Literature DB >> 22354275

Transportation behavior of alkali ions through a cell membrane ion channel. A quantum chemical description of a simplified isolated model.

Ferenc Billes1, Ildikó Mohammed-Ziegler, Hans Mikosch.   

Abstract

Quantum chemical model calculations were carried out for modeling the ion transport through an isolated ion channel of a cell membrane. An isolated part of a natural ion channel was modeled. The model channel was a calixarene derivative, hydrated sodium and potassium ions were the models of the transported ion. The electrostatic potential of the channel and the energy of the channel-ion system were calculated as a function of the alkali ion position. Both attractive and repulsive ion-channel interactions were found. The calculations - namely the dependence of the system energy and the atomic charges of the water molecules with respect to the position of the alkali ion in the channel - revealed the molecular-structural background of the potassium selectivity of this artificial ion channel. It was concluded that the studied ion channel mimics real biological ion channel quite well.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22354275     DOI: 10.1007/s00894-012-1364-9

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  13 in total

1.  A dendritic cable model for the amplification of synaptic potentials by an ensemble average of persistent sodium channels.

Authors:  R R Poznanski; J Bell
Journal:  Math Biosci       Date:  2000-08       Impact factor: 2.144

Review 2.  Simulation approaches to ion channel structure-function relationships.

Authors:  D P Tieleman; P C Biggin; G R Smith; M S Sansom
Journal:  Q Rev Biophys       Date:  2001-11       Impact factor: 5.318

3.  Correlation studies of open and closed state fluctuations in an ion channel: Analysis of ion current through a large-conductance locust potassium channel.

Authors:  Zuzanna Siwy; Marcel Ausloos; Kristinka Ivanova
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-02-27

4.  A synthetic ion channel derived from a metallogallarene capsule that functions in phospholipid bilayers.

Authors:  Oleg V Kulikov; Ruiqiong Li; George W Gokel
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

5.  On a novel rate theory for transport in narrow ion channels and its application to the study of flux optimization via geometric effects.

Authors:  E Abad; J Reingruber; M S P Sansom
Journal:  J Chem Phys       Date:  2009-02-28       Impact factor: 3.488

6.  Potassium permeation through the KcsA channel: a density functional study.

Authors:  Leonardo Guidoni; Paolo Carloni
Journal:  Biochim Biophys Acta       Date:  2002-06-13

7.  Band intensity in the IR spectra and conformations of calix[4]arene and thiacalix[4]arene.

Authors:  V L Furer; E I Borisoglebskaya; V I Kovalenko
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2005-01-01       Impact factor: 4.098

Review 8.  Computer simulations of membrane proteins.

Authors:  Walter L Ash; Marian R Zlomislic; Eliud O Oloo; D Peter Tieleman
Journal:  Biochim Biophys Acta       Date:  2004-11-03

9.  Tetracyanoresorcin[4]arene ion channel shows pH dependent conductivity change.

Authors:  Wen-Hua Chen; Masanori Nishikawa; Song-De Tan; Mika Yamamura; Akiharu Satake; Yoshiaki Kobuke
Journal:  Chem Commun (Camb)       Date:  2004-03-03       Impact factor: 6.222

Review 10.  Computational studies of the gramicidin channel.

Authors:  Benoît Roux
Journal:  Acc Chem Res       Date:  2002-06       Impact factor: 22.384

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.