Literature DB >> 22347123

(3R,4S,5S,8S,10R,13R)-3-Hy-droxy-kaura-9(11),16-dien-18-oic acid.

Karren D Beattie, Mohan M Bhadbhade, Donald C Craig, David N Leach.   

Abstract

The title compound, C(20)H(28)O(3), was isolated during our investigation into the chemical composition and pharmacological activity of Centipeda cunninghamii (DC.) A. Braun & Asch. (Asteraceae). The enanti-opure compound, a diterpene with a carbon skeleton, is composed of three six- and one five-membered rings in chair, twist-boat, half-chair and envelope conformations, respectively. Each mol-ecule makes one intra- and one inter-molecular O-H⋯O hydrogen bond in the crystal lattice, forming hydrogen-bonded chains along [010]. The absolute configuration of the compound was assigned on the basis of optical rotation measurements.

Entities:  

Year:  2012        PMID: 22347123      PMCID: PMC3275267          DOI: 10.1107/S1600536812002206

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the characterization of related kaurane diterpenes, see: Reynolds et al. (1991 ▶); Piozzi et al. (1972 ▶). For literature on the occurrence of the 3S isomer of the title compound isolated from Ichthyothere terminalis and Pseudognaphalium cheiranthifolium, see: Bohlmann et al. (1982 ▶); Mendoza & Urzúa (1998 ▶). For the anti­bacterial activity of the 3S isomer, see: Mendoza et al. (1997 ▶). For phytopharmacological aspects of Centipeda cunninghamii, see: Campbell (1973 ▶); Cribb (1988 ▶); D’Amelio & Mirhom, (1998 ▶); Maiden (1975 ▶); Webb (1948 ▶). For optical rotation data of related compounds, see: Bohlmann et al. (1982 ▶); Brieskorn & Pöhlmann (1968 ▶); Reynolds et al. (1991 ▶).

Experimental

Crystal data

C20H28O3 M = 316.4 Monoclinic, a = 8.064 (2) Å b = 10.775 (3) Å c = 10.462 (4) Å β = 109.70 (2)° V = 855.8 (5) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.30 × 0.25 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 1586 measured reflections 1586 independent reflections 1254 reflections with I > 2σ(I) R int = 0.000 1 standard reflections every 30 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.112 S = 1.05 1586 reflections 218 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CAD-4 Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812002206/qk2025sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812002206/qk2025Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H28O3F(000) = 344
Mr = 316.4Dx = 1.228 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 11 reflections
a = 8.064 (2) Åθ = 10–11°
b = 10.775 (3) ŵ = 0.08 mm1
c = 10.462 (4) ÅT = 296 K
β = 109.70 (2)°Block, colourless
V = 855.8 (5) Å30.30 × 0.25 × 0.10 mm
Z = 2
Enraf–Nonius CAD-4 diffractometerRint = 0.0000
Radiation source: fine-focus sealed tubeθmax = 25.0°, θmin = 2.1°
graphiteh = −9→9
ω–2θ scansk = 0→12
1586 measured reflectionsl = 0→12
1586 independent reflections1 standard reflections every 30 min
1254 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.112w = 1/[σ2(Fo2) + (0.0704P)2] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
1586 reflectionsΔρmax = 0.15 e Å3
218 parametersΔρmin = −0.17 e Å3
1 restraintAbsolute structure: deduced from optical rotation
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3554 (4)0.4597 (3)0.9863 (3)0.0658 (8)
O20.4220 (4)0.2189 (3)0.9850 (2)0.0620 (7)
O30.5758 (4)0.1598 (3)0.8595 (3)0.0678 (9)
C10.0447 (4)0.3543 (4)0.6459 (4)0.0521 (10)
C20.1154 (5)0.3753 (4)0.7994 (4)0.0511 (9)
C30.2956 (5)0.4335 (3)0.8438 (3)0.0473 (9)
C40.4293 (4)0.3558 (3)0.8032 (3)0.0395 (8)
C50.3551 (4)0.3369 (3)0.6461 (3)0.0359 (7)
C60.4877 (5)0.2789 (4)0.5853 (3)0.0520 (9)
C70.4047 (5)0.2222 (4)0.4458 (3)0.0572 (10)
C80.2344 (4)0.2860 (4)0.3602 (3)0.0460 (8)
C90.1005 (4)0.2857 (3)0.4348 (3)0.0435 (8)
C100.1677 (4)0.2779 (3)0.5907 (3)0.0399 (8)
C11−0.0703 (5)0.2924 (4)0.3625 (4)0.0587 (10)
C12−0.1416 (5)0.3019 (4)0.2107 (4)0.0667 (12)
C130.0059 (6)0.3158 (4)0.1511 (4)0.0609 (11)
C140.1503 (6)0.2238 (4)0.2209 (4)0.0645 (11)
C150.2579 (5)0.4187 (4)0.3156 (3)0.0499 (9)
C160.0971 (5)0.4395 (4)0.1910 (3)0.0485 (9)
C170.0429 (5)0.5449 (4)0.1297 (4)0.0567 (10)
C180.4701 (4)0.2379 (3)0.8902 (3)0.0422 (8)
C190.6049 (5)0.4288 (4)0.8399 (4)0.0578 (10)
C200.1658 (5)0.1410 (4)0.6329 (4)0.0518 (9)
H1A0.02410.43440.60090.062*
H1B−0.06790.31210.62250.062*
H1O10.353 (7)0.381 (6)1.029 (6)0.11 (2)*
H1O30.598 (6)0.104 (5)0.916 (5)0.070 (14)*
H2A0.03520.42890.82510.061*
H2B0.12120.29650.84550.061*
H3A0.28440.51330.79660.057*
H50.33780.42150.60960.043*
H6A0.57000.34270.57990.062*
H6B0.55450.21520.64670.062*
H7A0.38020.13530.45610.069*
H7B0.48860.22620.39770.069*
H11−0.15040.29120.40890.070*
H12A−0.21970.37300.18470.080*
H12B−0.20970.22810.17360.080*
H13−0.03730.30440.05240.073*
H14A0.23400.21540.17320.077*
H14B0.10240.14290.22940.077*
H15A0.26180.47810.38630.060*
H15B0.36520.42600.29370.060*
H17A−0.06000.54800.05490.068*
H17B0.10710.61710.16100.068*
H19A0.64170.45300.93360.087*
H19B0.58810.50140.78390.087*
H19C0.69360.37710.82500.087*
H20A0.04910.10800.59290.078*
H20B0.20060.13560.73000.078*
H20C0.24640.09420.60210.078*
U11U22U33U12U13U23
O10.094 (2)0.0543 (18)0.0541 (17)−0.0171 (15)0.0310 (15)−0.0191 (14)
O20.0852 (18)0.0558 (16)0.0539 (14)0.0077 (16)0.0353 (14)0.0151 (14)
O30.0799 (19)0.0664 (19)0.0635 (19)0.0311 (16)0.0324 (16)0.0300 (16)
C10.0394 (19)0.061 (2)0.054 (2)0.0037 (18)0.0125 (16)0.0050 (19)
C20.053 (2)0.046 (2)0.060 (2)0.0081 (18)0.0275 (18)−0.0023 (18)
C30.067 (2)0.0321 (18)0.047 (2)−0.0034 (17)0.0240 (17)−0.0033 (16)
C40.0405 (18)0.0345 (18)0.0401 (18)−0.0065 (15)0.0094 (14)−0.0001 (15)
C50.0370 (16)0.0337 (16)0.0352 (16)0.0009 (14)0.0100 (13)0.0038 (14)
C60.0451 (18)0.066 (2)0.0468 (19)0.0127 (19)0.0179 (16)0.0072 (19)
C70.070 (2)0.056 (2)0.052 (2)0.020 (2)0.0293 (18)0.008 (2)
C80.055 (2)0.0439 (19)0.0368 (17)0.0057 (18)0.0120 (15)0.0002 (16)
C90.053 (2)0.0355 (16)0.0396 (17)−0.0086 (17)0.0127 (15)−0.0014 (15)
C100.0408 (18)0.0368 (18)0.0406 (18)−0.0055 (16)0.0119 (15)−0.0012 (15)
C110.052 (2)0.065 (2)0.051 (2)−0.020 (2)0.0080 (18)0.004 (2)
C120.063 (2)0.070 (3)0.048 (2)−0.025 (2)−0.0063 (19)0.004 (2)
C130.085 (3)0.054 (3)0.0337 (18)0.001 (2)0.0073 (19)−0.0051 (16)
C140.095 (3)0.047 (2)0.047 (2)0.007 (2)0.019 (2)−0.0020 (19)
C150.052 (2)0.055 (2)0.0442 (19)−0.0005 (18)0.0193 (16)0.0042 (18)
C160.059 (2)0.049 (2)0.0421 (19)0.0009 (18)0.0233 (16)0.0043 (17)
C170.049 (2)0.058 (2)0.065 (2)0.0036 (19)0.0203 (17)0.009 (2)
C180.0398 (17)0.0418 (18)0.0397 (17)−0.0048 (16)0.0061 (15)−0.0008 (16)
C190.052 (2)0.057 (2)0.058 (2)−0.017 (2)0.0090 (18)0.0025 (19)
C200.064 (2)0.042 (2)0.046 (2)−0.0102 (18)0.0138 (17)−0.0012 (17)
O1—C31.432 (4)C8—C151.536 (5)
O1—H1O10.96 (7)C8—C141.538 (5)
O2—C181.198 (4)C9—C111.331 (5)
O3—C181.312 (4)C9—C101.537 (4)
O3—H1O30.82 (5)C10—C201.541 (5)
C1—C21.529 (5)C11—C121.499 (5)
C1—C101.544 (5)C11—H110.9300
C1—H1A0.9700C12—C131.525 (6)
C1—H1B0.9700C12—H12A0.9700
C2—C31.505 (5)C12—H12B0.9700
C2—H2A0.9700C13—C161.511 (6)
C2—H2B0.9700C13—C141.516 (6)
C3—C41.534 (5)C13—H130.9800
C3—H3A0.9800C14—H14A0.9700
C4—C181.532 (5)C14—H14B0.9700
C4—C191.551 (5)C15—C161.514 (5)
C4—C51.562 (4)C15—H15A0.9700
C5—C61.549 (5)C15—H15B0.9700
C5—C101.559 (4)C16—C171.305 (6)
C5—H50.9800C17—H17A0.9300
C6—C71.514 (5)C17—H17B0.9300
C6—H6A0.9700C19—H19A0.9600
C6—H6B0.9700C19—H19B0.9600
C7—C81.527 (5)C19—H19C0.9600
C7—H7A0.9700C20—H20A0.9600
C7—H7B0.9700C20—H20B0.9600
C8—C91.531 (5)C20—H20C0.9600
C3—O1—H1O1105 (4)C9—C10—C1109.0 (3)
C18—O3—H1O3107 (3)C20—C10—C1109.5 (3)
C2—C1—C10114.4 (3)C9—C10—C5108.8 (2)
C2—C1—H1A108.7C20—C10—C5112.7 (3)
C10—C1—H1A108.7C1—C10—C5107.9 (3)
C2—C1—H1B108.7C9—C11—C12124.1 (4)
C10—C1—H1B108.7C9—C11—H11118.0
H1A—C1—H1B107.6C12—C11—H11118.0
C3—C2—C1111.4 (3)C11—C12—C13111.5 (3)
C3—C2—H2A109.3C11—C12—H12A109.3
C1—C2—H2A109.3C13—C12—H12A109.3
C3—C2—H2B109.3C11—C12—H12B109.3
C1—C2—H2B109.3C13—C12—H12B109.3
H2A—C2—H2B108.0H12A—C12—H12B108.0
O1—C3—C2110.8 (3)C16—C13—C14102.7 (3)
O1—C3—C4112.0 (3)C16—C13—C12110.4 (3)
C2—C3—C4112.5 (3)C14—C13—C12108.5 (3)
O1—C3—H3A107.1C16—C13—H13111.6
C2—C3—H3A107.1C14—C13—H13111.6
C4—C3—H3A107.1C12—C13—H13111.6
C18—C4—C3108.6 (3)C13—C14—C8101.2 (3)
C18—C4—C19106.2 (3)C13—C14—H14A111.5
C3—C4—C19108.8 (3)C8—C14—H14A111.5
C18—C4—C5116.5 (3)C13—C14—H14B111.5
C3—C4—C5107.9 (3)C8—C14—H14B111.5
C19—C4—C5108.7 (3)H14A—C14—H14B109.4
C6—C5—C10113.6 (3)C16—C15—C8104.0 (3)
C6—C5—C4114.4 (3)C16—C15—H15A111.0
C10—C5—C4115.1 (2)C8—C15—H15A111.0
C6—C5—H5104.0C16—C15—H15B111.0
C10—C5—H5104.0C8—C15—H15B111.0
C4—C5—H5104.0H15A—C15—H15B109.0
C7—C6—C5114.6 (3)C17—C16—C13125.5 (3)
C7—C6—H6A108.6C17—C16—C15126.8 (4)
C5—C6—H6A108.6C13—C16—C15107.7 (3)
C7—C6—H6B108.6C16—C17—H17A120.0
C5—C6—H6B108.6C16—C17—H17B120.0
H6A—C6—H6B107.6H17A—C17—H17B120.0
C6—C7—C8113.7 (3)O2—C18—O3120.7 (3)
C6—C7—H7A108.8O2—C18—C4124.7 (3)
C8—C7—H7A108.8O3—C18—C4114.4 (3)
C6—C7—H7B108.8C4—C19—H19A109.5
C8—C7—H7B108.8C4—C19—H19B109.5
H7A—C7—H7B107.7H19A—C19—H19B109.5
C7—C8—C9110.5 (3)C4—C19—H19C109.5
C7—C8—C15114.8 (3)H19A—C19—H19C109.5
C9—C8—C15109.7 (3)H19B—C19—H19C109.5
C7—C8—C14112.5 (3)C10—C20—H20A109.5
C9—C8—C14108.7 (3)C10—C20—H20B109.5
C15—C8—C14100.2 (3)H20A—C20—H20B109.5
C11—C9—C8118.8 (3)C10—C20—H20C109.5
C11—C9—C10122.3 (3)H20A—C20—H20C109.5
C8—C9—C10118.9 (3)H20B—C20—H20C109.5
C9—C10—C20108.8 (3)
C10—C1—C2—C354.8 (4)C2—C1—C10—C2072.3 (4)
C1—C2—C3—O1176.4 (3)C2—C1—C10—C5−50.7 (4)
C1—C2—C3—C4−57.4 (4)C6—C5—C10—C9−55.0 (4)
O1—C3—C4—C1855.0 (3)C4—C5—C10—C9170.5 (3)
C2—C3—C4—C18−70.5 (3)C6—C5—C10—C2065.7 (4)
O1—C3—C4—C19−60.1 (4)C4—C5—C10—C20−68.7 (3)
C2—C3—C4—C19174.4 (3)C6—C5—C10—C1−173.2 (3)
O1—C3—C4—C5−177.9 (3)C4—C5—C10—C152.3 (4)
C2—C3—C4—C556.6 (3)C8—C9—C11—C12−0.8 (6)
C18—C4—C5—C6−67.3 (4)C10—C9—C11—C12179.1 (4)
C3—C4—C5—C6170.3 (3)C9—C11—C12—C13−5.6 (6)
C19—C4—C5—C652.5 (4)C11—C12—C13—C16−67.3 (5)
C18—C4—C5—C1066.8 (4)C11—C12—C13—C1444.5 (5)
C3—C4—C5—C10−55.6 (3)C16—C13—C14—C842.4 (4)
C19—C4—C5—C10−173.4 (3)C12—C13—C14—C8−74.4 (4)
C10—C5—C6—C726.2 (5)C7—C8—C14—C13−171.1 (3)
C4—C5—C6—C7161.1 (3)C9—C8—C14—C1366.3 (4)
C5—C6—C7—C830.5 (5)C15—C8—C14—C13−48.7 (4)
C6—C7—C8—C9−56.6 (4)C7—C8—C15—C16156.9 (3)
C6—C7—C8—C1568.0 (4)C9—C8—C15—C16−78.1 (3)
C6—C7—C8—C14−178.2 (3)C14—C8—C15—C1636.2 (3)
C7—C8—C9—C11−154.9 (4)C14—C13—C16—C17161.6 (4)
C15—C8—C9—C1177.6 (4)C12—C13—C16—C17−82.9 (5)
C14—C8—C9—C11−31.1 (5)C14—C13—C16—C15−19.9 (4)
C7—C8—C9—C1025.3 (4)C12—C13—C16—C1595.6 (4)
C15—C8—C9—C10−102.2 (3)C8—C15—C16—C17167.9 (3)
C14—C8—C9—C10149.1 (3)C8—C15—C16—C13−10.5 (4)
C11—C9—C10—C2085.3 (5)C3—C4—C18—O2−8.6 (4)
C8—C9—C10—C20−94.8 (4)C19—C4—C18—O2108.2 (4)
C11—C9—C10—C1−34.0 (5)C5—C4—C18—O2−130.6 (4)
C8—C9—C10—C1145.8 (3)C3—C4—C18—O3176.3 (3)
C11—C9—C10—C5−151.5 (4)C19—C4—C18—O3−66.9 (4)
C8—C9—C10—C528.3 (4)C5—C4—C18—O354.3 (4)
C2—C1—C10—C9−168.8 (3)
D—H···AD—HH···AD···AD—H···A
O3—H1O3···O1i0.82 (5)1.83 (5)2.637 (4)169 (5)
O1—H1O1···O20.96 (7)1.94 (6)2.651 (4)129 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H1O3⋯O1i0.82 (5)1.83 (5)2.637 (4)169 (5)
O1—H1O1⋯O20.96 (7)1.94 (6)2.651 (4)129 (5)

Symmetry code: (i) .

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