Literature DB >> 22367864

Using and understanding RepeatMasker.

Sébastien Tempel1.   

Abstract

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low-complexity DNA sequences. In this chapter, we present the procedure to routinely use this program on a personal computer.

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Year:  2012        PMID： 22367864     DOI： 10.1007/978-1-61779-603-6_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  96 in total

1.  Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.

Authors:  Yong H Woo; Hifzur Ansari; Thomas D Otto; Christen M Klinger; Martin Kolisko; Jan Michálek; Alka Saxena; Dhanasekaran Shanmugam; Annageldi Tayyrov; Alaguraj Veluchamy; Shahjahan Ali; Axel Bernal; Javier del Campo; Jaromír Cihlář; Pavel Flegontov; Sebastian G Gornik; Eva Hajdušková; Aleš Horák; Jan Janouškovec; Nicholas J Katris; Fred D Mast; Diego Miranda-Saavedra; Tobias Mourier; Raeece Naeem; Mridul Nair; Aswini K Panigrahi; Neil D Rawlings; Eriko Padron-Regalado; Abhinay Ramaprasad; Nadira Samad; Aleš Tomčala; Jon Wilkes; Daniel E Neafsey; Christian Doerig; Chris Bowler; Patrick J Keeling; David S Roos; Joel B Dacks; Thomas J Templeton; Ross F Waller; Julius Lukeš; Miroslav Oborník; Arnab Pain
Journal:  Elife       Date:  2015-07-15       Impact factor: 8.140

2.  Identification of 4438 novel lincRNAs involved in mouse pre-implantation embryonic development.

Authors:  Jie Lv; Hui Liu; Shihuan Yu; Hongbo Liu; Wei Cui; Yang Gao; Tao Zheng; Geng Qin; Jing Guo; Tiebo Zeng; Zhengbin Han; Yan Zhang; Qiong Wu
Journal:  Mol Genet Genomics       Date:  2014-11-27       Impact factor: 3.291

3.  A Comprehensive Map of Intron Branchpoints and Lariat RNAs in Plants.

Authors:  Xiaotuo Zhang; Yong Zhang; Taiyun Wang; Ziwei Li; Jinping Cheng; Haoran Ge; Qi Tang; Kun Chen; Li Liu; Chenyu Lu; Junqiang Guo; Binglian Zheng; Yun Zheng
Journal:  Plant Cell       Date:  2019-03-20       Impact factor: 11.277

4.  Identification and characterization of long intergenic non-coding RNAs related to mouse liver development.

Authors:  Jie Lv; Zhijun Huang; Hui Liu; Hongbo Liu; Wei Cui; Bao Li; Hongjuan He; Jing Guo; Qi Liu; Yan Zhang; Qiong Wu
Journal:  Mol Genet Genomics       Date:  2014-07-11       Impact factor: 3.291

5.  OMIGA: Optimized Maker-Based Insect Genome Annotation.

Authors:  Jinding Liu; Huamei Xiao; Shuiqing Huang; Fei Li
Journal:  Mol Genet Genomics       Date:  2014-03-09       Impact factor: 3.291

6.  Population-wide sampling of retrotransposon insertion polymorphisms using deep sequencing and efficient detection.

Authors:  Qichao Yu; Wei Zhang; Xiaolong Zhang; Yongli Zeng; Yeming Wang; Yanhui Wang; Liqin Xu; Xiaoyun Huang; Nannan Li; Xinlan Zhou; Jie Lu; Xiaosen Guo; Guibo Li; Yong Hou; Shiping Liu; Bo Li
Journal:  Gigascience       Date:  2017-09-01       Impact factor: 6.524

7.  Topical silver diamine fluoride for dental caries arrest in preschool children: A randomized controlled trial and microbiological analysis of caries associated microbes and resistance gene expression.

Authors:  Peter Milgrom; Jeremy A Horst; Sharity Ludwig; Marilynn Rothen; Benjamin W Chaffee; Svetlana Lyalina; Katherine S Pollard; Joseph L DeRisi; Lloyd Mancl
Journal:  J Dent       Date:  2017-09-01       Impact factor: 4.379

8.  De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes.

Authors:  Hélène Hinaux; Julie Poulain; Corinne Da Silva; Céline Noirot; William R Jeffery; Didier Casane; Sylvie Rétaux
Journal:  PLoS One       Date:  2013-01-09       Impact factor: 3.240

9.  Subtelomeric p53 binding prevents accumulation of DNA damage at human telomeres.

Authors:  Stephen Tutton; Greggory A Azzam; Nicholas Stong; Olga Vladimirova; Andreas Wiedmer; Jessica A Monteith; Kate Beishline; Zhuo Wang; Zhong Deng; Harold Riethman; Steven B McMahon; Maureen Murphy; Paul M Lieberman
Journal:  EMBO J       Date:  2015-12-12       Impact factor: 11.598

10.  REViewer: a tool for linear visualization of repetitive elements within a sequence query.

Authors:  Ri-Na You; Woo-Chan Kim; Kang-Hoon Lee; Young-Kwan Lee; Kyung-Seop Shin; Kiho Cho; Dong-Ho Cho
Journal:  Genomics       Date:  2013-07-24       Impact factor: 5.736
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