Literature DB >> 22360342

NanoSIMS study of organic matter associated with soil aggregates: advantages, limitations, and combination with STXM.

Laurent Remusat1, Pierre-Joseph Hatton, Peter S Nico, Bernd Zeller, Markus Kleber, Delphine Derrien.   

Abstract

Direct observations of processes occurring at the mineral-organic interface are increasingly seen as relevant for the cycling of both natural soil organic matter and organic contaminants in soils and sediments. Advanced analytical tools with the capability to visualize and characterize organic matter at the submicrometer scale, such as Nano Secondary Ion Mass Spectrometry (NanoSIMS) and Scanning Transmission X-ray Microscopy (STXM) coupled to Near Edge X-ray Absorption Fine Structure Spectroscopy (NEXAFS), may be combined to locate and characterize mineral-associated organic matter. Taking advantage of samples collected from a decadal (15)N litter labeling experiment in a temperate forest, we demonstrate the potential of NanoSIMS to image intact soil particles and to detect spots of isotopic enrichment even at low levels of (15)N application. We show how microsites of isotopic enrichment detected by NanoSIMS can be speciated by STXM-NEXAFS performed on the same particle. Finally, by showing how (15)N enrichment at one microsite could be linked to the presence of microbial metabolites, we emphasize the potential of this combined imaging and spectroscopic approach to link microenvironment with geochemical process and/or location with ecological function.

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Year:  2012        PMID: 22360342     DOI: 10.1021/es203745k

Source DB:  PubMed          Journal:  Environ Sci Technol        ISSN: 0013-936X            Impact factor:   9.028


  10 in total

Review 1.  Soil Aggregate Microbial Communities: Towards Understanding Microbiome Interactions at Biologically Relevant Scales.

Authors:  Regina L Wilpiszeski; Jayde A Aufrecht; Scott T Retterer; Matthew B Sullivan; David E Graham; Eric M Pierce; Olivier D Zablocki; Anthony V Palumbo; Dwayne A Elias
Journal:  Appl Environ Microbiol       Date:  2019-07-01       Impact factor: 4.792

Review 2.  Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain.

Authors:  Philippe C Baveye; Wilfred Otten; Alexandra Kravchenko; María Balseiro-Romero; Éléonore Beckers; Maha Chalhoub; Christophe Darnault; Thilo Eickhorst; Patricia Garnier; Simona Hapca; Serkan Kiranyaz; Olivier Monga; Carsten W Mueller; Naoise Nunan; Valérie Pot; Steffen Schlüter; Hannes Schmidt; Hans-Jörg Vogel
Journal:  Front Microbiol       Date:  2018-08-27       Impact factor: 5.640

3.  NanoSIP: NanoSIMS Applications for Microbial Biology.

Authors:  Jennifer Pett-Ridge; Peter K Weber
Journal:  Methods Mol Biol       Date:  2022

Review 4.  Characterizing Natural Organic Matter Transformations by Microbial Communities in Terrestrial Subsurface Ecosystems: A Critical Review of Analytical Techniques and Challenges.

Authors:  Kristine Grace M Cabugao; Sara Gushgari-Doyle; Stephany S Chacon; Xiaoqin Wu; Amrita Bhattacharyya; Nicholas Bouskill; Romy Chakraborty
Journal:  Front Microbiol       Date:  2022-05-04       Impact factor: 6.064

5.  Submicron structures provide preferential spots for carbon and nitrogen sequestration in soils.

Authors:  Cordula Vogel; Carsten W Mueller; Carmen Höschen; Franz Buegger; Katja Heister; Stefanie Schulz; Michael Schloter; Ingrid Kögel-Knabner
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

6.  Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges.

Authors:  Martin J Blaser; Zoe G Cardon; Mildred K Cho; Jeffrey L Dangl; Timothy J Donohue; Jessica L Green; Rob Knight; Mary E Maxon; Trent R Northen; Katherine S Pollard; Eoin L Brodie
Journal:  mBio       Date:  2016-05-13       Impact factor: 7.867

7.  Denitrifying pathways dominate nitrous oxide emissions from managed grassland during drought and rewetting.

Authors:  E Harris; E Diaz-Pines; E Stoll; M Schloter; S Schulz; C Duffner; K Li; K L Moore; J Ingrisch; D Reinthaler; S Zechmeister-Boltenstern; S Glatzel; N Brüggemann; M Bahn
Journal:  Sci Adv       Date:  2021-02-05       Impact factor: 14.136

8.  Fe biomineralization mirrors individual metabolic activity in a nitrate-dependent Fe(II)-oxidizer.

Authors:  Jennyfer Miot; Laurent Remusat; Elodie Duprat; Adriana Gonzalez; Sylvain Pont; Mélanie Poinsot
Journal:  Front Microbiol       Date:  2015-09-08       Impact factor: 5.640

9.  Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils.

Authors:  Stephanie A Eichorst; Florian Strasser; Tanja Woyke; Arno Schintlmeister; Michael Wagner; Dagmar Woebken
Journal:  FEMS Microbiol Ecol       Date:  2015-08-30       Impact factor: 4.194

10.  Nitrogen fertilization modifies organic transformations and coatings on soil biogeochemical interfaces through microbial polysaccharides synthesis.

Authors:  Xizhi Huang; Georg Guggenberger; Yakov Kuzyakov; Olga Shibistova; Tida Ge; Yiwei Li; Bifeng Liu; Jinshui Wu
Journal:  Sci Rep       Date:  2019-12-10       Impact factor: 4.379

  10 in total

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