Literature DB >> 22354722

Probing the structure of lysozyme-carbon-nanotube hybrids with molecular dynamics.

Matteo Calvaresi1, Siegfried Hoefinger, Francesco Zerbetto.   

Abstract

Lysozyme has been successfully used to solvate carbon nanotubes (CNT). Extensive molecular dynamics simulations show that 1) a favorite site of adsorption exists, 2) the protein-tube interaction region is located far from the active site, 3) two protein helices act as a tweezer that grips the nanotube, 4) a localized protein re-arrangement hides the tube from the solvent, and 5) aminic and amidic moieties of lysozyme behave similarly to surfactants in the solvation of the tube.
Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2012        PMID: 22354722     DOI: 10.1002/chem.201102703

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  12 in total

1.  Poly (n-butyl cyanoacrylate) as a nanocarrier for rivastigmine transport across the blood-brain barrier in Alzheimer's disease treatment: a perspective from molecular dynamics simulations.

Authors:  Seyed Vahid Mousavi; Seyed Majid Hashemianzadeh
Journal:  J Mol Model       Date:  2018-08-25       Impact factor: 1.810

2.  Biological relevance of oxidative debris present in as-prepared graphene oxide.

Authors:  Ajith Pattammattel; Christina L Williams; Paritosh Pande; William G Tsui; Ashis K Basu; Challa Vijaya Kumar
Journal:  RSC Adv       Date:  2015-01-01       Impact factor: 3.361

3.  Lysozyme orientation and conformation on MoS2 surface: Insights from molecular simulations.

Authors:  Hongjie Fan; Daohui Zhao; Yingtu Li; Jian Zhou
Journal:  Biointerphases       Date:  2017-06-02       Impact factor: 2.456

4.  Probing immobilization mechanism of alpha-chymotrypsin onto carbon nanotube in organic media by molecular dynamics simulation.

Authors:  Liyun Zhang; Xiuchan Xiao; Yuan Yuan; Yanzhi Guo; Menglong Li; Xuemei Pu
Journal:  Sci Rep       Date:  2015-03-19       Impact factor: 4.379

5.  Molecular mechanism of carbon nanotube to activate Subtilisin Carlsberg in polar and non-polar organic media.

Authors:  Liyun Zhang; Yuzhi Li; Yuan Yuan; Yuanyuan Jiang; Yanzhi Guo; Menglong Li; Xuemei Pu
Journal:  Sci Rep       Date:  2016-11-22       Impact factor: 4.379

6.  The potential impact of carboxylic-functionalized multi-walled carbon nanotubes on trypsin: A Comprehensive spectroscopic and molecular dynamics simulation study.

Authors:  Maryam Noordadi; Faramarz Mehrnejad; Reza H Sajedi; Majid Jafari; Bijan Ranjbar
Journal:  PLoS One       Date:  2018-06-01       Impact factor: 3.240

7.  C60 Bioconjugation with Proteins: Towards a Palette of Carriers for All pH Ranges.

Authors:  Matteo Di Giosia; Francesco Valle; Andrea Cantelli; Andrea Bottoni; Francesco Zerbetto; Matteo Calvaresi
Journal:  Materials (Basel)       Date:  2018-04-27       Impact factor: 3.623

8.  An investigation into non-covalent functionalization of a single-walled carbon nanotube and a graphene sheet with protein G:A combined experimental and molecular dynamics study.

Authors:  Mohammad-Bagher Ebrahim-Habibi; Maryam Ghobeh; Farzaneh Aghakhani Mahyari; Hashem Rafii-Tabar; Pezhman Sasanpour
Journal:  Sci Rep       Date:  2019-02-04       Impact factor: 4.379

9.  Shining Light on Molecular Mechanism for Odor-selectivity of CNT-immobilized Olfactory Receptor.

Authors:  Liyun Zhang; Yuan Yuan; Tian Ren; Yanzhi Guo; Chuan Li; Xuemei Pu
Journal:  Sci Rep       Date:  2018-05-18       Impact factor: 4.379

10.  Comparison of Attachment and Antibacterial Activity of Covalent and Noncovalent Lysozyme-Functionalized Single-Walled Carbon Nanotubes.

Authors:  Matthew M Noor; Joyanta Goswami; Virginia A Davis
Journal:  ACS Omega       Date:  2020-01-27
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