Literature DB >> 22349176

MiRANN: a reliable approach for improved classification of precursor microRNA using Artificial Neural Network model.

Md Eamin Rahman1, Rashedul Islam, Shahidul Islam, Shakhinur Islam Mondal, Md Ruhul Amin.   

Abstract

MicroRNA (miRNA) is a special class of short noncoding RNA that serves pivotal function of regulating gene expression. The computational prediction of new miRNA candidates involves various methods such as learning methods and methods using expression data. This article has proposed a reliable model - miRANN which is a supervised machine learning approach. MiRANN used known pre-miRNAs as positive set and a novel negative set from human CDS regions. The number of known miRNAs is now huge and diversified that could cover almost all characteristics of unknown miRNAs which increases the quality of the result (99.9% accuracy, 99.8% sensitivity, 100% specificity) and provides a more reliable prediction. MiRANN performs better than other state-of-the-art approaches and declares to be the most potential tool to predict novel miRNAs. We have also tested our result using a previous negative set. MiRANN, opens new ground using ANN for predicting pre-miRNAs with a promise of better performance.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22349176     DOI: 10.1016/j.ygeno.2012.02.001

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  7 in total

1.  CL-PMI: A Precursor MicroRNA Identification Method Based on Convolutional and Long Short-Term Memory Networks.

Authors:  Huiqing Wang; Yue Ma; Chunlin Dong; Chun Li; Jingjing Wang; Dan Liu
Journal:  Front Genet       Date:  2019-10-11       Impact factor: 4.599

Review 2.  A Review of Computational Methods for Finding Non-Coding RNA Genes.

Authors:  Qaisar Abbas; Syed Mansoor Raza; Azizuddin Ahmed Biyabani; Muhammad Arfan Jaffar
Journal:  Genes (Basel)       Date:  2016-12-03       Impact factor: 4.096

3.  An improved method for identification of small non-coding RNAs in bacteria using support vector machine.

Authors:  Ranjan Kumar Barman; Anirban Mukhopadhyay; Santasabuj Das
Journal:  Sci Rep       Date:  2017-04-06       Impact factor: 4.379

4.  Deep neural networks for human microRNA precursor detection.

Authors:  Xueming Zheng; Xingli Fu; Kaicheng Wang; Meng Wang
Journal:  BMC Bioinformatics       Date:  2020-01-13       Impact factor: 3.169

Review 5.  Precision machine learning to understand micro-RNA regulation in neurodegenerative diseases.

Authors:  Lucile Mégret; Cloé Mendoza; Maialen Arrieta Lobo; Emmanuel Brouillet; Thi-Thanh-Yen Nguyen; Olivier Bouaziz; Antoine Chambaz; Christian Néri
Journal:  Front Mol Neurosci       Date:  2022-09-09       Impact factor: 6.261

6.  Model based on GA and DNN for prediction of mRNA-Smad7 expression regulated by miRNAs in breast cancer.

Authors:  Edgar Manzanarez-Ozuna; Dora-Luz Flores; Everardo Gutiérrez-López; David Cervantes; Patricia Juárez
Journal:  Theor Biol Med Model       Date:  2018-12-29       Impact factor: 2.432

7.  Combining feature selection and shape analysis uncovers precise rules for miRNA regulation in Huntington's disease mice.

Authors:  Lucile Mégret; Satish Sasidharan Nair; Julia Dancourt; Jeff Aaronson; Jim Rosinski; Christian Neri
Journal:  BMC Bioinformatics       Date:  2020-02-24       Impact factor: 3.169

  7 in total

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