Literature DB >> 22373909

Modeling cellular signaling: taking space into the computation.

Michael W Sneddon1, Thierry Emonet.   

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Year:  2012        PMID： 22373909      PMCID： PMC4713026          DOI： 10.1038/nmeth.1900

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  11 in total

1.  CompuCell, a multi-model framework for simulation of morphogenesis.

Authors:  J A Izaguirre; R Chaturvedi; C Huang; T Cickovski; J Coffland; G Thomas; G Forgacs; M Alber; G Hentschel; S A Newman; J A Glazier
Journal:  Bioinformatics       Date:  2004-02-05       Impact factor: 6.937

2.  Efficient modeling, simulation and coarse-graining of biological complexity with NFsim.

Authors:  Michael W Sneddon; James R Faeder; Thierry Emonet
Journal:  Nat Methods       Date:  2010-12-26       Impact factor: 28.547

3.  Rule-based modeling of biochemical systems with BioNetGen.

Authors:  James R Faeder; Michael L Blinov; William S Hlavacek
Journal:  Methods Mol Biol       Date:  2009

4.  Simulation of the differential adhesion driven rearrangement of biological cells.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1993-03

5.  Spatio-temporal correlations can drastically change the response of a MAPK pathway.

Authors:  Koichi Takahashi; Sorin Tanase-Nicola; Pieter Rein ten Wolde
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-25       Impact factor: 11.205

Review 6.  Modeling cellular processes in 3D.

Authors:  Alex Mogilner; David Odde
Journal:  Trends Cell Biol       Date:  2011-10-27       Impact factor: 20.808

7.  Detailed simulations of cell biology with Smoldyn 2.1.

Authors:  Steven S Andrews; Nathan J Addy; Roger Brent; Adam P Arkin
Journal:  PLoS Comput Biol       Date:  2010-03-12       Impact factor: 4.475

8.  Virtual Cell modelling and simulation software environment.

Authors:  I I Moraru; J C Schaff; B M Slepchenko; M L Blinov; F Morgan; A Lakshminarayana; F Gao; Y Li; L M Loew
Journal:  IET Syst Biol       Date:  2008-09       Impact factor: 1.615

9.  Computational modeling of cellular signaling processes embedded into dynamic spatial contexts.

Authors:  Bastian R Angermann; Frederick Klauschen; Alex D Garcia; Thorsten Prustel; Fengkai Zhang; Ronald N Germain; Martin Meier-Schellersheim
Journal:  Nat Methods       Date:  2012-01-29       Impact factor: 28.547

10.  Key role of local regulation in chemosensing revealed by a new molecular interaction-based modeling method.

Authors:  Martin Meier-Schellersheim; Xuehua Xu; Bastian Angermann; Eric J Kunkel; Tian Jin; Ronald N Germain
Journal:  PLoS Comput Biol       Date:  2006-05-25       Impact factor: 4.475
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  3 in total

1.  Very 'sticky' proteins - not too sticky after all?

Authors:  Stephan M Feller; Marc Lewitzky
Journal:  Cell Commun Signal       Date:  2012-06-14       Impact factor: 5.712

2.  Personalized prediction of EGFR mutation-induced drug resistance in lung cancer.

Authors:  Debby D Wang; Weiqiang Zhou; Hong Yan; Maria Wong; Victor Lee
Journal:  Sci Rep       Date:  2013-10-04       Impact factor: 4.379

3.  Membrane related dynamics and the formation of actin in cells growing on micro-topographies: a spatial computational model.

Authors:  Arne T Bittig; Claudia Matschegewski; J Barbara Nebe; Susanne Stählke; Adelinde M Uhrmacher
Journal:  BMC Syst Biol       Date:  2014-09-09
  3 in total

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