Literature DB >> 22347129

5-Isopropyl-imidazolidine-2,4-dione monohydrate.

Alaa A-M Abdel-Aziz, Adel S El-Azab, Abdulrahman M Al-Obaid, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

In the title compound, C(6)H(10)N(2)O(2)·H(2)O, the imidazole ring is essentially planar, with a maximum deviation of 0.012 (2) Å. In the crystal, mol-ecules are connected via N-H⋯O and O-H⋯O hydrogen bonds, forming a supra-molecular tape along the a axis.

Entities:  

Year:  2012        PMID: 22347129      PMCID: PMC3275273          DOI: 10.1107/S1600536812002838

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details and applications of hydantoins, see: El-Deeb et al. (2010 ▶); Rajic et al. (2006 ▶); Carmi et al. (2006 ▶); Sergent et al., (2008 ▶); Yu et al. (2004 ▶). For related structues, see: Delgado et al. (2007 ▶); Ciechanowicz-Rutkowska et al. (1994 ▶). For the synthetic procedure, see: Abdel-Aziz (2007 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C6H10N2O2·H2O M = 160.18 Orthorhombic, a = 6.2688 (3) Å b = 9.2387 (4) Å c = 14.8280 (7) Å V = 858.77 (7) Å3 Z = 4 Cu Kα radiation μ = 0.84 mm−1 T = 296 K 0.90 × 0.21 × 0.16 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.518, T max = 0.879 5702 measured reflections 1497 independent reflections 1378 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.098 S = 1.09 1497 reflections 117 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), with 592 Friedel pairs Flack parameter: 0.2 (3) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812002838/is5056sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812002838/is5056Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812002838/is5056Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H10N2O2·H2OF(000) = 344
Mr = 160.18Dx = 1.239 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 2281 reflections
a = 6.2688 (3) Åθ = 5.6–65.9°
b = 9.2387 (4) ŵ = 0.84 mm1
c = 14.8280 (7) ÅT = 296 K
V = 858.77 (7) Å3Needle, colourless
Z = 40.90 × 0.21 × 0.16 mm
Bruker SMART APEXII CCD area-detector diffractometer1497 independent reflections
Radiation source: fine-focus sealed tube1378 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 67.3°, θmin = 5.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −7→5
Tmin = 0.518, Tmax = 0.879k = −11→10
5702 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.098w = 1/[σ2(Fo2) + (0.0552P)2 + 0.0813P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.001
1497 reflectionsΔρmax = 0.12 e Å3
117 parametersΔρmin = −0.18 e Å3
0 restraintsAbsolute structure: Flack (1983), 592 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.2 (3)
Experimental. 1H NMR (DMSO–d6): 10.54 (s, 1H, NH), 7.87 (s, 1H, NH), 3.89 (s, 1H), 2.01–1.97 (m, 1H), 0.94–0.92 (d, 3H, J = 7.0 Hz), 0.80–0.78 (d, 3H, J = 6.5 Hz). 13C NMR (DMSO–d6): 175.87, 158.28, 63.22, 30.01, 18.93, 16.31.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6583 (2)0.56794 (15)0.46328 (11)0.0679 (5)
O21.2150 (2)0.27203 (15)0.39487 (11)0.0590 (4)
N10.6703 (3)0.34173 (17)0.39871 (11)0.0472 (4)
N20.9719 (2)0.44507 (16)0.43611 (11)0.0503 (4)
C10.7524 (3)0.46070 (19)0.43523 (13)0.0481 (4)
C21.0337 (3)0.31526 (19)0.40226 (13)0.0440 (4)
C30.8324 (3)0.23514 (18)0.37618 (12)0.0436 (4)
H3A0.81560.15070.41560.052*
C40.8317 (3)0.1851 (2)0.27789 (14)0.0534 (5)
H4A0.95330.11960.27010.064*
C50.6312 (4)0.0986 (3)0.25796 (19)0.0828 (8)
H5A0.62020.01970.29980.124*
H5B0.63810.06130.19760.124*
H5C0.50860.16020.26390.124*
C60.8624 (5)0.3102 (3)0.21256 (16)0.0810 (7)
H6A0.99260.36000.22660.122*
H6B0.74460.37600.21770.122*
H6C0.86940.27360.15200.122*
H1N10.543 (4)0.329 (2)0.3981 (13)0.045 (5)*
H1N21.059 (5)0.509 (3)0.4591 (17)0.078 (8)*
O1W0.2489 (3)0.63212 (17)0.52044 (13)0.0665 (4)
H1W10.374 (6)0.617 (3)0.507 (2)0.096 (11)*
H2W20.214 (6)0.721 (4)0.531 (3)0.122 (13)*
U11U22U33U12U13U23
O10.0438 (9)0.0566 (8)0.1033 (12)0.0068 (6)−0.0017 (7)−0.0302 (8)
O20.0292 (8)0.0607 (8)0.0871 (11)0.0039 (6)−0.0030 (6)−0.0086 (7)
N10.0246 (8)0.0507 (8)0.0662 (10)−0.0020 (6)−0.0013 (6)−0.0127 (7)
N20.0309 (9)0.0475 (8)0.0725 (11)−0.0035 (6)−0.0045 (7)−0.0147 (8)
C10.0372 (10)0.0474 (9)0.0597 (12)0.0028 (8)−0.0024 (8)−0.0079 (8)
C20.0312 (9)0.0468 (9)0.0541 (10)−0.0018 (7)−0.0011 (7)−0.0001 (8)
C30.0323 (9)0.0394 (8)0.0591 (10)−0.0025 (6)0.0003 (7)−0.0028 (7)
C40.0443 (11)0.0491 (9)0.0667 (12)−0.0016 (8)0.0028 (8)−0.0161 (8)
C50.0645 (16)0.0895 (17)0.0945 (18)−0.0206 (13)−0.0049 (14)−0.0376 (14)
C60.098 (2)0.0838 (16)0.0617 (14)−0.0079 (15)0.0041 (13)−0.0044 (12)
O1W0.0438 (10)0.0557 (8)0.1000 (12)−0.0042 (7)−0.0067 (8)−0.0203 (8)
O1—C11.226 (2)C4—C51.518 (3)
O2—C21.210 (2)C4—C61.520 (3)
N1—C11.329 (2)C4—H4A0.9800
N1—C31.454 (2)C5—H5A0.9600
N1—H1N10.80 (2)C5—H5B0.9600
N2—C21.357 (2)C5—H5C0.9600
N2—C11.383 (3)C6—H6A0.9600
N2—H1N20.87 (3)C6—H6B0.9600
C2—C31.513 (2)C6—H6C0.9600
C3—C41.529 (3)O1W—H1W10.82 (4)
C3—H3A0.9800O1W—H2W20.87 (4)
C1—N1—C3112.51 (15)C5—C4—C3110.30 (17)
C1—N1—H1N1120.6 (15)C6—C4—C3112.16 (16)
C3—N1—H1N1126.2 (15)C5—C4—H4A107.2
C2—N2—C1111.89 (15)C6—C4—H4A107.2
C2—N2—H1N2124.4 (19)C3—C4—H4A107.2
C1—N2—H1N2123.6 (19)C4—C5—H5A109.5
O1—C1—N1128.32 (19)C4—C5—H5B109.5
O1—C1—N2124.05 (17)H5A—C5—H5B109.5
N1—C1—N2107.63 (16)C4—C5—H5C109.5
O2—C2—N2126.42 (17)H5A—C5—H5C109.5
O2—C2—C3126.79 (16)H5B—C5—H5C109.5
N2—C2—C3106.79 (15)C4—C6—H6A109.5
N1—C3—C2101.12 (13)C4—C6—H6B109.5
N1—C3—C4114.95 (15)H6A—C6—H6B109.5
C2—C3—C4113.19 (15)C4—C6—H6C109.5
N1—C3—H3A109.1H6A—C6—H6C109.5
C2—C3—H3A109.1H6B—C6—H6C109.5
C4—C3—H3A109.1H1W1—O1W—H2W2116 (3)
C5—C4—C6112.4 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O2i0.81 (2)2.12 (2)2.927 (2)174.0 (19)
N2—H1N2···O1Wii0.87 (3)1.88 (3)2.751 (2)173 (2)
O1W—H1W1···O10.82 (4)1.95 (4)2.767 (2)173 (3)
O1W—H2W2···O1iii0.86 (4)1.98 (4)2.839 (2)171 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O2i0.81 (2)2.12 (2)2.927 (2)174.0 (19)
N2—H1N2⋯O1Wii0.87 (3)1.88 (3)2.751 (2)173 (2)
O1W—H1W1⋯O10.82 (4)1.95 (4)2.767 (2)173 (3)
O1W—H2W2⋯O1iii0.86 (4)1.98 (4)2.839 (2)171 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

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