2014-08-10       Impact factor: 1.810

2.  Inhibition of mdr1 by G-quadruplex oligonucleotides and reversal of paclitaxel resistance in human ovarian cancer cells.

Authors:  Biao Wang; Shuo Li; Xin Meng; Hong Shang; Yifu Guan
Journal:  Tumour Biol       Date:  2015-03-24

Review 3.  Action and function of helicases on RNA G-quadruplexes.

Authors:  Marco Caterino; Katrin Paeschke
Journal:  Methods       Date:  2021-09-10       Impact factor: 4.647

Review 4.  Secondary structures in RNA synthesis, splicing and translation.

Authors:  Ilias Georgakopoulos-Soares; Guillermo E Parada; Martin Hemberg
Journal:  Comput Struct Biotechnol J       Date:  2022-05-27       Impact factor: 6.155

5.  Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas.

Authors:  Anton I Petrov; Craig L Zirbel; Neocles B Leontis
Journal:  RNA       Date:  2013-08-22       Impact factor: 4.942

Review 6.  The emerging structural complexity of G-quadruplex RNAs.

Authors:  Michael T Banco; Adrian R Ferré-D'Amaré
Journal:  RNA       Date:  2021-01-22       Impact factor: 4.942

7.  RNA G-quadruplex secondary structure promotes alternative splicing via the RNA-binding protein hnRNPF.

Authors:  Huilin Huang; Jing Zhang; Samuel E Harvey; Xiaohui Hu; Chonghui Cheng
Journal:  Genes Dev       Date:  2017-12-21       Impact factor: 11.361

  7 in total

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