Literature DB >> 22365932

Thermodynamic characterization of viral procapsid expansion into a functional capsid shell.

Elizabeth Medina1, Eri Nakatani, Shannon Kruse, Carlos Enrique Catalano.   

Abstract

The assembly of "complex" DNA viruses such as the herpesviruses and many tailed bacteriophages includes a DNA packaging step where the viral genome is inserted into a preformed procapsid shell. Packaging triggers a remarkable capsid expansion transition that results in thinning of the shell and an increase in capsid volume to accept the full-length genome. This transition is considered irreversible; however, here we demonstrate that the phage λ procapsid can be expanded with urea in vitro and that the transition is fully reversible. This provides an unprecedented opportunity to evaluate the thermodynamic features of this fascinating and essential step in virus assembly. We show that urea-triggered expansion is highly cooperative and strongly temperature dependent. Thermodynamic analysis indicates that the free energy of expansion is influenced by magnesium concentration (3-13 kcal/mol in the presence of 0.2-10 mM Mg(2+)) and that significant hydrophobic surface area is exposed in the expanded shell. Conversely, Mg(2+) drives the expanded shell back to the procapsid conformation in a highly cooperative transition that is also temperature dependent and strongly influenced by urea. We demonstrate that the gpD decoration protein adds to the urea-expanded capsid, presumably at hydrophobic patches exposed at the 3-fold axes of the expanded capsid lattice. The decorated capsid is biologically active and sponsors packaging of the viral genome in vitro. The roles of divalent metal and hydrophobic interactions in controlling packaging-triggered expansion of the procapsid shell are discussed in relation to a general mechanism for DNA-triggered procapsid expansion in the complex double-stranded DNA viruses.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22365932     DOI: 10.1016/j.jmb.2012.02.020

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  10 in total

1.  Exploring the Balance between DNA Pressure and Capsid Stability in Herpesviruses and Phages.

Authors:  D W Bauer; D Li; J Huffman; F L Homa; K Wilson; J C Leavitt; S R Casjens; J Baines; A Evilevitch
Journal:  J Virol       Date:  2015-07-01       Impact factor: 5.103

2.  A Designer Nanoparticle Platform for Controlled Intracellular Delivery of Bioactive Macromolecules: Inhibition of Ubiquitin-Specific Protease 7 in Breast Cancer Cells.

Authors:  Wynton D McClary; Alexis Catala; Wei Zhang; Fabia Gamboni; Monika Dzieciatkowska; Sachdev S Sidhu; Angelo D'Alessandro; Carlos E Catalano
Journal:  ACS Chem Biol       Date:  2022-07-07       Impact factor: 4.634

3.  Rescue of maturation off-pathway products in the assembly of Pseudomonas phage φ 6.

Authors:  Xiaoyu Sun; Markus J Pirttimaa; Dennis H Bamford; Minna M Poranen
Journal:  J Virol       Date:  2013-10-02       Impact factor: 5.103

4.  The enzymology of a viral genome packaging motor is influenced by the assembly state of the motor subunits.

Authors:  Benjamin T Andrews; Carlos Enrique Catalano
Journal:  Biochemistry       Date:  2012-11-07       Impact factor: 3.162

5.  ATP serves as a nucleotide switch coupling the genome maturation and packaging motor complexes of a virus assembly machine.

Authors:  Qin Yang; Carlos E Catalano
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

6.  Role of HSV-1 Capsid Vertex-Specific Component (CVSC) and Viral Terminal DNA in Capsid Docking at the Nuclear Pore.

Authors:  José Ramon Villanueva-Valencia; Efthymios Tsimtsirakis; Alex Evilevitch
Journal:  Viruses       Date:  2021-12-15       Impact factor: 5.048

7.  Intranuclear HSV-1 DNA ejection induces major mechanical transformations suggesting mechanoprotection of nucleus integrity.

Authors:  Alex Evilevitch; Sophia V Hohlbauch
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-01       Impact factor: 11.205

8.  Mechanical Capsid Maturation Facilitates the Resolution of Conflicting Requirements for Herpesvirus Assembly.

Authors:  Alex Evilevitch; Udom Sae-Ueng
Journal:  J Virol       Date:  2021-12-08       Impact factor: 5.103

9.  UL25 Capsid Binding Facilitates Mechanical Maturation of the Herpesvirus Capsid and Allows Retention of Pressurized DNA.

Authors:  Krista G Freeman; Jamie B Huffman; Fred L Homa; Alex Evilevitch
Journal:  J Virol       Date:  2021-08-04       Impact factor: 5.103

10.  Major capsid reinforcement by a minor protein in herpesviruses and phage.

Authors:  Udom Sae-Ueng; Ting Liu; Carlos Enrique Catalano; Jamie B Huffman; Fred L Homa; Alex Evilevitch
Journal:  Nucleic Acids Res       Date:  2014-07-22       Impact factor: 16.971

  10 in total

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