Literature DB >> 22376108

Experimental methods for studying the interactions between G-quadruplex structures and ligands.

Joaquim Jaumot1, Raimundo Gargallo.   

Abstract

The present paper reviews the recent advances in and applications of experimental techniques used to study interactions between G-quadruplex structures and ligands that are potentially of pharmaceutical interest. Several instrumental techniques are used to study such interactions. The application of spectroscopic techniques such as molecular absorption, circular dichroism, molecular fluorescence, mass spectrometry and nuclear magnetic resonance are reviewed and we discuss the type of information (qualitative or quantitative) that can be obtained from the use of each technique. Additionally, the application of complementary techniques such as surface plasmon resonance, isothermal titration calorimetry and different methods based on biochemistry is considered. For each technique, the main applications are presented and they are classified according to the family of the ligand and the type of G-quadruplex forming sequence (human telomeric or promoter region of oncogenes) considered.

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Year:  2012        PMID: 22376108     DOI: 10.2174/138161212799958486

Source DB:  PubMed          Journal:  Curr Pharm Des        ISSN: 1381-6128            Impact factor:   3.116


  15 in total

1.  Structural analysis and biological functionalities of iron(III)- and manganese(III)-thiosemicarbazone complexes: in vitro anti-proliferative activity on human cancer cells, DNA binding and cleavage studies.

Authors:  Büşra Kaya; Zehra Kübra Yılmaz; Onur Şahin; Belma Aslim; Ümmügülsüm Tükenmez; Bahri Ülküseven
Journal:  J Biol Inorg Chem       Date:  2019-03-20       Impact factor: 3.358

2.  Chiral metallohelices enantioselectively target hybrid human telomeric G-quadruplex DNA.

Authors:  Andong Zhao; Suzanne E Howson; Chuanqi Zhao; Jinsong Ren; Peter Scott; Chunyu Wang; Xiaogang Qu
Journal:  Nucleic Acids Res       Date:  2017-05-19       Impact factor: 16.971

Review 3.  Modulation of DNA structure formation using small molecules.

Authors:  Imee M A Del Mundo; Karen M Vasquez; Guliang Wang
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2019-09-03       Impact factor: 4.739

4.  Interaction of indomethacin with calf thymus DNA: a multi-spectroscopic, thermodynamic and molecular modelling approach.

Authors:  Mohammed Amir Husain; Hassan Mubarak Ishqi; Tarique Sarwar; Sayeed Ur Rehman; Mohammad Tabish
Journal:  Medchemcomm       Date:  2017-04-27       Impact factor: 3.597

5.  V-shaped dinuclear Pt(II) complexes: selective interaction with human telomeric G-quadruplex and significant inhibition towards telomerase.

Authors:  Cui-Xia Xu; Yu-Xuan Zheng; Xiao-Hui Zheng; Qian Hu; Yong Zhao; Liang-Nian Ji; Zong-Wan Mao
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

6.  Variable-temperature size exclusion chromatography for the study of the structural changes in g-quadruplex.

Authors:  Sanae Benabou; Ramon Eritja; Raimundo Gargallo
Journal:  ISRN Biochem       Date:  2013-11-10

7.  TWJ-Screen: an isothermal screening assay to assess ligand/DNA junction interactions in vitro.

Authors:  Ludivine Guyon; Marc Pirrotta; Katerina Duskova; Anton Granzhan; Marie-Paule Teulade-Fichou; David Monchaud
Journal:  Nucleic Acids Res       Date:  2018-02-16       Impact factor: 16.971

8.  Practical Microwave Synthesis of Carbazole Aldehydes for the Development of DNA-Binding Ligands.

Authors:  Agata Głuszyńska; Bernard Juskowiak
Journal:  Molecules       Date:  2019-03-09       Impact factor: 4.411

9.  POT1 stability and binding measured by fluorescence thermal shift assays.

Authors:  Lynn W DeLeeuw; Robert C Monsen; Vytautas Petrauskas; Robert D Gray; Lina Baranauskiene; Daumantas Matulis; John O Trent; Jonathan B Chaires
Journal:  PLoS One       Date:  2021-03-30       Impact factor: 3.240

10.  Combining Electrospray Mass Spectrometry (ESI-MS) and Computational Techniques in the Assessment of G-Quadruplex Ligands: A Hybrid Approach to Optimize Hit Discovery.

Authors:  Giovanni Ribaudo; Alberto Ongaro; Erika Oselladore; Maurizio Memo; Alessandra Gianoncelli
Journal:  J Med Chem       Date:  2021-09-12       Impact factor: 7.446

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