Literature DB >> 22373257

Data hosting infrastructure for primary biodiversity data.

Anthony Goddard1, Nathan Wilson, Phil Cryer, Grant Yamashita.   

Abstract

BACKGROUND: Today, an unprecedented volume of primary biodiversity data are being generated worldwide, yet significant amounts of these data have been and will continue to be lost after the conclusion of the projects tasked with collecting them. To get the most value out of these data it is imperative to seek a solution whereby these data are rescued, archived and made available to the biodiversity community. To this end, the biodiversity informatics community requires investment in processes and infrastructure to mitigate data loss and provide solutions for long-term hosting and sharing of biodiversity data. DISCUSSION: We review the current state of biodiversity data hosting and investigate the technological and sociological barriers to proper data management. We further explore the rescuing and re-hosting of legacy data, the state of existing toolsets and propose a future direction for the development of new discovery tools. We also explore the role of data standards and licensing in the context of data hosting and preservation. We provide five recommendations for the biodiversity community that will foster better data preservation and access: (1) encourage the community's use of data standards, (2) promote the public domain licensing of data, (3) establish a community of those involved in data hosting and archival, (4) establish hosting centers for biodiversity data, and (5) develop tools for data discovery.
CONCLUSION: The community's adoption of standards and development of tools to enable data discovery is essential to sustainable data preservation. Furthermore, the increased adoption of open content licensing, the establishment of data hosting infrastructure and the creation of a data hosting and archiving community are all necessary steps towards the community ensuring that data archival policies become standardized.

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Mesh:

Year:  2011        PMID: 22373257      PMCID: PMC3287448          DOI: 10.1186/1471-2105-12-S15-S5

Source DB:  PubMed          Journal:  BMC Bioinformatics        ISSN: 1471-2105            Impact factor:   3.169


  8 in total

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3.  Ecology. Toward a global biodiversity observing system.

Authors:  R J Scholes; G M Mace; W Turner; G N Geller; N Jurgens; A Larigauderie; D Muchoney; B A Walther; H A Mooney
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4.  Inspiring vanguards: the Woods Hole experience.

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Journal:  Med Ref Serv Q       Date:  2008

5.  Data archiving.

Authors:  Michael C Whitlock; Mark A McPeek; Mark D Rausher; Loren Rieseberg; Allen J Moore
Journal:  Am Nat       Date:  2010-02       Impact factor: 3.926

6.  BioTorrents: a file sharing service for scientific data.

Authors:  Morgan G I Langille; Jonathan A Eisen
Journal:  PLoS One       Date:  2010-04-14       Impact factor: 3.240

7.  Data publication: towards a database of everything.

Authors:  Vincent S Smith
Journal:  BMC Res Notes       Date:  2009-06-24

8.  Global coordination and standardisation in marine biodiversity through the World Register of Marine Species (WoRMS) and related databases.

Authors:  Mark J Costello; Philippe Bouchet; Geoff Boxshall; Kristian Fauchald; Dennis Gordon; Bert W Hoeksema; Gary C B Poore; Rob W M van Soest; Sabine Stöhr; T Chad Walter; Bart Vanhoorne; Wim Decock; Ward Appeltans
Journal:  PLoS One       Date:  2013-01-09       Impact factor: 3.240

  8 in total
  3 in total

1.  A framework for publishing primary biodiversity data.

Authors:  Dave Roberts; Tom Moritz
Journal:  BMC Bioinformatics       Date:  2011-12-15       Impact factor: 3.169

2.  Towards mainstreaming of biodiversity data publishing: recommendations of the GBIF Data Publishing Framework Task Group.

Authors:  Tom Moritz; S Krishnan; Dave Roberts; Peter Ingwersen; Donat Agosti; Lyubomir Penev; Matthew Cockerill; Vishwas Chavan
Journal:  BMC Bioinformatics       Date:  2011-12-15       Impact factor: 3.169

3.  The Encyclopedia of Life v2: Providing Global Access to Knowledge About Life on Earth.

Authors:  Cynthia S Parr; Nathan Wilson; Patrick Leary; Katja S Schulz; Kristen Lans; Lisa Walley; Jennifer A Hammock; Anthony Goddard; Jeremy Rice; Marie Studer; Jeffrey T G Holmes; Robert J Corrigan
Journal:  Biodivers Data J       Date:  2014-04-29
  3 in total

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