Literature DB >> 22347092

3-(3-Cyano-benz-yl)-1-methyl-1H-imidazol-3-ium hexa-fluoro-phosphate.

Rosenani A Haque, Zulikha H Zetty, Abbas Washeel Salman, Hoong-Kun Fun, Chin Wei Ooi.   

Abstract

In the title compound, C(12)H(12)N(3) (+)·PF(6) (-), the hexa-fluoro-phosphate anion is disordered over two orientations with refined site occupancies of 0.8071 (17) and 0.1929 (17). The dihedral angle between the imidazole and benzene rings in the cation is 71.26 (7)°. In the crystal, the cations and anions are linked by C-H⋯F and C-H⋯N hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2012        PMID: 22347092      PMCID: PMC3275236          DOI: 10.1107/S1600536812001882

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details and applications of N-heterocyclic carbenes, see: Hermann et al. (1997 ▶); Wanzlick & Kleiner (1961 ▶); Hermann & Köcher (1997 ▶); Baker et al. (2007 ▶); Gade & Laponnaz (2007 ▶); Özdemir et al. (2005 ▶); Köcher & Hermann (1997 ▶); Cetinkaya et al. (1997 ▶). For a related structure, see: Haque et al. (2011 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C12H12N3 +·F6P− M = 343.22 Triclinic, a = 5.9782 (1) Å b = 8.7920 (1) Å c = 14.1028 (2) Å α = 77.975 (1)° β = 83.279 (1)° γ = 86.635 (1)° V = 719.55 (2) Å3 Z = 2 Mo Kα radiation μ = 0.26 mm−1 T = 100 K 0.43 × 0.24 × 0.21 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.897, T max = 0.949 14376 measured reflections 5233 independent reflections 4485 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.123 S = 1.04 5233 reflections 246 parameters 21 restraints H-atom parameters constrained Δρmax = 0.91 e Å−3 Δρmin = −0.64 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812001882/hb6605sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812001882/hb6605Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812001882/hb6605Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N3+·F6PZ = 2
Mr = 343.22F(000) = 348
Triclinic, P1Dx = 1.584 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.9782 (1) ÅCell parameters from 6359 reflections
b = 8.7920 (1) Åθ = 2.5–32.7°
c = 14.1028 (2) ŵ = 0.26 mm1
α = 77.975 (1)°T = 100 K
β = 83.279 (1)°Block, colourless
γ = 86.635 (1)°0.43 × 0.24 × 0.21 mm
V = 719.55 (2) Å3
Bruker SMART APEXII CCD diffractometer5233 independent reflections
Radiation source: fine-focus sealed tube4485 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 32.7°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.897, Tmax = 0.949k = −13→13
14376 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0569P)2 + 0.372P] where P = (Fo2 + 2Fc2)/3
5233 reflections(Δ/σ)max = 0.001
246 parametersΔρmax = 0.91 e Å3
21 restraintsΔρmin = −0.64 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
P10.0915 (2)0.73349 (10)0.16370 (8)0.0173 (2)0.8071 (17)
F10.3566 (2)0.7033 (2)0.15625 (12)0.0487 (4)0.8071 (17)
F20.1025 (4)0.8343 (3)0.05737 (16)0.0487 (6)0.8071 (17)
F3−0.1762 (2)0.75757 (17)0.17710 (10)0.0374 (3)0.8071 (17)
F40.0797 (3)0.6287 (2)0.27361 (12)0.0451 (4)0.8071 (17)
F50.0591 (2)0.57833 (15)0.12519 (12)0.0465 (4)0.8071 (17)
F60.1151 (3)0.88412 (15)0.20813 (11)0.0484 (4)0.8071 (17)
P1X0.0958 (11)0.7363 (8)0.1577 (5)0.045 (2)0.1929 (17)
F1X0.3348 (10)0.8099 (9)0.1558 (4)0.0486 (16)0.1929 (17)
F2X0.0465 (16)0.8713 (10)0.0645 (7)0.0324 (16)0.1929 (17)
F3X−0.1326 (12)0.6656 (11)0.1492 (5)0.077 (3)0.1929 (17)
F4X0.1509 (10)0.6010 (6)0.2425 (4)0.0288 (12)0.1929 (17)
F5X0.2115 (10)0.6342 (6)0.0790 (5)0.0465 (4)0.1929 (17)
F6X−0.0153 (13)0.8381 (7)0.2262 (5)0.0484 (4)0.1929 (17)
N10.46336 (19)0.22118 (13)0.12431 (7)0.0216 (2)
N20.6288 (2)0.30531 (13)0.23067 (8)0.0233 (2)
N30.8071 (2)−0.08439 (15)0.65425 (9)0.0290 (2)
C10.4607 (2)0.33312 (14)0.17476 (9)0.0229 (2)
H1A0.35580.41900.17150.027*
C20.6385 (2)0.11742 (16)0.14906 (9)0.0267 (3)
H2A0.67910.02620.12400.032*
C30.7419 (2)0.16950 (17)0.21571 (9)0.0270 (3)
H3A0.86860.12170.24650.032*
C40.6750 (3)0.39959 (17)0.30071 (10)0.0312 (3)
H4A0.61250.50670.28030.037*
H4B0.83990.40540.30040.037*
C50.5724 (2)0.33138 (14)0.40301 (9)0.0238 (2)
C60.3613 (3)0.38393 (16)0.43888 (10)0.0278 (3)
H6A0.28100.46430.39910.033*
C70.2671 (2)0.31960 (17)0.53257 (11)0.0288 (3)
H7A0.12380.35720.55650.035*
C80.3807 (2)0.20105 (16)0.59146 (10)0.0253 (3)
H8A0.31630.15700.65540.030*
C90.5913 (2)0.14774 (15)0.55501 (9)0.02253 (17)
C100.6883 (2)0.21320 (15)0.46148 (9)0.0222 (2)
H10A0.83290.17710.43790.027*
C110.3054 (3)0.21229 (18)0.05341 (10)0.0303 (3)
H11A0.19510.29960.05090.045*
H11B0.22690.11410.07320.045*
H11C0.38890.2172−0.01120.045*
C120.7105 (2)0.01965 (15)0.61205 (9)0.02253 (17)
U11U22U33U12U13U23
P10.0196 (5)0.0133 (3)0.0188 (3)0.0025 (3)−0.0025 (3)−0.0035 (3)
F10.0187 (5)0.0593 (9)0.0658 (10)−0.0012 (6)0.0014 (5)−0.0109 (8)
F20.0589 (15)0.0616 (16)0.0208 (7)−0.0189 (10)−0.0030 (8)0.0067 (8)
F30.0226 (5)0.0446 (7)0.0422 (7)0.0100 (5)−0.0036 (5)−0.0058 (6)
F40.0442 (9)0.0523 (10)0.0318 (8)−0.0136 (7)−0.0165 (6)0.0179 (7)
F50.0475 (8)0.0333 (6)0.0690 (9)0.0102 (5)−0.0183 (7)−0.0302 (6)
F60.0702 (10)0.0290 (6)0.0559 (8)0.0030 (6)−0.0275 (8)−0.0211 (6)
P1X0.019 (3)0.053 (4)0.058 (4)0.001 (2)−0.007 (2)0.000 (3)
F1X0.035 (3)0.060 (4)0.047 (3)−0.026 (3)−0.014 (2)0.010 (3)
F2X0.036 (4)0.023 (3)0.028 (3)0.010 (2)0.006 (2)0.008 (2)
F3X0.047 (4)0.112 (7)0.055 (4)−0.054 (5)−0.038 (3)0.056 (5)
F4X0.039 (3)0.027 (2)0.015 (2)0.012 (2)−0.0012 (18)0.0023 (17)
F5X0.0475 (8)0.0333 (6)0.0690 (9)0.0102 (5)−0.0183 (7)−0.0302 (6)
F6X0.0702 (10)0.0290 (6)0.0559 (8)0.0030 (6)−0.0275 (8)−0.0211 (6)
N10.0237 (5)0.0234 (5)0.0160 (4)0.0022 (4)−0.0016 (4)−0.0014 (4)
N20.0265 (5)0.0237 (5)0.0181 (4)−0.0015 (4)−0.0018 (4)−0.0006 (4)
N30.0273 (6)0.0320 (6)0.0274 (5)0.0024 (5)−0.0061 (4)−0.0048 (5)
C10.0261 (6)0.0206 (5)0.0200 (5)0.0030 (4)−0.0013 (4)−0.0012 (4)
C20.0310 (6)0.0268 (6)0.0196 (5)0.0097 (5)0.0008 (5)−0.0035 (4)
C30.0251 (6)0.0329 (6)0.0198 (5)0.0077 (5)−0.0013 (4)−0.0011 (5)
C40.0437 (8)0.0280 (6)0.0221 (6)−0.0134 (6)−0.0048 (5)−0.0014 (5)
C50.0313 (6)0.0211 (5)0.0203 (5)−0.0053 (5)−0.0054 (5)−0.0045 (4)
C60.0348 (7)0.0232 (5)0.0273 (6)0.0041 (5)−0.0112 (5)−0.0068 (5)
C70.0285 (6)0.0296 (6)0.0297 (6)0.0070 (5)−0.0034 (5)−0.0111 (5)
C80.0268 (6)0.0275 (6)0.0217 (5)0.0018 (5)−0.0006 (5)−0.0074 (5)
C90.0234 (4)0.0245 (4)0.0208 (4)−0.0005 (3)−0.0034 (3)−0.0066 (3)
C100.0222 (5)0.0242 (5)0.0213 (5)−0.0022 (4)−0.0029 (4)−0.0067 (4)
C110.0322 (7)0.0357 (7)0.0237 (6)−0.0039 (6)−0.0067 (5)−0.0046 (5)
C120.0234 (4)0.0245 (4)0.0208 (4)−0.0005 (3)−0.0034 (3)−0.0066 (3)
P1—F21.571 (2)C2—C31.351 (2)
P1—F11.5860 (17)C2—H2A0.9500
P1—F31.5964 (17)C3—H3A0.9500
P1—F61.5983 (15)C4—C51.5141 (19)
P1—F51.5993 (14)C4—H4A0.9900
P1—F41.6257 (18)C4—H4B0.9900
P1X—F6X1.523 (8)C5—C101.3899 (18)
P1X—F4X1.552 (8)C5—C61.394 (2)
P1X—F3X1.560 (8)C6—C71.391 (2)
P1X—F1X1.598 (8)C6—H6A0.9500
P1X—F2X1.619 (10)C7—C81.3875 (19)
P1X—F5X1.637 (8)C7—H7A0.9500
N1—C11.3275 (17)C8—C91.3959 (18)
N1—C21.3751 (17)C8—H8A0.9500
N1—C111.4695 (18)C9—C101.3970 (18)
N2—C11.3298 (17)C9—C121.4444 (18)
N2—C31.3799 (17)C10—H10A0.9500
N2—C41.4733 (18)C11—H11A0.9800
N3—C121.1471 (18)C11—H11B0.9800
C1—H1A0.9500C11—H11C0.9800
F2—P1—F192.46 (13)N2—C1—H1A125.6
F2—P1—F390.74 (12)C3—C2—N1107.16 (12)
F1—P1—F3176.79 (11)C3—C2—H2A126.4
F2—P1—F691.41 (12)N1—C2—H2A126.4
F1—P1—F690.49 (11)C2—C3—N2107.07 (12)
F3—P1—F689.64 (10)C2—C3—H3A126.5
F2—P1—F591.54 (13)N2—C3—H3A126.5
F1—P1—F591.14 (10)N2—C4—C5111.59 (11)
F3—P1—F588.56 (10)N2—C4—H4A109.3
F6—P1—F5176.57 (12)C5—C4—H4A109.3
F2—P1—F4179.81 (15)N2—C4—H4B109.3
F1—P1—F487.62 (10)C5—C4—H4B109.3
F3—P1—F489.18 (10)H4A—C4—H4B108.0
F6—P1—F488.76 (10)C10—C5—C6119.47 (12)
F5—P1—F488.29 (10)C10—C5—C4119.72 (13)
F6X—P1X—F4X93.3 (5)C6—C5—C4120.81 (13)
F6X—P1X—F3X92.6 (6)C7—C6—C5120.48 (12)
F4X—P1X—F3X92.2 (5)C7—C6—H6A119.8
F6X—P1X—F1X91.3 (5)C5—C6—H6A119.8
F4X—P1X—F1X91.2 (5)C8—C7—C6120.60 (13)
F3X—P1X—F1X174.7 (6)C8—C7—H7A119.7
F6X—P1X—F2X90.2 (5)C6—C7—H7A119.7
F4X—P1X—F2X176.5 (6)C7—C8—C9118.78 (12)
F3X—P1X—F2X87.9 (6)C7—C8—H8A120.6
F1X—P1X—F2X88.5 (6)C9—C8—H8A120.6
F6X—P1X—F5X176.9 (6)C8—C9—C10120.97 (12)
F4X—P1X—F5X89.9 (4)C8—C9—C12120.61 (12)
F3X—P1X—F5X87.1 (6)C10—C9—C12118.39 (12)
F1X—P1X—F5X88.8 (5)C5—C10—C9119.70 (12)
F2X—P1X—F5X86.6 (5)C5—C10—H10A120.2
C1—N1—C2108.59 (11)C9—C10—H10A120.2
C1—N1—C11125.08 (11)N1—C11—H11A109.5
C2—N1—C11126.33 (12)N1—C11—H11B109.5
C1—N2—C3108.33 (11)H11A—C11—H11B109.5
C1—N2—C4125.08 (12)N1—C11—H11C109.5
C3—N2—C4126.49 (12)H11A—C11—H11C109.5
N1—C1—N2108.85 (11)H11B—C11—H11C109.5
N1—C1—H1A125.6N3—C12—C9177.42 (14)
C2—N1—C1—N20.34 (14)N2—C4—C5—C6−95.13 (16)
C11—N1—C1—N2−179.13 (12)C10—C5—C6—C70.3 (2)
C3—N2—C1—N1−0.48 (14)C4—C5—C6—C7179.33 (13)
C4—N2—C1—N1−177.01 (11)C5—C6—C7—C8−0.7 (2)
C1—N1—C2—C3−0.07 (15)C6—C7—C8—C90.1 (2)
C11—N1—C2—C3179.40 (12)C7—C8—C9—C100.8 (2)
N1—C2—C3—N2−0.22 (15)C7—C8—C9—C12−177.06 (13)
C1—N2—C3—C20.43 (15)C6—C5—C10—C90.52 (19)
C4—N2—C3—C2176.90 (12)C4—C5—C10—C9−178.47 (12)
C1—N2—C4—C595.87 (16)C8—C9—C10—C5−1.09 (19)
C3—N2—C4—C5−80.04 (18)C12—C9—C10—C5176.79 (12)
N2—C4—C5—C1083.85 (16)
D—H···AD—HH···AD···AD—H···A
C1—H1A···F10.952.463.240 (2)139
C1—H1A···F50.952.273.1715 (18)159
C2—H2A···F3i0.952.463.250 (2)140
C3—H3A···N3ii0.952.493.3970 (19)160
C4—H4B···F4iii0.992.443.177 (2)131
C6—H6A···F40.952.433.361 (2)167
C10—H10A···N3ii0.952.563.5019 (17)170
C11—H11B···F6iv0.982.533.400 (2)148
C11—H11C···F1v0.982.413.353 (2)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯F10.952.463.240 (2)139
C1—H1A⋯F50.952.273.1715 (18)159
C2—H2A⋯F3i0.952.463.250 (2)140
C3—H3A⋯N3ii0.952.493.3970 (19)160
C4—H4B⋯F4iii0.992.443.177 (2)131
C6—H6A⋯F40.952.433.361 (2)167
C10—H10A⋯N3ii0.952.563.5019 (17)170
C11—H11B⋯F6iv0.982.533.400 (2)148
C11—H11C⋯F1v0.982.413.353 (2)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1,3-Bis(2-cyano-benz-yl)imidazolium bromide.

Authors:  Rosenani A Haque; Safaa A Ahmed; Zulikha H Zetty; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  Crystal structure of 1-benzyl-3-methyl-1H-imidazolium hexa-fluorido-phosphate.

Authors:  Patrick C Hillesheim; Kent A Scipione
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-11-12
  1 in total

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