Literature DB >> 22374964

Draft genome sequence of Vibrio fischeri SR5, a strain isolated from the light organ of the Mediterranean squid Sepiola robusta.

Mattias C Gyllborg1, Jason W Sahl, David C Cronin, David A Rasko, Mark J Mandel.   

Abstract

Here, we describe the draft genome sequence of Vibrio fischeri SR5, a squid symbiotic isolate from Sepiola robusta in the Mediterranean Sea. This 4.3-Mbp genome sequence represents the first V. fischeri genome from an S. robusta symbiont and the first from outside the Pacific Ocean.

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Year:  2012        PMID： 22374964      PMCID： PMC3294840          DOI： 10.1128/JB.06825-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

Review 1.  Models and approaches to dissect host-symbiont specificity.

Authors:  Mark J Mandel
Journal:  Trends Microbiol       Date:  2010-08-21       Impact factor: 17.079

Review 2.  A squid that glows in the night: development of an animal-bacterial mutualism.

Authors:  E G Ruby; M J McFall-Ngai
Journal:  J Bacteriol       Date:  1992-08       Impact factor: 3.490

Review 3.  Vibrio fischeri and its host: it takes two to tango.

Authors:  Karen L Visick; Edward G Ruby
Journal:  Curr Opin Microbiol       Date:  2006-10-16       Impact factor: 7.934

4.  Two-component sensor required for normal symbiotic colonization of euprymna scolopes by Vibrio fischeri.

Authors:  K L Visick; L M Skoufos
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

5.  The symbiosis regulator rscS controls the syp gene locus, biofilm formation and symbiotic aggregation by Vibrio fischeri.

Authors:  Emily S Yip; Kati Geszvain; Cindy R DeLoney-Marino; Karen L Visick
Journal:  Mol Microbiol       Date:  2006-12       Impact factor: 3.501

6.  A new niche for Vibrio logei, the predominant light organ symbiont of squids in the genus Sepiola.

Authors:  P M Fidopiastis; S von Boletzky; E G Ruby
Journal:  J Bacteriol       Date:  1998-01       Impact factor: 3.490

7.  progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement.

Authors:  Aaron E Darling; Bob Mau; Nicole T Perna
Journal:  PLoS One       Date:  2010-06-25       Impact factor: 3.240

8.  A single regulatory gene is sufficient to alter bacterial host range.

Authors:  Mark J Mandel; Michael S Wollenberg; Eric V Stabb; Karen L Visick; Edward G Ruby
Journal:  Nature       Date:  2009-02-01       Impact factor: 49.962

9.  Reordering contigs of draft genomes using the Mauve aligner.

Authors:  Anna I Rissman; Bob Mau; Bryan S Biehl; Aaron E Darling; Jeremy D Glasner; Nicole T Perna
Journal:  Bioinformatics       Date:  2009-06-10       Impact factor: 6.937
  9 in total
  10 in total

1.  TfoX-based genetic mapping identifies Vibrio fischeri strain-level differences and reveals a common lineage of laboratory strains.

Authors:  John F Brooks; Mattias C Gyllborg; Acadia A Kocher; Laura E H Markey; Mark J Mandel
Journal:  J Bacteriol       Date:  2015-01-05       Impact factor: 3.490

2.  CysK Plays a Role in Biofilm Formation and Colonization by Vibrio fischeri.

Authors:  Priyanka Singh; John F Brooks; Valerie A Ray; Mark J Mandel; Karen L Visick
Journal:  Appl Environ Microbiol       Date:  2015-05-29       Impact factor: 4.792

Review 3.  Acquisition of bioluminescent trait by non-luminous organisms from luminous organisms through various origins.

Authors:  Chatragadda Ramesh; Manabu Bessho-Uehara
Journal:  Photochem Photobiol Sci       Date:  2021-10-29       Impact factor: 3.982

4.  LuxU connects quorum sensing to biofilm formation in Vibrio fischeri.

Authors:  Valerie A Ray; Karen L Visick
Journal:  Mol Microbiol       Date:  2012-10-05       Impact factor: 3.501

5.  Tools for Rapid Genetic Engineering of Vibrio fischeri.

Authors:  Karen L Visick; Kelsey M Hodge-Hanson; Alice H Tischler; Allison K Bennett; Vincent Mastrodomenico
Journal:  Appl Environ Microbiol       Date:  2018-07-02       Impact factor: 4.792

Review 6.  A lasting symbiosis: how Vibrio fischeri finds a squid partner and persists within its natural host.

Authors:  Karen L Visick; Eric V Stabb; Edward G Ruby
Journal:  Nat Rev Microbiol       Date:  2021-06-04       Impact factor: 60.633

7.  Draft Genome Sequence of Aliivibrio fischeri Strain 5LC, a Bacterium Retrieved from Gilthead Sea Bream (Sparus aurata) Larvae Reared in Aquaculture.

Authors:  Gianmaria Califano; Telma Franco; Ana C S Gonçalves; Sara Castanho; Florbela Soares; Laura Ribeiro; Leonardo Mata; Rodrigo Costa
Journal:  Genome Announc       Date:  2015-06-04

8.  Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment.

Authors:  Lydia J Baker; Lindsay L Freed; Cole G Easson; Jose V Lopez; Danté Fenolio; Tracey T Sutton; Spencer V Nyholm; Tory A Hendry
Journal:  Elife       Date:  2019-10-01       Impact factor: 8.140

9.  Using Colonization Assays and Comparative Genomics To Discover Symbiosis Behaviors and Factors in Vibrio fischeri.

Authors:  Clotilde Bongrand; Silvia Moriano-Gutierrez; Philip Arevalo; Margaret McFall-Ngai; Karen L Visick; Martin Polz; Edward G Ruby
Journal:  mBio       Date:  2020-03-03       Impact factor: 7.867

10.  The Histidine Kinase BinK Is a Negative Regulator of Biofilm Formation and Squid Colonization.

Authors:  John F Brooks; Mark J Mandel
Journal:  J Bacteriol       Date:  2016-09-09       Impact factor: 3.490
  10 in total

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